mRNA_Ecto-sp13_S_contig10046.69.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10046.69.1
Unique NamemRNA_Ecto-sp13_S_contig10046.69.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10046.69.1 vs. uniprot
Match: A0A6H5KFU5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.320e-17
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:  262 CLLSGARLCGRTSECDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXX----CGSRRAGLCCSWLSSLLLGWDWLPIATSGAPVAG 501
            C  +GARLCGR SECDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXX    C SRRAG CCSWLSSLLLGWDWLPIATSGAPVAG
Sbjct:   16 CRRTGARLCGRNSECDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRSRRAGPCCSWLSSLLLGWDWLPIATSGAPVAG 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10046.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFU5_9PHAE1.320e-1788.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10046contigEcto-sp13_S_contig10046:2576..4499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size623
Hectar predicted targeting categorysignal peptide
Exons3
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.2346234-CDS-Ecto-sp13_S_contig10046:2575..28491681462503.2346234-CDS-Ecto-sp13_S_contig10046:2575..2849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10046 2576..2849 +
1681462503.244927-CDS-Ecto-sp13_S_contig10046:3166..33731681462503.244927-CDS-Ecto-sp13_S_contig10046:3166..3373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10046 3167..3373 +
1681462503.2552917-CDS-Ecto-sp13_S_contig10046:4358..44981681462503.2552917-CDS-Ecto-sp13_S_contig10046:4358..4498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10046 4359..4498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10046.69.1prot_Ecto-sp13_S_contig10046.69.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10046 2576..4498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10046.69.1

>prot_Ecto-sp13_S_contig10046.69.1 ID=prot_Ecto-sp13_S_contig10046.69.1|Name=mRNA_Ecto-sp13_S_contig10046.69.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
CHSEAWSRVLLFFRGVAVPCSLELAAVTLIRCPFNAGNDALLLPHASRVA
HHVEYGTHYGHGCVCVRARESCGTPPPEVPSEAPPVECLLSGARLCGRTS
ECDDGNGGCCCCCGCERPETNGGNNSNGGGGSSCGSRRAGLCCSWLSSLL
LGWDWLPIATSGAPVAGGGGQALGGSASAAIPRHSSGGTGRGGGGSGGAV
GDMAVAL
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mRNA from alignment at Ecto-sp13_S_contig10046:2576..4499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10046.69.1 ID=mRNA_Ecto-sp13_S_contig10046.69.1|Name=mRNA_Ecto-sp13_S_contig10046.69.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10046:2576..4499+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCATTCGGAGGCTTGGAGTCGGGTTCTTTTGTTCTTTCGTGGCGTCGC
CGTTCCGTGCTCGTTGGAGCTAGCAGCGGTTACTCTCATTCGTTGTCCGT
TCAATGCCGGCAACGATGCATTACTGCTGCCGCATGCGAGCCGTGTGGCG
CACCATGTCGAATACGGGACTCACTACGGCCATGGTTGTGTCTGCGTTCG
CGCTCGTGAATCATGCGGTACACCCCCACCGGAAGTACCATCTGAAGCCC
CCCCCGTCGAGTGCTTGTTGTCAGGTTTGAGCTATCAGATCGGTGCTAAA
CGTTGGCTTGGTGATTTTTTTTTGTGGTAGGTATGCATCGATATGGTGCG
CTGCGAGCGCTCCTTTCTCACCATGCCACGGAAAACGACAGCACCAATGC
GTTGTCATGGCCAACAACGTCAGCAACATCGTGGCTATTTCTAGCTGGGG
TTTTCTCCATGCGAGGGGCCGAAAAATCTCTAGACCCCGCGCGCCCCACA
GTCGTGTGCGCTACTGCTGTGACGACACATGAGATGACGCGCAATCGATC
TTCTGAAACGTTCGAGCTTTTCGACGTGGTTTATTTGCCAGGTGCTCGCC
TCTGCGGCCGCACCAGCGAGTGCGATGATGGTAACGGCGGGTGCTGCTGC
TGCTGCGGCTGCGAGAGGCCGGAAACCAATGGCGGTAACAACAGCAACGG
CGGCGGCGGCAGCAGCTGCGGTAGTCGTCGCGCCGGTCTGTGCTGCAGCT
GGCTGTCGTCGTTGCTCCTAGGCTGGGATTGGCTCCCCATCGCTACGTGT
GAGTGAAGGACGGCACGAATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTGGACGTCACATTGAGAACCGTTCCGGTCTCCGCTCAGTATTCCTTGT
AGTGCCCGCACTTTTCCATCTGACGCGAGAGTATTTGAAGAGACACGAAG
ATGTTTTCCATCTTCTTAACTGTGAAGAACGTACGGTGTACTTCAGGCGG
AGACGTACAATCGGTGGTCAATAAATGGGAAAGCAGAAACTGCGTTTCGG
GGTCATTGGTTGGGGGCGGGTATGCTCTGTGGGGCGATGTCGATGCATCG
GTTCAGCAGGAGTTGGTAACTACGGACGGATGTCGTCGCGTTTGTTTCCT
CCGCGGTTACCCACACGCCTGAACAGACGGGTGTGTCCAAGAGAGCGAAG
GAAGGTTTTTTCCCCATGGCGCATCATCGCATCACACATCTACCCGCGTC
GTTTTTTGCATCGTGTTGGCCTCTCTTTCGTTACGCACGCTCGTTCTCTC
TGTCTCTCTCTCTCTCTCTCTCTCTCTCGAACGCCACACGTTACAGACTG
GTCTGAATGCTTTTGTGGTGTTCTTGCGCCCTGCCCTACTCCGCTTACAT
TTGTTTATCCCCGGCGGCGCCCAAATCCCTACCCCTCACTCCGCATATCG
CGGCTAAAGAACATGCCTTATCCAACACGGACCGACAACCCCCCTTGGCC
CGTCAAAATTCCGAGGTAGCCCGAGCGTCGTGTCACTTGGACTTGGATGA
GGCGGCAAAAGAACTAACCTCTCCAAACACCGACCAAACTTGGAACCTGC
ATTTTTTGTACACTTCAAGGAATGAAGATAAGCTAAAGCAACCGTGCACC
AAATGAACACATGGTCAGAGGATATTTATACACTCCCTTCGTTTATAACA
TAAACTCCTCTCAATTTGTGCTCCGTATATATATTTTGGCTCATTTGTCT
CCCTTGGCCCGTCAAAACATTTCGGGACGGCAGCCGGGGCTCCTGTAGCC
GGAGGCGGCGGGCAGGCCCTGGGGGGAAGCGCCTCCGCAGCAATTCCTCG
CCACTCGTCGGGCGGCACCGGTAGAGGCGGCGGCGGCAGCGGGGGGGCAG
TTGGTGATATGGCGGTGGCCTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10046:2576..4499+

>mRNA_Ecto-sp13_S_contig10046.69.1 ID=mRNA_Ecto-sp13_S_contig10046.69.1|Name=mRNA_Ecto-sp13_S_contig10046.69.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10046:2576..4499+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCATTCGGAGGCTTGGAGTCGGGTTCTTTTGTTCTTTCGTGGCGTCGC
CGTTCCGTGCTCGTTGGAGCTAGCAGCGGTTACTCTCATTCGTTGTCCGT
TCAATGCCGGCAACGATGCATTACTGCTGCCGCATGCGAGCCGTGTGGCG
CACCATGTCGAATACGGGACTCACTACGGCCATGGTTGTGTCTGCGTTCG
CGCTCGTGAATCATGCGGTACACCCCCACCGGAAGTACCATCTGAAGCCC
CCCCCGTCGAGTGCTTGTTGTCAGGTGCTCGCCTCTGCGGCCGCACCAGC
GAGTGCGATGATGGTAACGGCGGGTGCTGCTGCTGCTGCGGCTGCGAGAG
GCCGGAAACCAATGGCGGTAACAACAGCAACGGCGGCGGCGGCAGCAGCT
GCGGTAGTCGTCGCGCCGGTCTGTGCTGCAGCTGGCTGTCGTCGTTGCTC
CTAGGCTGGGATTGGCTCCCCATCGCTACGTCCGGGGCTCCTGTAGCCGG
AGGCGGCGGGCAGGCCCTGGGGGGAAGCGCCTCCGCAGCAATTCCTCGCC
ACTCGTCGGGCGGCACCGGTAGAGGCGGCGGCGGCAGCGGGGGGGCAGTT
GGTGATATGGCGGTGGCCTTG
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