mRNA_Ecto-sp13_S_contig20078.6560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20078.6560.1
Unique NamemRNA_Ecto-sp13_S_contig20078.6560.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Match: A0A6H5K644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K644_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.430e-32
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 VSTAWAALASSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL 183
            VSTAWAALA+SA+ ARVRWLTYWVAYGSWWHLSLC+GGILRVLPLAAHAELALLLWLQVPL
Sbjct:   41 VSTAWAALATSANIARVRWLTYWVAYGSWWHLSLCVGGILRVLPLAAHAELALLLWLQVPL 101
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BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.090e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 VSTAWAALASSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL 183
            VSTAWAALA+SADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL
Sbjct:  442 VSTAWAALATSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL 502
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BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.370e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   28 SSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVP 180
            +S   AR RWLTYW  +G +W+  + L  +L  LP A HA+LALLLWLQ+P
Sbjct:  489 NSQGGARTRWLTYWAVFGMYWYFQIALASLLAWLPFANHAQLALLLWLQLP 539
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K644_9PHAE3.430e-3293.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF13_ECTSI3.090e-3198.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEP2_9STRA5.370e-1052.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20078contigEcto-sp13_S_contig20078:212..394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score124.4
Seed ortholog evalue1.8e-26
Seed eggNOG ortholog2880.D8LF13
Model size183
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.TB2/DP1, HVA22 family
EggNOG OGs28M3K@1,2QTKE@2759
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463010.100942-CDS-Ecto-sp13_S_contig20078:211..3941681463010.100942-CDS-Ecto-sp13_S_contig20078:211..394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20078 212..394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20078.6560.1prot_Ecto-sp13_S_contig20078.6560.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20078 212..394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20078.6560.1

>prot_Ecto-sp13_S_contig20078.6560.1 ID=prot_Ecto-sp13_S_contig20078.6560.1|Name=mRNA_Ecto-sp13_S_contig20078.6560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
VSTAWAALASSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAE
LALLLWLQVPL
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mRNA from alignment at Ecto-sp13_S_contig20078:212..394-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20078.6560.1 ID=mRNA_Ecto-sp13_S_contig20078.6560.1|Name=mRNA_Ecto-sp13_S_contig20078.6560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20078:212..394- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCCACCGCTTGGGCCGCGCTGGCATCCTCTGCCGATAGTGCCCGGGT
CCGGTGGCTCACGTACTGGGTCGCCTACGGGAGCTGGTGGCACTTGTCTT
TGTGTCTGGGCGGGATTCTAAGAGTGTTGCCCCTCGCCGCACACGCCGAG
CTAGCGTTGTTGCTGTGGCTGCAGGTGCCGCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20078:212..394-

>mRNA_Ecto-sp13_S_contig20078.6560.1 ID=mRNA_Ecto-sp13_S_contig20078.6560.1|Name=mRNA_Ecto-sp13_S_contig20078.6560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20078:212..394- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCCACCGCTTGGGCCGCGCTGGCATCCTCTGCCGATAGTGCCCGGGT
CCGGTGGCTCACGTACTGGGTCGCCTACGGGAGCTGGTGGCACTTGTCTT
TGTGTCTGGGCGGGATTCTAAGAGTGTTGCCCCTCGCCGCACACGCCGAG
CTAGCGTTGTTGCTGTGGCTGCAGGTGCCGCTA
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