prot_Ecto-sp13_S_contig20078.6560.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig20078.6560.1
Unique Nameprot_Ecto-sp13_S_contig20078.6560.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length61
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Match: A0A6H5K644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K644_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.430e-32
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0 
Query:    1 VSTAWAALASSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL 61
            VSTAWAALA+SA+ ARVRWLTYWVAYGSWWHLSLC+GGILRVLPLAAHAELALLLWLQVPL
Sbjct:   41 VSTAWAALATSANIARVRWLTYWVAYGSWWHLSLCVGGILRVLPLAAHAELALLLWLQVPL 101
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BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.090e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 VSTAWAALASSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL 61
            VSTAWAALA+SADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL
Sbjct:  442 VSTAWAALATSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPL 502
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BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.370e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:   10 SSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVP 60
            +S   AR RWLTYW  +G +W+  + L  +L  LP A HA+LALLLWLQ+P
Sbjct:  489 NSQGGARTRWLTYWAVFGMYWYFQIALASLLAWLPFANHAQLALLLWLQLP 539
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20078.6560.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K644_9PHAE3.430e-3293.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF13_ECTSI3.090e-3198.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEP2_9STRA5.370e-1052.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004345TB2/DP1/HVA22-related proteinPFAMPF03134TB2_DP1_HVA22coord: 5..60
e-value: 3.1E-7
score: 30.2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..61
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20078contigEcto-sp13_S_contig20078:212..394 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20078.6560.1mRNA_Ecto-sp13_S_contig20078.6560.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig20078 212..394 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig20078.6560.1 ID=prot_Ecto-sp13_S_contig20078.6560.1|Name=mRNA_Ecto-sp13_S_contig20078.6560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
VSTAWAALASSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAE
LALLLWLQVPL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22