mRNA_Ecto-sp13_S_contig20076.6559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20076.6559.1
Unique NamemRNA_Ecto-sp13_S_contig20076.6559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20076.6559.1 vs. uniprot
Match: D8LGM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 9.170e-18
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 3 
Query:  354 MMLLLSLDGRAARIAPPFSAQHAKQVLASASARLHMPPVPRLQGPGATR 500
            MMLLLSL GRAARIAPPFSAQHAKQVLASASARLHMPPVPRLQGP  TR
Sbjct:    1 MMLLLSLHGRAARIAPPFSAQHAKQVLASASARLHMPPVPRLQGPAVTR 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20076.6559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGM5_ECTSI9.170e-1893.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20076contigEcto-sp13_S_contig20076:3..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score88.6
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LGM5
Model size501
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG OGs28PN9@1,2QWAD@2759
Cds size234
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463010.052174-CDS-Ecto-sp13_S_contig20076:2..511681463010.052174-CDS-Ecto-sp13_S_contig20076:2..51Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20076 3..51 -
1681463010.0632277-CDS-Ecto-sp13_S_contig20076:1087..12721681463010.0632277-CDS-Ecto-sp13_S_contig20076:1087..1272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20076 1088..1272 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463010.072888-UTR-Ecto-sp13_S_contig20076:1272..15381681463010.072888-UTR-Ecto-sp13_S_contig20076:1272..1538Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20076 1273..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20076.6559.1prot_Ecto-sp13_S_contig20076.6559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20076 3..1272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20076.6559.1

>prot_Ecto-sp13_S_contig20076.6559.1 ID=prot_Ecto-sp13_S_contig20076.6559.1|Name=mRNA_Ecto-sp13_S_contig20076.6559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MSNAGTVTRPRGNACRGRMMRPRACLTMVMMLLLSLDGRAARIAPPFSAQ
HAKQVLASASARLHMPPVPRLQGPGATR
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mRNA from alignment at Ecto-sp13_S_contig20076:3..1538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20076.6559.1 ID=mRNA_Ecto-sp13_S_contig20076.6559.1|Name=mRNA_Ecto-sp13_S_contig20076.6559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20076:3..1538- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCTGTGGTTGATTTTTCGCCAACGGATAAGGCGTCAACCCTGTTGG
TTTGTTTCTCGTATACCCCCCCTGTCAGGCTTGCCGCCACGCCACACGCC
ACATCTGATCTACTTTGACTGATCTGCCTACAGCGCGCACACGTGACCGA
AACAGCCCCTGTGCAACGAGAGAAAGCACGAAAAGAGTGCGCAAACACGA
GAAAAGCTCCCACGACAGCAGACAGAGATAGACCACACCGATTGCAAAAG
AGCGGAAAAGGACAAAATGTCCAACGCAGGCACCGTTACACGACCGCGAG
GAAACGCGTGCCGTGGAAGGATGATGAGGCCACGCGCTTGCTTGACGATG
GTGATGATGCTCTTGCTGAGCCTCGATGGAAGAGCTGCGCGGATCGCGCC
CCCCTTCTCCGCTCAGCACGCTAAGCAAGTCCTGGCGTCTGCATCAGCCA
GGTACACGTCGTTTCGTTCTTTTTTCCCGAGATTTTGGTTTGTGCTGGAT
CGGGTGGCTAGGTCATCCAACACCCCGCCCCACCCCCGTTCCCCCCCCGC
GGCCCTATAGATGTCCCCGGCCCTAGAAACTGTCTTCATGGTCATTGAAC
GTCTCCTCAGCAAGTTTTGGTGGCGGTAGGGCGAACGGGATCGGCTGGGG
GTTGTGTTTTGTGGATGTAAGTACTTTTAAACATTCCGAAGATGACAAGG
AAAAATTCTCGGCTTTTTCAGATGACTTGATTGCGGAGGGTAATCAGAAC
GGTCTTCCTCCCCCGACACCAGCCCCTAAAGTGATCCCCTTGACGCACGC
GTAGCAGCGTGTTGCATGTTGCCCGAGGGTCTTGGACCTGAAGCGGGAGG
GGAAGGCCAGGGAAACTACGAGTGATGTCCTGTTTTTCTCTCTCCAGATA
TTATGTCACGTTCTTGTCAACAGTACTTGAGTGGCTTGTGGTGGGGCGTT
GGTTGTTGGTCTTTTCGGGCGAAATCAGATCTCGGCACCAGCAACAAAGT
GACGCTGATAAAGTCGCTCCGTCACATTCTCTCGATGGGACATCTAAATA
TCTACGCGTACATGTACACCAGCATCACACCCCGCTGTTTACCGGTTCAT
AGGGACCGAATTTAACCGTGTCCCTGCCCTACTTCACCGCATATCAATTA
TTTTTCACCGCAGAAAGTTCATCTTTGGCCCCTCGCGTGTATTGCTGTGC
CAACACCAGGAGAGAAGTTGCAGATTGGAAACAATCCGATCATGTGAAGC
GTCGACCTGTACCATTGATCCTCTCCAGTTGCATACTCCCCCTGCGCGAT
TAGACACTTGCAAATCCGGTGGAGAATAGCGCTACAGCCGCATCCGTCAA
TGGTCGATACTCTTTGCAGGATCTCCTGACACTTGCATTTTCTTGGCTGT
CTTGCTACAGACGAACGCGGATCATATTGACAAATCGCTTCCATTCCCGC
CATCCTGCCCCCCCCCCTTCTCTCGCTCCCACCACAGGCTGCACATGCCC
CCCGTACCTAGATTACAAGGGCCCGGGGCGACCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20076:3..1538-

>mRNA_Ecto-sp13_S_contig20076.6559.1 ID=mRNA_Ecto-sp13_S_contig20076.6559.1|Name=mRNA_Ecto-sp13_S_contig20076.6559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20076:3..1538- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAACGCAGGCACCGTTACACGACCGCGAGGAAACGCGTGCCGTGG
AAGGATGATGAGGCCACGCGCTTGCTTGACGATGGTGATGATGCTCTTGC
TGAGCCTCGATGGAAGAGCTGCGCGGATCGCGCCCCCCTTCTCCGCTCAG
CACGCTAAGCAAGTCCTGGCGTCTGCATCAGCCAGGCTGCACATGCCCCC
CGTACCTAGATTACAAGGGCCCGGGGCGACCCGC
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