prot_Ecto-sp13_S_contig20076.6559.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig20076.6559.1
Unique Nameprot_Ecto-sp13_S_contig20076.6559.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length78
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20076.6559.1 vs. uniprot
Match: D8LGM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.130e-19
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0 
Query:   30 MMLLLSLDGRAARIAPPFSAQHAKQVLASASARLHMPPVPRLQGPGATR 78
            MMLLLSL GRAARIAPPFSAQHAKQVLASASARLHMPPVPRLQGP  TR
Sbjct:    1 MMLLLSLHGRAARIAPPFSAQHAKQVLASASARLHMPPVPRLQGPAVTR 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20076.6559.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGM5_ECTSI4.130e-1993.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..40
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..78
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 24..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 37..40
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..40
score: 0.633

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20076contigEcto-sp13_S_contig20076:3..1272 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20076.6559.1mRNA_Ecto-sp13_S_contig20076.6559.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig20076 3..1538 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig20076.6559.1 ID=prot_Ecto-sp13_S_contig20076.6559.1|Name=mRNA_Ecto-sp13_S_contig20076.6559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MSNAGTVTRPRGNACRGRMMRPRACLTMVMMLLLSLDGRAARIAPPFSAQ
HAKQVLASASARLHMPPVPRLQGPGATR
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