mRNA_Ecto-sp13_S_contig20072.6557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20072.6557.1
Unique NamemRNA_Ecto-sp13_S_contig20072.6557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20072.6557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20072contigEcto-sp13_S_contig20072:1610..2433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size370
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.9423685-CDS-Ecto-sp13_S_contig20072:1609..19041681463009.9423685-CDS-Ecto-sp13_S_contig20072:1609..1904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20072 1610..1904 -
1681463009.9530551-CDS-Ecto-sp13_S_contig20072:2359..24331681463009.9530551-CDS-Ecto-sp13_S_contig20072:2359..2433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20072 2360..2433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20072.6557.1prot_Ecto-sp13_S_contig20072.6557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20072 1610..2433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20072.6557.1

>prot_Ecto-sp13_S_contig20072.6557.1 ID=prot_Ecto-sp13_S_contig20072.6557.1|Name=mRNA_Ecto-sp13_S_contig20072.6557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
TRPLRRTGGPSDHSTVENKISSNTRLLREHENEKTVKDVVRRLRQLGCAI
ASWPSLPLDLSKDQTSPSPFDPINRANTTSAGKSFLQHAPGTARRLPWRR
MPIRLGNAGTGTQRREPPGGTTR
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mRNA from alignment at Ecto-sp13_S_contig20072:1610..2433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20072.6557.1 ID=mRNA_Ecto-sp13_S_contig20072.6557.1|Name=mRNA_Ecto-sp13_S_contig20072.6557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20072:1610..2433- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCGGCCTCTGCGACGAACTGGCGGTCCGTCGGATCACTCAACTGTGGA
GAACAAGATTTCGAGCAACACTAGGTTCTTAGCCACCGAATGAAACGTTG
GACGGGGTGGGGGCTCGGCAACGTCGACAGTCGTTTGACGTGATCTTCAA
TGCCCCACATTGACGGTTACGTGGCAGGATATTTTAGAACCTACCTCGAG
CAACGTTTGGGATAGGAAACACGGTGATTTTTCCTTCGGGAGGGGAGGAC
CAGATGATACCGAGTTGAAACTTTCCGCGCGCTGTAGTCCCGCCCGTGTC
CCGGTTAGAAGCGCAGCTGAGCTCCCAACGCAATTTGACACTGGTGGCTG
CTCCCACCGCCGTTAGCCTAGCCTTACCTTACCCGTAACAGGATTCCCGA
GGAACCCTGCTGCCCCCAGTTCTTGACCATTGTTTATCCGTGCCTCGTAT
CTCGCCCCTTTCTCCCATGTGCTCACGTAGCACTCAATTGCGTCGTACAC
ATATCGTGCCGTCGCCGACTTCCGTGCAGGCTGCTTCGGGAACACGAGAA
CGAGAAGACCGTGAAGGATGTTGTGAGACGGCTACGACAATTGGGATGTG
CGATTGCCTCGTGGCCGTCGTTGCCGCTAGATTTGTCAAAAGATCAGACC
AGCCCATCTCCTTTCGATCCAATAAACAGGGCAAATACTACTTCAGCAGG
GAAGTCGTTCCTGCAGCACGCCCCCGGTACGGCCAGACGATTACCTTGGC
GGAGAATGCCGATTCGACTTGGCAATGCTGGTACGGGCACGCAGCGCAGA
GAGCCTCCAGGCGGCACCACCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20072:1610..2433-

>mRNA_Ecto-sp13_S_contig20072.6557.1 ID=mRNA_Ecto-sp13_S_contig20072.6557.1|Name=mRNA_Ecto-sp13_S_contig20072.6557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20072:1610..2433- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCGGCCTCTGCGACGAACTGGCGGTCCGTCGGATCACTCAACTGTGGA
GAACAAGATTTCGAGCAACACTAGGCTGCTTCGGGAACACGAGAACGAGA
AGACCGTGAAGGATGTTGTGAGACGGCTACGACAATTGGGATGTGCGATT
GCCTCGTGGCCGTCGTTGCCGCTAGATTTGTCAAAAGATCAGACCAGCCC
ATCTCCTTTCGATCCAATAAACAGGGCAAATACTACTTCAGCAGGGAAGT
CGTTCCTGCAGCACGCCCCCGGTACGGCCAGACGATTACCTTGGCGGAGA
ATGCCGATTCGACTTGGCAATGCTGGTACGGGCACGCAGCGCAGAGAGCC
TCCAGGCGGCACCACCCGC
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