mRNA_Ecto-sp13_S_contig2007.6555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2007.6555.1
Unique NamemRNA_Ecto-sp13_S_contig2007.6555.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: D7FPU9_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU9_ECTSI)

HSP 1 Score: 733 bits (1892), Expect = 1.980e-254
Identity = 518/580 (89.31%), Postives = 525/580 (90.52%), Query Frame = 1 
Query:  133 MEEIIAGKLLGLAAVAANSAAVDLAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRSSPALKLPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPEESWAEEVRETIPEEPLPEYLAALWDFAEGKSHSTSKAPGSGVASSSXXXXXXXX--PISPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGSMVTSVLSEQASKQPAPAPATAAGADPVAAALNPGQALEDASALCAFMEAAQTRSVKRVRVAPQQQQQRRKDGNTSTEGAKQMQAQPRGWSDQGSTTSESRGGSDLSEEDAANERKSADGSXXXXXXXXXXXXXSRDSGAVLPPEFWTSRQVLERYVLPRQQFLQG 1866
            MEE+IAGKLLGLAAVAANSAA DL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQL+IWGLRQERQRLLQLSTDHRTAGVLLALSCSP QCQEGPAG+Q PSSRSSPALKLPKAAATP ASRS KGS RDWG+EVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPE++WAEEVRETIPEEPLPEYLAALWDFAEGKSHSTSKAPGSGVAS  XXXXXXXX  P+SPP                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  X  X   LAGSM  SVLSEQASKQPA APATAAGADPVAAA NPGQALEDASALCAFMEAAQTRSVKRVRVAPQQQ   RKDGNTSTE AKQMQAQPRGWSDQGSTTSESRGGSDLSEEDAANERKSADGS      XXXXXX SRDSGAVLPPEFWTSRQVLERYVLPRQQ LQG
Sbjct:    1 MEEMIAGKLLGLAAVAANSAAADLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGSQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPEDNWAEEVRETIPEEPLPEYLAALWDFAEGKSHSTSKAPGSGVASXXXXXXXXXXXXPVSPPATPRMPSAGAFRQSRQTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPXRPXSPPLAGSMAMSVLSEQASKQPAVAPATAAGADPVAAASNPGQALEDASALCAFMEAAQTRSVKRVRVAPQQQXXXRKDGNTSTESAKQMQAQPRGWSDQGSTTSESRGGSDLSEEDAANERKSADGSGASTLSXXXXXXSSRDSGAVLPPEFWTSRQVLERYVLPRQQLLQG 580
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A6H5L2A4_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A4_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 2.070e-113
Identity = 247/275 (89.82%), Postives = 249/275 (90.55%), Query Frame = 1 
Query:  130 MMEEIIAGKLLGLAAVAANSAAVDLAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRSSPALKLPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM 954
            MMEE+IAGKLLGLAAVAANSAA DLA  G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQL+IWGLRQERQRLLQLSTDH TAGVLLALSCSP QCQEGPAGNQ  SSRSSPALKLPKAAATP ASRS KGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGD           XXX SR AKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM
Sbjct:    1 MMEEVIAGKLLGLAAVAANSAAADLAATGVESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHHTAGVLLALSCSPQQCQEGPAGNQHQSSRSSPALKLPKAAATPAASRSSKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDXXXXXXXXXXXXXXXSRAAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM 275
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A6U4EHK2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EHK2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.670e-12
Identity = 89/242 (36.78%), Postives = 114/242 (47.11%), Query Frame = 1 
Query:  331 GKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRSSPALKLPKAAATPTASRSCKGSSRDWGQEVASHED------ALRKITQEFERM-DGS-QQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPEESWAEE 1032
            G+    P   K    +R  R RERNR+HARKTRQRKKQ ++ELQ +I  L+ E   L Q   D  TA VLL +S        G A   + S  S    KL                     +EV   E       A   +    E   DG  ++   DE+       K     R  K T  +R  +RRERNRMHAKRTR+RKKLF+E    +I KM+ EN Q+   +R SG++LPE+   EE
Sbjct:  156 GRSSSPPPQTKVKEVERVHRMRERNRMHARKTRQRKKQQMKELQARIDKLKHEGTLLRQHIFDRYTANVLLVMS--------GKADRSETSQLS----KL---------------------EEVMDREGINCLLGAASALQPRLEMTADGKLKETAPDED-------KDYKPRRRGKYTPEERDRVRRERNRMHAKRTRDRKKLFLEESENLIFKMEEENVQMRRYLRQSGLELPEQLLREE 357
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A7S4VPU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPU5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.450e-9
Identity = 67/206 (32.52%), Postives = 109/206 (52.91%), Query Frame = 1 
Query:  394 RERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRSSPALK-----LPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQ-EFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRA 993
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   +  TA +LL + C     ++G +G+  P  R    LK     +P A+  P              +++ +   A  ++   + E +     AG+  +   +       G   +K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  + +
Sbjct:   11 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCK----EKGESGDVDP--RVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYE----LLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A7S4W4V3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4V3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.360e-9
Identity = 67/206 (32.52%), Postives = 109/206 (52.91%), Query Frame = 1 
Query:  394 RERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRSSPALK-----LPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQ-EFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRA 993
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   +  TA +LL + C     ++G +G+  P  R    LK     +P A+  P              +++ +   A  ++   + E +     AG+  +   +       G   +K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  + +
Sbjct:   11 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCK----EKGESGDVDP--RVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYE----LLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A7S4RSS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSS5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-8
Identity = 67/206 (32.52%), Postives = 109/206 (52.91%), Query Frame = 1 
Query:  394 RERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRSSPALK-----LPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQ-EFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRA 993
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   +  TA +LL + C     ++G +G+  P  R    LK     +P A+  P              +++ +   A  ++   + E +     AG+  +   +       G   +K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  + +
Sbjct:  183 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCK----EKGESGDVDP--RVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYE----LLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 378
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A835ZF21_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF21_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8
Identity = 80/261 (30.65%), Postives = 115/261 (44.06%), Query Frame = 1 
Query:  376 DRKARNRERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALS--CSPTQCQEGPAGNQQPSSRSSPALKLPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSD-----RTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLP--------------EESWAEEVRETIPEEPLPEYLAALWDFA 1095
            DR+ R+RERNRLHARKTRQRKK  ++ LQ +I  L++E   L +   +    G L  +    +        A   QP    +   K+ + A    A      +  DW  +++ H  AL  +      MD    A   + AA      XXX                R  LRRERNRMHAKR R+RKKL V+A + ++  +   NA     +R + + LP                 +AE+       +PLPE +  LW++A
Sbjct:   23 DRRKRSRERNRLHARKTRQRKKAQIESLQDRIRALKREGDLLHKQQKEQEVLGTLALMQSHAAAVPAAVAAAHGAQPPQDEAHMGKISELAQAAIAV----WAEADWAAQLSEHCAALTALMNLCNTMDSQYMASLSDAAAAERAXXXXXXXXXXXXXXXXXXAALRAQLRRERNRMHAKRARDRKKLLVDASTAIVGVLDARNALARAHLRRAALSLPPALAATLSTAAAAPSSPYAED---DAASDPLPEDVFELWEYA 276
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: BZP14_PHATC (bZIP transcription factor 14 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=BZP14_PHATC)

HSP 1 Score: 69.7 bits (169), Expect = 1.370e-8
Identity = 77/226 (34.07%), Postives = 110/226 (48.67%), Query Frame = 1 
Query:  358 RKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLAL-----SCSPTQ-----------CQEGPAGNQQPSSRSSPALKLPKA-------AATPTASRSCKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVEN 966
            +KA   DR  R+RERNR+HARKTRQRKK+ +Q L+ +   L+ E+ RL Q+  +  TA +L+ L     S SP +            +E P  ++ P     PAL LP          A P  + S +  S   G+EVAS  D                 +GD+++           G   +K T  +   +RRERNRMHAKRTR+RK++F E  + M   ++ EN
Sbjct:  112 KKADTDDRVQRSRERNRIHARKTRQRKKEQMQSLEGRATDLKHEQIRLKQIINEKNTANILVGLFSKGQSQSPNEDPRVEALMYRSVEEIPDPSKIPEL---PALILPGQHASKKIKVAVPVVAASPQSMSDGGGEEVASTSDV----------------SGDEQQVPDDGIDYDLLGKDRSKCTPEELDQIRRERNRMHAKRTRDRKRIFTEEMAEMCRILEEEN 318
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A6U2ACZ3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2ACZ3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.280e-8
Identity = 69/213 (32.39%), Postives = 101/213 (47.42%), Query Frame = 1 
Query:  394 RERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRS---SPALKLPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXG-------SRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGI 1002
            RERNR+HARKTRQRKK+H+Q LQ +   L+ E+ RL Q   +  TA +LL +         G A +  P         A ++P A+  P           +  +  A+   A  +       +DG    G  E    H G     G          +K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  +    +
Sbjct:   32 RERNRMHARKTRQRKKEHMQSLQNRADELKNEQLRLKQAINEKNTASILLGMFSRDGPASGGSAKDVNPKVEELLRRSAEEIPDASKIPELPALILPGQHNSKKNKAA---AQMQPPAAAAPLDGGGLEGSPEMGPQHGGLMPDDGIDYELLSKDRSKCTPAELDRIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLESENGLLQGHLEGLSV 241
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Match: A0A7S2REX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REX0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.840e-7
Identity = 74/215 (34.42%), Postives = 105/215 (48.84%), Query Frame = 1 
Query:  358 RKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEGPAGNQQPSSRSSPALKLPKAAATPTASRSCKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGI 1002
            R+  + +R  R+RERNR+HA+KTRQRKK  ++ LQ +I  L+ E   L Q+  +  TA +LL +S        G A N   +S  S + + P    +       K +S    Q +    DA                  DD+E A     +     R  K T ++R  +RRERNRMHAKRTR+RKKLF+E     I  M+ ENA+L   +   G+
Sbjct:  189 RRLSSEERLQRSRERNRMHAKKTRQRKKMQIEALQARIDELKTEFLGLRQIVDERYTAYILLVMS--------GAAENGSGASFLSSSAEGPSTLGS-------KFTSASLAQIIGRDPDAE-----------------DDKEEAPQKRTR-----RRGKYTPAEREHIRRERNRMHAKRTRDRKKLFLEESERKIAVMEEENAKLRDFLTRHGM 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2007.6555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FPU9_ECTSI1.980e-25489.31BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L2A4_9PHAE2.070e-11389.82BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U4EHK2_9STRA1.670e-1236.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S4VPU5_9STRA3.450e-932.52Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4W4V3_9STRA8.360e-932.52Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RSS5_9STRA1.200e-832.52Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A835ZF21_9STRA1.300e-830.65BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
BZP14_PHATC1.370e-834.07bZIP transcription factor 14 n=1 Tax=Phaeodactylum... [more]
A0A6U2ACZ3_9STRA3.280e-832.39Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2REX0_9STRA3.840e-734.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2007contigEcto-sp13_S_contig2007:4157..9561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score75.9
Seed ortholog evalue7.1e-11
Seed eggNOG ortholog2850.Phatr45314
Model size2854
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Basic region leucine zipper
EggNOG OGs2CYZ1@1,2S7C7@2759,2XC3T@2836
Ec32 ortholog descriptionBasic leucine zipper transcription factor
Ec32 orthologEc-18_001760.1
Cds size1740
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.826366-UTR-Ecto-sp13_S_contig2007:4156..51411681463009.826366-UTR-Ecto-sp13_S_contig2007:4156..5141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2007 4157..5141 -
1681463009.856254-UTR-Ecto-sp13_S_contig2007:8972..90481681463009.856254-UTR-Ecto-sp13_S_contig2007:8972..9048Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2007 8973..9048 -
1681463009.8666053-UTR-Ecto-sp13_S_contig2007:9508..95611681463009.8666053-UTR-Ecto-sp13_S_contig2007:9508..9561Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2007 9509..9561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.8381054-CDS-Ecto-sp13_S_contig2007:5141..60561681463009.8381054-CDS-Ecto-sp13_S_contig2007:5141..6056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2007 5142..6056 -
1681463009.8477106-CDS-Ecto-sp13_S_contig2007:8147..89721681463009.8477106-CDS-Ecto-sp13_S_contig2007:8147..8972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2007 8148..8972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2007.6555.1prot_Ecto-sp13_S_contig2007.6555.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2007 5142..8972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2007.6555.1

>prot_Ecto-sp13_S_contig2007.6555.1 ID=prot_Ecto-sp13_S_contig2007.6555.1|Name=mRNA_Ecto-sp13_S_contig2007.6555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=580bp
MMEEIIAGKLLGLAAVAANSAAVDLAVAGGESEEEEEDRCSWSRDGGGDT
ASHEEGGSEDEEEDDRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTR
QRKKQHVQELQLQIWGLRQERQRLLQLSTDHRTAGVLLALSCSPTQCQEG
PAGNQQPSSRSSPALKLPKAAATPTASRSCKGSSRDWGQEVASHEDALRK
ITQEFERMDGSQQAGDDEEAATHAGGKGGGGSRGAKGTLSDRTALRRERN
RMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPEESWAE
EVRETIPEEPLPEYLAALWDFAEGKSHSTSKAPGSGVASSSSSAAATATP
ISPPATPRLPSAGAFRQSRQTSSSSSASSSSCSSYFSTHSRRRLSSAAIT
KVPPRPPSPPLAGSMVTSVLSEQASKQPAPAPATAAGADPVAAALNPGQA
LEDASALCAFMEAAQTRSVKRVRVAPQQQQQRRKDGNTSTEGAKQMQAQP
RGWSDQGSTTSESRGGSDLSEEDAANERKSADGSAASNLSSEEEAASSRD
SGAVLPPEFWTSRQVLERYVLPRQQFLQG*
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mRNA from alignment at Ecto-sp13_S_contig2007:4157..9561-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2007.6555.1 ID=mRNA_Ecto-sp13_S_contig2007.6555.1|Name=mRNA_Ecto-sp13_S_contig2007.6555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2007:4157..9561- (Ectocarpus species13 EcNAP12_S_4_19m)
TAGGGTCAAATCTTCAGAGGCTTCCTCGCCCTGCCGCCACAAGGGCGAGA
CAGGTGAGCTTGTAAGGGTACCTTCTCTGCTTTGCGATGAATGGTTTCAG
TGGTGTAGGGAAAAGAGAGTCAGCATGGATATTTTGCGCGTGTGCCATTG
CAGGGTAGACATGGGCTGCACGTTATTTGCTCTCGCATGTTGTTCGCCAC
CTTGTCAACTGCGCTCCAGACTTCGTCTTCGCTACCCTCCACGGGAGCGC
GAGGGTGAGTGTTGTTGGTGTTCTGTTCGACGTGCCCTTGCGTTCCCATG
GTCGCCGACTGTTCCTTCACTTCACTCTGTTTTACACGTGTATGGAGCAA
GCTGCTGTCATCGAACCCACACCACTGACTCAAAAAATGGGCTTCGCGGC
TGCCCCTCCCCCTTCCCATATGTCCACCGAAGCCGGCCGTACAACTTGAC
CCCGCTTCGCCCTTCCCTTCCCTGGCTACCGCTCTGATTCCTCACTGTCC
TCGAGCGTGTCAGCCTGAACGCGAATAACAACCCATTCGAGGAACAGCAT
CAAAGAGGAAATATACAGATCTGAAAGAGGCAGCGGCACATGATGGAAGA
GATAATCGCTGGCAAGCTCCTCGGCCTTGCTGCCGTTGCAGCCAACTCGG
CGGCGGTGGACCTGGCCGTGGCAGGCGGCGAGTCAGAGGAGGAGGAGGAG
GACAGATGTAGCTGGTCACGCGATGGTGGTGGCGACACCGCTTCGCACGA
GGAGGGTGGCAGCGAGGACGAGGAGGAGGACGACAGGGCCGGGAAGCGGA
AGATGACACCAGATGACAGAAAAGCTGTTGCAGCCGACAGAAAGGCTCGC
AACCGCGAGCGGAATCGCCTCCACGCGCGCAAGACGCGCCAGCGGAAGAA
GCAGCATGTGCAGGAGCTGCAGCTACAGATCTGGGGGCTTCGCCAGGAAC
GCCAGCGCCTCCTTCAGCTGTCCACCGACCACCGTACCGCGGGGGTGCTC
CTCGCCCTCAGCTGCTCCCCCACCCAGTGCCAGGAAGGGCCGGCTGGAAA
CCAACAACCATCATCTCGCTCGTCCCCGGCGTTGAAACTCCCCAAGGCGG
CCGCGACTCCCACGGCAAGTAGGAGTTGCAAGGGCAGCAGCAGGGATTGG
GGCCAGGAGGTCGCCTCGCACGAAGACGCTCTGCGCAAGATTACACAAGA
GTTTGAGAGGATGGACGGGAGCCAGCAGGCCGGGGACGACGAGGAGGCTG
CAACGCACGCCGGAGGCAAGGGCGGCGGCGGCTCGCGCGGAGCGAAGGGA
ACGCTGTCCGACAGGACTGCACTGCGGAGGGAGCGGAACCGCATGCACGC
CAAGCGCACGCGTAACCGCAAGAAGCTGTTCGTGGAGGCCTGCAGCGTCA
TGATCGACAAGATGGTGAGTGAACCAAAAAACACGTCTCTTGCGTTGGAT
TTTTTTGAAAAAAATATGTCCAGCGTCCTTGGTCTAAATCACGCGGTTGT
GGAGTCGGTTGGGAGGACACGTGTTCGTTTGGAACTTTTCCCGAACGACG
GCTGCAGCAGATTCCCCGCCACTCGGCTTTTCGCATCCTTGGGAGTTACC
TCTCTATGAAGAGAGCGTTCCAGTTGGCGTACTCTCCACACCTCTCGCGC
CCGAGTTGTTGTACGATGTGCATATGCGTGGAAGAAAATGCCGACGGGCC
TTGGTGCTTGGTGAACCAGCGAACCAGCTCTATCTGATGCACCGAATTGC
CCGCCTTCAGACTTTTCCATGTGACATACTTCTATGCATGCATGGCCCAG
AGCACGTCGGTTTCATTCGACGCCTACATTGTTTCATTGCCGAACTTGTG
CTGCGTTTGGTTGCCCACAATTGTTTCTTCTTTCACCTTGGTTGTTGCCG
ACTCAGCCTTGCTCCTCCAATAGTGCAACATCAATTAGTCAGAGACGTTG
TATGACGTACCAGGACTGAATTTTCCGCGCCATCCGTACCCTTTGCGGGG
TGTTTTCTGTCACCCGTTGTTCGTCATCATTTATTAGAAGTCTTGCTTGC
GCCCTCTCCCCGCATCGAGCTTGCGAGCTAGAATTCGTGGCTTTCCGTCT
CAACTGGTCTCTGTGTACCGCATCTACGTGAGTAGATGTCCATCGTTGGA
CACGTGTTTACAGCGTTGGGCAGACCAGTACTATTCGGAAGACTTTTCTT
ACTTTTGTTGACCACCATCGTTGTTCCTTTGCGTTGGCTGTGGGGCCTGA
ACGTTTTTCCTCCTTTTTGTAGGGGTATGCAACCATATGTAAATGTGACT
CAAGCGTGCACCCTCTGACAACCAGAGATTCAAAGTTTCGCGCAAAGGAT
CACATGGCATATTTCGTCCGCGTGTTGTTACCCATGAGCATTGGCCTGCC
GTAATCAAATCATTGTTCTTTACAACAGCTATCGCCGAGAAAACTGGGGA
AATATGGGCATGACCATCATCCGCTTGATAATAGACTCTGCCCCGCTGCT
GTCCCCCACGGAAAATGCCTTACGGATTCGCGGTGTTGTATCAAGAAAAA
AATATGCCTCATCAGGCAGGCAGGGCGTACCCCACTTTTTCCTTCTTGCA
TAAACCTCGCGACCACGCTCAGTAGCTGCCGAGTTAGTCTCCGCTCGACG
ATTCTTACCACATTTTTTTCCTAAGTGCTATGTACCTCCTGAGGTGCGGG
TTGTCGGTGGTTGTTAACCTTAATTCGTCATGCACCACAACCGCGAAGTT
TCAGTCTCAATGTTTGCTCCCGCTGGCCACTTCTCCCCGAGTTGATGAAA
CCTCTTGAGAGTTGAGTAGAGCAGCGCGTCGTCAGTCCAGCCAGACAGCC
TCCAGTGCAACAAATTGGTTGATTTCAACTGGTTGAATGGATGGGTAAGC
ACTTATCAAGGCTTCAATATTTCTTTTGGAGTAGTTCATGCACCATAAGA
CAAGAACGGCAGTTAAACAGCGCGATGTTGGCTGACGCAGCGTCTGTCAA
TAATGACGCGATGGATCCTTGTGGGAGATCAGTTTTGCGAGCGGATTATT
GGATGATTGTGTCGAGGGTTCTATGTCACACGGCAAGTGTTGGGGATAAC
TGGTCGTTCAACAATTTTCCTTTGTAGTTGCTCGTTGTGTCGGATACGGC
CAGCGTCGAAAGTGAACCTGTCCGCTGTGAAAGATATCTAAAATTCGCTC
ACGCACGACTGGGTGCGCAGTCGTGCATAAACGCGATGTTTTTTCTGGAA
AACGCTTCATCGTTTGGAGGACCGTAAGCCGTGGGTCTCGTTTTCCTTGA
AAATATTTCTGGGTGTTTGCAGTGTTGATGCGCGTGTTGTTTTTCCTTGT
GAGCGAACGATCGATGGACATTGCTGAACCAGCTGGAGGTTTATGAACTC
CAAGTTGCTACACTTTAATTGAAAGAGTCTTCAACCCGTTACCCTGCTCT
GATGTTTTTGCCTCCCTCCTGCCCTTCTCTACACGTCCCCCCTCGAACCT
TCCAGAAAGTGGAAAATGCCCAACTCGAGCACGAAATCCGAGCGTCGGGG
ATCCAGCTGCCAGAAGAAAGTTGGGCAGAGGAGGTGCGAGAGACGATCCC
CGAAGAGCCCCTCCCGGAGTACCTGGCGGCGCTCTGGGACTTCGCGGAGG
GCAAAAGCCACAGCACCTCCAAGGCACCAGGTTCAGGGGTTGCCAGCAGC
AGCAGCAGCGCGGCCGCTACGGCCACGCCGATCTCGCCCCCAGCAACGCC
CAGATTGCCTTCCGCGGGTGCATTCCGGCAGAGTCGCCAGACGTCGTCGT
CTTCCTCGGCGTCCTCGTCTTCTTGCTCCTCGTATTTCTCGACCCATAGC
CGACGGCGACTAAGCAGCGCGGCCATCACGAAGGTCCCGCCGCGGCCCCC
GTCGCCGCCCCTAGCGGGCTCGATGGTGACGTCGGTTTTGTCGGAGCAGG
CATCTAAGCAGCCGGCGCCGGCACCCGCAACGGCAGCAGGTGCTGACCCT
GTGGCGGCGGCATTGAACCCCGGGCAGGCACTCGAGGACGCCTCGGCGCT
GTGCGCGTTTATGGAGGCAGCGCAGACGAGGTCTGTGAAGCGCGTCCGCG
TGGCGCCCCAACAGCAACAGCAGCGACGAAAGGATGGCAACACGAGCACC
GAGGGCGCGAAGCAGATGCAGGCGCAGCCCCGGGGTTGGTCGGACCAAGG
CAGCACGACGTCGGAGAGCCGCGGCGGGTCGGACTTGTCTGAGGAGGACG
CTGCGAACGAGAGGAAATCGGCAGACGGAAGCGCCGCTTCGAATTTGAGC
AGCGAGGAAGAGGCGGCATCGAGTCGGGACAGCGGCGCCGTCCTACCTCC
CGAGTTTTGGACGTCGCGCCAGGTTCTTGAGCGATATGTGTTACCCCGGC
AGCAGTTTCTACAGGGCTGACTGCGAGACCACGGGAGCGTTTTTTCTCAC
ACCGCGGCGGACGACTTTTGCCCCTGAGGGGTTTGACGTTACAGGCTTAC
GGAGGGGGTCATGTGGAACGAAAAAGGTTGTACGCGTGTTTTGGGAGTAG
AGGATACCGGTGTACTCACCTTCGTCACCAGACTTGGATTTGTCTGAAAT
CTCCGTGAGCGGTGTCAAGTTCTCCGGAGAAAGGGTTTGTGTGTGGTGGA
GGTAGATTGGTTTCCCGAGAGAGGGCGACTTGACTGCCCTGCTTTTGTCT
TTTTGCGTCAGGTGACATTTGAGTTTTGGCGAAGTGGGCTCTTCTTTCTC
TCCCAGCGTGTCTTCTTGGAAAGCGTTATTTAGTAAATGCTCCGTGTGTT
AGGCTACAGAGGAGGGATTTACCCTCGTCCCACCAAAAGTGGTCGTTTGC
TTTCGTCTGGCCGCAGGTGTGGTGTATAATTTGATACCTAGAACTAAACG
TTGATGGAGCGAGCCAATCGATTGATTTTGTGTTGGTTACAGGCGTGGTC
TCGCGGAAAAGAGTTGTTTCAGAGCAAGATTCTCGGGGAGACATACTTCC
ACCTGTACAAATGAAAGCTGTGTGGATAACGGCGTCTGTTTTTACTGTGT
AAAGAGGGCGTCGAATTTTGTTTTTCCCGTGTATTGTCTAGTTCTTGTCG
ACTTCTTCTGAATTCTCCTATTTTGCGTGTTATAGAGGTTGTTGTTGCGA
TGGTAGAGATGATGACGGAGTGCCTTGGCTCGATTCGCTGTACCTTGTAC
TCCCCCGCGTGTGGGCGGGAGAAGTTCGTCCATATATTTAGCGGGTTGCA
TATGACAGTCTTATTGCTTGGTAGACATTTGTGCGGACACTTGCTGCCTT
TGTCCGCGGTTCAAAACACATAGAGGTGTTAGTGTGTGGGGGCGTACGGA
GGAGCCCATTTTTCTCTCTTGTACAAGGTGCACCCAATACAAATTAAGAT
CACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2007:4157..9561-

>mRNA_Ecto-sp13_S_contig2007.6555.1 ID=mRNA_Ecto-sp13_S_contig2007.6555.1|Name=mRNA_Ecto-sp13_S_contig2007.6555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2007:4157..9561- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGAAGAGATAATCGCTGGCAAGCTCCTCGGCCTTGCTGCCGTTGC
AGCCAACTCGGCGGCGGTGGACCTGGCCGTGGCAGGCGGCGAGTCAGAGG
AGGAGGAGGAGGACAGATGTAGCTGGTCACGCGATGGTGGTGGCGACACC
GCTTCGCACGAGGAGGGTGGCAGCGAGGACGAGGAGGAGGACGACAGGGC
CGGGAAGCGGAAGATGACACCAGATGACAGAAAAGCTGTTGCAGCCGACA
GAAAGGCTCGCAACCGCGAGCGGAATCGCCTCCACGCGCGCAAGACGCGC
CAGCGGAAGAAGCAGCATGTGCAGGAGCTGCAGCTACAGATCTGGGGGCT
TCGCCAGGAACGCCAGCGCCTCCTTCAGCTGTCCACCGACCACCGTACCG
CGGGGGTGCTCCTCGCCCTCAGCTGCTCCCCCACCCAGTGCCAGGAAGGG
CCGGCTGGAAACCAACAACCATCATCTCGCTCGTCCCCGGCGTTGAAACT
CCCCAAGGCGGCCGCGACTCCCACGGCAAGTAGGAGTTGCAAGGGCAGCA
GCAGGGATTGGGGCCAGGAGGTCGCCTCGCACGAAGACGCTCTGCGCAAG
ATTACACAAGAGTTTGAGAGGATGGACGGGAGCCAGCAGGCCGGGGACGA
CGAGGAGGCTGCAACGCACGCCGGAGGCAAGGGCGGCGGCGGCTCGCGCG
GAGCGAAGGGAACGCTGTCCGACAGGACTGCACTGCGGAGGGAGCGGAAC
CGCATGCACGCCAAGCGCACGCGTAACCGCAAGAAGCTGTTCGTGGAGGC
CTGCAGCGTCATGATCGACAAGATGAAAGTGGAAAATGCCCAACTCGAGC
ACGAAATCCGAGCGTCGGGGATCCAGCTGCCAGAAGAAAGTTGGGCAGAG
GAGGTGCGAGAGACGATCCCCGAAGAGCCCCTCCCGGAGTACCTGGCGGC
GCTCTGGGACTTCGCGGAGGGCAAAAGCCACAGCACCTCCAAGGCACCAG
GTTCAGGGGTTGCCAGCAGCAGCAGCAGCGCGGCCGCTACGGCCACGCCG
ATCTCGCCCCCAGCAACGCCCAGATTGCCTTCCGCGGGTGCATTCCGGCA
GAGTCGCCAGACGTCGTCGTCTTCCTCGGCGTCCTCGTCTTCTTGCTCCT
CGTATTTCTCGACCCATAGCCGACGGCGACTAAGCAGCGCGGCCATCACG
AAGGTCCCGCCGCGGCCCCCGTCGCCGCCCCTAGCGGGCTCGATGGTGAC
GTCGGTTTTGTCGGAGCAGGCATCTAAGCAGCCGGCGCCGGCACCCGCAA
CGGCAGCAGGTGCTGACCCTGTGGCGGCGGCATTGAACCCCGGGCAGGCA
CTCGAGGACGCCTCGGCGCTGTGCGCGTTTATGGAGGCAGCGCAGACGAG
GTCTGTGAAGCGCGTCCGCGTGGCGCCCCAACAGCAACAGCAGCGACGAA
AGGATGGCAACACGAGCACCGAGGGCGCGAAGCAGATGCAGGCGCAGCCC
CGGGGTTGGTCGGACCAAGGCAGCACGACGTCGGAGAGCCGCGGCGGGTC
GGACTTGTCTGAGGAGGACGCTGCGAACGAGAGGAAATCGGCAGACGGAA
GCGCCGCTTCGAATTTGAGCAGCGAGGAAGAGGCGGCATCGAGTCGGGAC
AGCGGCGCCGTCCTACCTCCCGAGTTTTGGACGTCGCGCCAGGTTCTTGA
GCGATATGTGTTACCCCGGCAGCAGTTTCTACAGGGCTGA
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