mRNA_Ecto-sp13_S_contig20055.6548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20055.6548.1
Unique NamemRNA_Ecto-sp13_S_contig20055.6548.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: D7FU24_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU24_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.110e-25
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            MSLQALIEEKLTTELTPSHIEVINESGNHGA LGAESHFKVIVVSTKFEG
Sbjct:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGAPLGAESHFKVIVVSTKFEG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: A0A2E7XL64_9GAMM (BolA family transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XL64_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 1.550e-14
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            MSLQA+IE+KLT E++  ++EV+NESGNH    G+ESHFKV+VVS +FEG
Sbjct:    1 MSLQAIIEKKLTNEISLGYLEVVNESGNHSVPAGSESHFKVVVVSDEFEG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: A0A368NFY8_9GAMM (Transcriptional regulator BolA n=3 Tax=Corallincola TaxID=1775176 RepID=A0A368NFY8_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 3.590e-13
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            MS+Q  IE+KL     P H+EVINESGNH    GAESHFKV++VS +FEG
Sbjct:    1 MSVQNTIEKKLLQRFAPVHLEVINESGNHNVPAGAESHFKVVIVSAQFEG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: A0A4R8IP74_9GAMM (BolA protein family transcriptional regulator n=1 Tax=Thiohalophilus thiocyanatoxydans TaxID=381308 RepID=A0A4R8IP74_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 9.510e-13
Identity = 28/50 (56.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            MS+QA+IEEKL+ ++ P+H++VINES NH    G+ESHFKV++V+  F+G
Sbjct:    1 MSMQAVIEEKLSQQIHPAHLQVINESDNHNVPPGSESHFKVVIVADSFDG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: A0A6N8UGM7_9GAMM (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8UGM7_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 9.980e-13
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            M++Q +IE KL T L PSH+EV+NESGNH    G+ESHFKV++VS++FEG
Sbjct:    1 MTVQQVIESKLAT-LDPSHLEVVNESGNHNVPPGSESHFKVVLVSSRFEG 49
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: A0A0D8D5D6_9GAMM (Uncharacterized protein n=2 Tax=Thalassomonas TaxID=137583 RepID=A0A0D8D5D6_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 1.560e-12
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            M+++A+IEEKL T  +P H++VINES  H    G+ESHFKVI+VS KFEG
Sbjct:    1 MTIEAIIEEKLLTAFSPVHLDVINESHQHNVPPGSESHFKVIIVSEKFEG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: UPI001F57DDD6 (transcriptional regulator BolA n=1 Tax=Colwellia sp. MSW7 TaxID=2912588 RepID=UPI001F57DDD6)

HSP 1 Score: 65.1 bits (157), Expect = 2.010e-12
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            MS+ A+IEEKL +  +P H++VINES NH    G+ESHFKV +VS KFEG
Sbjct:    1 MSIAAVIEEKLNSAFSPFHLDVINESNNHNVPPGSESHFKVTIVSDKFEG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: A0A2E8K870_9GAMM (BolA family transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K870_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 4.230e-12
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            MS++ +IE KL T L+P H++V+NESGNH    G+ESHFKV++VS  FEG
Sbjct:    1 MSVKDVIESKLATVLSPRHLQVVNESGNHNVPDGSESHFKVVLVSDDFEG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: UPI001654040B (BolA family transcriptional regulator n=1 Tax=Salmonella enterica TaxID=28901 RepID=UPI001654040B)

HSP 1 Score: 62.8 bits (151), Expect = 7.060e-12
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG 150
            MS++  +E KL  +LTP+H+EV+NES  H    G+E+HFKV+VVS KFEG
Sbjct:    1 MSVRETVETKLRAQLTPAHLEVVNESHMHSVPKGSETHFKVVVVSDKFEG 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Match: N9U3W8_9GAMM (RNA polymerase sigma factor n=2 Tax=Aeromonas diversa TaxID=502790 RepID=N9U3W8_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 9.770e-12
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKF 144
            M LQALIE+KL   LTPSH+EVINES  H    GAESHFKVIVVS  F
Sbjct:    1 MQLQALIEKKLREALTPSHLEVINESHMHRTEPGAESHFKVIVVSECF 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20055.6548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU24_ECTSI5.110e-2598.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2E7XL64_9GAMM1.550e-1464.00BolA family transcriptional regulator n=1 Tax=Gamm... [more]
A0A368NFY8_9GAMM3.590e-1362.00Transcriptional regulator BolA n=3 Tax=Corallincol... [more]
A0A4R8IP74_9GAMM9.510e-1356.00BolA protein family transcriptional regulator n=1 ... [more]
A0A6N8UGM7_9GAMM9.980e-1362.00BolA/IbaG family iron-sulfur metabolism protein n=... [more]
A0A0D8D5D6_9GAMM1.560e-1260.00Uncharacterized protein n=2 Tax=Thalassomonas TaxI... [more]
UPI001F57DDD62.010e-1260.00transcriptional regulator BolA n=1 Tax=Colwellia s... [more]
A0A2E8K870_9GAMM4.230e-1258.00BolA family transcriptional regulator n=1 Tax=Gamm... [more]
UPI001654040B7.060e-1256.00BolA family transcriptional regulator n=1 Tax=Salm... [more]
N9U3W8_9GAMM9.770e-1270.83RNA polymerase sigma factor n=2 Tax=Aeromonas dive... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20055contigEcto-sp13_S_contig20055:2738..3112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score97.1
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D7FU24
Preferred namebola1
Model size150
KEGG koko:K22066
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
Cds size150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.173248-CDS-Ecto-sp13_S_contig20055:2737..27671681463009.173248-CDS-Ecto-sp13_S_contig20055:2737..2767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20055 2738..2767 -
1681463009.1836605-CDS-Ecto-sp13_S_contig20055:2992..31121681463009.1836605-CDS-Ecto-sp13_S_contig20055:2992..3112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20055 2993..3112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20055.6548.1prot_Ecto-sp13_S_contig20055.6548.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20055 2738..3112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20055.6548.1

>prot_Ecto-sp13_S_contig20055.6548.1 ID=prot_Ecto-sp13_S_contig20055.6548.1|Name=mRNA_Ecto-sp13_S_contig20055.6548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MSLQALIEEKLTTELTPSHIEVINESGNHGARLGAESHFKVIVVSTKFEG
back to top

mRNA from alignment at Ecto-sp13_S_contig20055:2738..3112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20055.6548.1 ID=mRNA_Ecto-sp13_S_contig20055.6548.1|Name=mRNA_Ecto-sp13_S_contig20055.6548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20055:2738..3112- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTACAGGCTTTGATTGAAGAGAAATTGACGACGGAGTTGACGCC
GTCACACATTGAGGTTATCAATGAGTCGGGTAATCACGGGGCTCGTTTGG
GGGCAGAGTCGCACTTCAAGGTGAGGCAACTCGAGGTAGAGCTTCAGCGA
TAACATGTTGCGCCAGCAAAACATGCTCTCTTGAGATGTCGAAATAATTG
ACGCTGGTTGTTTCACTGGCCCCTACTACTCAATGCTACATGTTGTCTTG
GCTGACCCGGTGACCTCTCGTCCTGGTGTGTCTTGCTCTTCTTATCTCGC
GTCCTGGTTTCGCTCTGTTCGTAAAAACGGGCTTCCCTAATTTAGGTCAT
CGTCGTCTCTACCAAGTTCGAAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20055:2738..3112-

>mRNA_Ecto-sp13_S_contig20055.6548.1 ID=mRNA_Ecto-sp13_S_contig20055.6548.1|Name=mRNA_Ecto-sp13_S_contig20055.6548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20055:2738..3112- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTACAGGCTTTGATTGAAGAGAAATTGACGACGGAGTTGACGCC
GTCACACATTGAGGTTATCAATGAGTCGGGTAATCACGGGGCTCGTTTGG
GGGCAGAGTCGCACTTCAAGGTCATCGTCGTCTCTACCAAGTTCGAAGGT
back to top