mRNA_Ecto-sp13_S_contig20048.6541.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20048.6541.1
Unique NamemRNA_Ecto-sp13_S_contig20048.6541.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.290e-23
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:   69 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP
Sbjct:  356 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 401
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: F0YC72_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC72_AURAN)

HSP 1 Score: 82.8 bits (203), Expect = 6.530e-17
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:   69 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            PY+  GP+AKYVTFEPD  GWNN+RMAFETV VFA+ TGRTLVMPP
Sbjct:  397 PYADYGPSAKYVTFEPDNGGWNNIRMAFETVAVFAHATGRTLVMPP 442
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: W7U3X1_9STRA (Fucosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3X1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.040e-16
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   51 LSNTTHPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            L    +P+++LGP  KYVTFEPD  GWNN+RMA E V+VFAY TGRTLVMPP
Sbjct:  166 LEKVVNPWAALGPEKKYVTFEPDRGGWNNIRMAMEVVLVFAYATGRTLVMPP 217
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A7S3H5B6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5B6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.850e-16
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   69 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            PY   GPA KYVTFEPD  GWNN+RM  E V+VFAY TGRTLV+PP
Sbjct:    2 PYLHHGPAVKYVTFEPDVGGWNNIRMQMELVLVFAYATGRTLVLPP 47
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A482S0N0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0N0_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 4.430e-14
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:   69 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            PY   GP  KYVTFEPD  GWNN+RM  E V+VFAY TGRTLV+PP
Sbjct:   91 PYIDYGPRVKYVTFEPDVGGWNNIRMQMELVLVFAYATGRTLVLPP 136
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A8J2SM68_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM68_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.490e-14
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   69 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            PY+  GP  KY+TFEPD  GWNN+RMAFET+ V A+ TGR LVMPP
Sbjct:  159 PYAGYGPKRKYLTFEPDAGGWNNIRMAFETLAVLAHATGRVLVMPP 204
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A835YSB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.300e-11
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:   81 LGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            LGP  KYVTFE D AGWNN RM  E V++FA +TGRTLVMPP
Sbjct:  165 LGPERKYVTFEADTAGWNNKRMGMEAVLIFASLTGRTLVMPP 206
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A836CC39_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC39_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.350e-11
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   78 SLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            +LGP  KYVTFE D  GWNN+RM  ETVV FA +TGRTLV+PP
Sbjct:  328 ALGPEEKYVTFEMDWGGWNNIRMGAETVVAFASMTGRTLVLPP 370
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A7S2KT07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KT07_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.130e-11
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:   57 NTTHPYSSLGPA-AKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            N   P++S   +  +Y+TFEPD  GWNN+RMA ETV+VFA  TGRTLV+PP
Sbjct:   57 NFVSPFASADTSETRYITFEPDRGGWNNIRMALETVLVFAAATGRTLVLPP 107
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BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Match: A0A7S4N1R2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1R2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.910e-11
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 3 
Query:   93 AKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 206
            AKY+TFEPD  GWNN+RMA ETV+V A+ TGRTLV+PP
Sbjct:  187 AKYLTFEPDRGGWNNIRMAMETVLVLAHATGRTLVLPP 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20048.6541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L164_9PHAE5.290e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YC72_AURAN6.530e-1778.26Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7U3X1_9STRA3.040e-1667.31Fucosyltransferase n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S3H5B6_9STRA6.850e-1671.74Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A482S0N0_9ARCH4.430e-1469.57Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SM68_9STRA4.490e-1467.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835YSB5_9STRA2.300e-1171.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CC39_9STRA2.350e-1169.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2KT07_9STRA4.130e-1158.82Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4N1R2_9STRA5.910e-1173.68Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20048contigEcto-sp13_S_contig20048:1273..2256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size206
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.6418486-UTR-Ecto-sp13_S_contig20048:1272..12981681463008.6418486-UTR-Ecto-sp13_S_contig20048:1272..1298Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20048 1273..1298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.6509693-CDS-Ecto-sp13_S_contig20048:1298..14111681463008.6509693-CDS-Ecto-sp13_S_contig20048:1298..1411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20048 1299..1411 -
1681463008.6588733-CDS-Ecto-sp13_S_contig20048:2189..22561681463008.6588733-CDS-Ecto-sp13_S_contig20048:2189..2256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20048 2190..2256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20048.6541.1prot_Ecto-sp13_S_contig20048.6541.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20048 1299..2256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20048.6541.1

>prot_Ecto-sp13_S_contig20048.6541.1 ID=prot_Ecto-sp13_S_contig20048.6541.1|Name=mRNA_Ecto-sp13_S_contig20048.6541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MGGSCLPPRGFPPPPPRCPIQHTPTRASDLRRNTLRLNQTVPAGTTCEWP
SRPWSCSRM*
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mRNA from alignment at Ecto-sp13_S_contig20048:1273..2256-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20048.6541.1 ID=mRNA_Ecto-sp13_S_contig20048.6541.1|Name=mRNA_Ecto-sp13_S_contig20048.6541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20048:1273..2256- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGTTCTTGCCTTCCCCCCCGCGGTTTCCCCCCCCCCCCCCCCCG
CTGTCCAATACAACACAGTAAGAGGAAGCGCTGCTGCCACAAGGGAAGGG
CCTTTCTTCCGTTGCCGGCATTTCTCTCCCCATGTCAACCCGCATGCTTC
GCCTTTTGTTTTGTTTTTCGCCCGAACGCTTGACCGTTTTCGCCATGTTG
CCCTCTTATGCCCATCGCAGGACGAATCGGCGCACATGGGGTACCACCCG
GTGCCCTCCACGCAGCCGGGGAAGCTTAACTGCTCAGGGGTAGTCGTGGA
GGATGGGCAGTCGCCGGTCTTCGATATTGCATACTGGAAGGTCTGTTTAT
TTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTT
GCTGCTGCTGTTGCTGCTGCTGTTGCTGCCGTTACTCTTGCTGCCGCTGC
TTGTCTCCCCGTTTTTTTTTTTTGGTGGTTGGGTGCGCGTCGGCCTGGCG
GTGAAATGGTTGTGTGCATGTGTGTGTGTTGGTTTGTTCTGTTGTGTTTT
TACACCGTGTTGTTGCTCTTGTATTTACTTGTTGTTGACCGCCATCCAAC
TCCGCGACAGCCCCCTATAAGTTGGCACAGCAAACGCAATGACCAGCTCC
TGGTTCATCCTTGTGAAACGTAGATTGCCTGGGCCGGCGAAAACCCGACA
TATCGCTCCGTCCCGGCATAGTAGGATGCAAGGTCAGTGATCTGACGACT
ACGGCATGCGCTTACATGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCGC
ACGCGAATATTTTCAGGAGGTCCCAGGCGACGAGAGTTGGGTAAGCCCCT
ACTCGAGCCTCGGACCTGCGGCGAAATACGTTACGTTTGAACCAGACTGT
GCCGGCTGGAACAACGTGCGAATGGCCTTCGAGACCGTGGTCGTGTTCGC
GTATGTAACCGGGAGGACTTTGGTGATGCCCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20048:1273..2256-

>mRNA_Ecto-sp13_S_contig20048.6541.1 ID=mRNA_Ecto-sp13_S_contig20048.6541.1|Name=mRNA_Ecto-sp13_S_contig20048.6541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20048:1273..2256- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGTTCTTGCCTTCCCCCCCGCGGTTTCCCCCCCCCCCCCCCCCG
CTGTCCAATACAACACACCCCTACTCGAGCCTCGGACCTGCGGCGAAATA
CGTTACGTTTGAACCAGACTGTGCCGGCTGGAACAACGTGCGAATGGCCT
TCGAGACCGTGGTCGTGTTCGCGTATGTAA
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