mRNA_Ecto-sp13_S_contig2004.6540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2004.6540.1
Unique NamemRNA_Ecto-sp13_S_contig2004.6540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.140e-75
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ
Sbjct:   27 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 130
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: D0P4I3_PHYIT (Eukaryotic initiation factor 4E, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P4I3_PHYIT)

HSP 1 Score: 144 bits (362), Expect = 8.970e-42
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH LQTGWS WYDKKMPKK  D   YQ++L K  +FNT+E FW++Y+H+KRPS +S +VN+YLFRD+    PMWE +P GGCWIL+I+KK+     +VLGKMWQ
Sbjct:   23 EHPLQTGWSLWYDKKMPKKI-DVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQ 120
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.570e-41
Identity = 61/104 (58.65%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH LQTGWS W+DKKMPK+T D + YQ++L K  +FNT+E FW++Y+H+KRPS ++ + N+YLFRD+    PMWE +PNGGCWIL+I+KK+     +VLGKMWQ
Sbjct:   14 EHQLQTGWSLWFDKKMPKRT-DVSTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLAKDTNLYLFRDQPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQ 111
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: W2PGT1_PHYPN (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=W2PGT1_PHYPN)

HSP 1 Score: 144 bits (362), Expect = 3.310e-41
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH LQTGWS WYDKKMPKK  D   YQ++L K  +FNT+E FW++Y+H+KRPS +S +VN+YLFRD+    PMWE +P GGCWIL+I+KK+     +VLGKMWQ
Sbjct:   25 EHPLQTGWSLWYDKKMPKKI-DVGTYQSNLQKIATFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQ 122
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: K3WZ97_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ97_GLOUD)

HSP 1 Score: 140 bits (352), Expect = 7.690e-40
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH L+TGW+ WYDKK+PKK  D   YQ++L K   FNT+E FW++Y+H+KRPS +S +VN+YLFRD+    PMWE +P GGCWIL+I+KK+     +VLGKMWQ
Sbjct:   18 EHPLETGWALWYDKKLPKKI-DVGTYQSNLQKIAQFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQ 115
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL)

HSP 1 Score: 139 bits (351), Expect = 1.290e-39
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH LQTGW  WYDKK+PKK  D   YQ++L K  +F+T+E FW++Y+H+KRPS ++ +VN+YLFRD     PMWE +PNGGCWIL+I+KK+     +VLGKMWQ
Sbjct:   21 EHPLQTGWCIWYDKKLPKKI-DVGTYQSNLQKIAAFSTVEDFWRHYIHIKRPSQLNRDVNLYLFRDRPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQ 118
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: A0A067BS98_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BS98_SAPPC)

HSP 1 Score: 138 bits (348), Expect = 3.020e-39
Identity = 59/104 (56.73%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH+LQTGW  WYD+K+PK+T D   YQ++L K  +F T+E FW++YVH+KRPS ++ + N+YLFRD     PMWE +PNGGCWIL+I+KK+     +VLGKMWQ
Sbjct:   17 EHSLQTGWCLWYDRKLPKRT-DLDTYQSNLQKIAAFGTVEDFWRHYVHVKRPSQLNKDTNLYLFRDAPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQ 114
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.970e-38
Identity = 57/104 (54.81%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH L TGWSFWYDKK+P+   D   Y+++LH+  +F+T+E FW++YVHLKRPS +  ++N+Y+FRD     PMWE +P+GGCWIL+I+KK+     +VLGKMWQ
Sbjct:   15 EHPLHTGWSFWYDKKLPRNV-DVGTYRSNLHRIATFSTVEDFWRHYVHLKRPSELHRDINLYMFRDLPKCAPMWEAFPHGGCWILKIKKKA-----NVLGKMWQ 112
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: A0A6V1NUK3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUK3_HETAK)

HSP 1 Score: 135 bits (340), Expect = 1.140e-37
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMW 309
            EHALQTGW FWYDKK+ K   D  +Y++ LH  G+F+T+EGFW+ YVHLKRP+ + +N N++LFR    +VPMWE +P GGCWIL++RK    +  SVL K+W
Sbjct:   39 EHALQTGWCFWYDKKLQKNA-DLNEYKSHLHNLGAFHTVEGFWRYYVHLKRPAALEVNTNLHLFRHGEQYVPMWEAFPKGGCWILKLRKTP--SGPSVLSKLW 138
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BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Match: H3GYW7_PHYRM (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3GYW7_PHYRM)

HSP 1 Score: 135 bits (339), Expect = 1.530e-37
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:    1 EHALQTGWSFWYDKKMPKKT------------QDQTQ---YQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQ 312
            EH LQTGWS WYDKKMPKK             +D      YQ++L K  +FNT+E FW++Y+H+KRPS +S +VN+YLFRD+    PMWE +P GGCWIL+I+KK+     +VLGKMWQ
Sbjct:   25 EHPLQTGWSLWYDKKMPKKIDVGEVGGEFAAHEDFVACRTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2004.6540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH1_ECTSI1.140e-75100.00Eukaryotic translation initiation factor 4E like2 ... [more]
D0P4I3_PHYIT8.970e-4260.58Eukaryotic initiation factor 4E, putative n=1 Tax=... [more]
A0A024TXL0_9STRA1.570e-4158.65Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
W2PGT1_PHYPN3.310e-4160.58Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
K3WZ97_GLOUD7.690e-4057.69Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A8K1CP93_PYTOL1.290e-3957.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BS98_SAPPC3.020e-3956.73Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
F0W9A8_9STRA7.970e-3854.81Eukaryotic initiation factor 4E putative n=1 Tax=A... [more]
A0A6V1NUK3_HETAK1.140e-3755.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
H3GYW7_PHYRM1.530e-3752.94Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2004contigEcto-sp13_S_contig2004:413..2314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score232.3
Seed ortholog evalue1.1e-58
Seed eggNOG ortholog2880.D7FIH1
Model size312
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1669@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 4E like2
Ec32 orthologEc-28_000250.1
Cds size312
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.585443-CDS-Ecto-sp13_S_contig2004:412..4991681463008.585443-CDS-Ecto-sp13_S_contig2004:412..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2004 413..499 -
1681463008.5992322-CDS-Ecto-sp13_S_contig2004:1226..13551681463008.5992322-CDS-Ecto-sp13_S_contig2004:1226..1355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2004 1227..1355 -
1681463008.6067846-CDS-Ecto-sp13_S_contig2004:1666..17301681463008.6067846-CDS-Ecto-sp13_S_contig2004:1666..1730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2004 1667..1730 -
1681463008.6144323-CDS-Ecto-sp13_S_contig2004:2282..23141681463008.6144323-CDS-Ecto-sp13_S_contig2004:2282..2314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2004 2283..2314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2004.6540.1prot_Ecto-sp13_S_contig2004.6540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2004 413..2314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2004.6540.1

>prot_Ecto-sp13_S_contig2004.6540.1 ID=prot_Ecto-sp13_S_contig2004.6540.1|Name=mRNA_Ecto-sp13_S_contig2004.6540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLK
RPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLG
KMWQ
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mRNA from alignment at Ecto-sp13_S_contig2004:413..2314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2004.6540.1 ID=mRNA_Ecto-sp13_S_contig2004.6540.1|Name=mRNA_Ecto-sp13_S_contig2004.6540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1902bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2004:413..2314- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCACGCGTTGCAGACAGGATGGTCTTTCTGGTGAGCCTTTCCAATAGT
ACTACGCTGGATGGATTCAAAGGCAGGACTGTTCGAGTCGGCCTTTAGAG
CCAGTCCGATGTAGATGTCGTCATTTTGGGCCATGTCGTCTTCCGTTTCC
CTCTATTTTCGAGGATTCGCCTTCCCGGCTGGCCCCTCGCCACCGATGCT
GGCGTTTGTCGTGCAAGAAAACAGGGTGATGCTGTATCATATTGGGCTCC
ACATTGCACTGCTTGTTGGCTTGCGATAATACTAAGCTTCTTGAGCTTCT
TTTGTCGGGCGTTGGTTAGTACAGGGTAACCCGCGAAAGATCTTTGCTGC
CAAATGTACACCCACACCACAATAGTAGCGGTGGGGCGTGCTCTACAGGA
GGGGCCGAAGAAGAAACGCAACAGACGGTATCTACACCATTTGCTTTGTG
GTCAAAGCCCAGTTGTGCAGTTCTGATGCTTCGAAGTACTGCAGAAACGA
AGTAACCAGTAGAGCTTGTCTTTCAAAGCGTCCCGACAGTTACATGGGTT
TTGATTTGTGCGGCGAAATCTCGATTTCCCGCAGGTACGACAAGAAGATG
CCCAAGAAGACCCAGGACCAAACACAGTACCAAGCATCGCTTCACAAGGT
TGGTCGCCGCTTATACCGCAAAAACTGCGACATGTTGGTATAATAGGACG
GACGTGTCCCGAAATCAAACCATCACGGTCGATAAGCCCGTTTCATGAGA
AAGGAATTAAACAGGGACGTTTTTAAGAGGACCGTGTGACATCCTTTTGT
TTATCGAGGTCAGTAGTAAGTGACTTCACGGTCAATACGCCTGTTGCATC
GAAAAGGAATCAAAAGGCATTTTGTTTTTTGTAGGATCGTGTGAAACCCT
GATGTGTTTCGCGCGGTACGTGCTGCACGTGGTGGGTCAATAAACGATTT
TCTCGCCAGGCGGGATCGTTTAACACGCTGGAGGGGTTCTGGAAGAACTA
TGTGCACTTAAAGCGTCCGTCCAACATCAGCATCAACGTCAACGTGTACC
TCTTCAGAGATGAGCGGGGGCACGTGCCCATGTGGGAGGTAAGCGGGCTA
AAGTAAAGCAAGGTTATTGTTGTTGCACTTGTTCGGCAGCAGTGCGTGGC
GAACTTGGTGCTTACTACGTTAGGTTACGAGCCAGCAGCAGACGCAGCTC
GAAAACGCCCCAAGCGTAAAAGTGCGCGAAGACGTGGTGCACACGCTGCC
CGGCAGAAAGAAGCCAACGCGTGGTAGGTACAGTTCGCTTGACAAAAGCC
TACAGTATCACGTCCCATGCAGGGCTTATCAGTTGTGAGCCTAGCCTTTG
GTGGTGTTTCTGGCGGTGTTTGATCATGGCCGCAAACTAAAATTTAGGTC
ACGGTGAAGCATGGCGGGAGCGGTATAGCCGACGCCGTAAAGCACGGGGA
GCACGTTCCCCTTTCAACCGACGCCTTTTGTTCGAATCACTGCTGCATCT
GATGAGCAACCTGCATCCGTTGAACTGCATACCCGTGGGAAAGTTCTGGC
CTTTGGGTGCTTTCGATAGCCTACAGCAGCAACGTGCCTTGCCGGACGCT
TGGCGCGCAGCAGCACGCGCGCACCAGCCTATGGCACCACCGCTGTGCGC
TTCTTGCCATGTGCCTCTTCTCGCTTCGACATCTCTCGTGCTTGGCTAGT
AGAGAAAGCGCCGCCCCCGCGAGATGTACCGGCGTAACCCGGCGATCCTT
TTCTCTGCTTGATGTCGTGCTGATACCCGTCGCGCGTTGACTCGTCCGTC
CAAATTTAACACCAGCGCTACCCGAACGGAGGGTGCTGGATACTGAGGAT
CCGGAAAAAGTCCGGCCAGACCAACACCAGCGTGCTGGGAAAGATGTGGC
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2004:413..2314-

>mRNA_Ecto-sp13_S_contig2004.6540.1 ID=mRNA_Ecto-sp13_S_contig2004.6540.1|Name=mRNA_Ecto-sp13_S_contig2004.6540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2004:413..2314- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCACGCGTTGCAGACAGGATGGTCTTTCTGGTACGACAAGAAGATGCC
CAAGAAGACCCAGGACCAAACACAGTACCAAGCATCGCTTCACAAGGCGG
GATCGTTTAACACGCTGGAGGGGTTCTGGAAGAACTATGTGCACTTAAAG
CGTCCGTCCAACATCAGCATCAACGTCAACGTGTACCTCTTCAGAGATGA
GCGGGGGCACGTGCCCATGTGGGAGCGCTACCCGAACGGAGGGTGCTGGA
TACTGAGGATCCGGAAAAAGTCCGGCCAGACCAACACCAGCGTGCTGGGA
AAGATGTGGCAG
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