mRNA_Ecto-sp13_S_contig20038.6538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20038.6538.1
Unique NamemRNA_Ecto-sp13_S_contig20038.6538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20038.6538.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 1.180e-149
Identity = 272/309 (88.03%), Postives = 273/309 (88.35%), Query Frame = 1 
Query:    1 HSPLIAVLCWYGLPVGLAFAPPPSVRARVGSSRNTVSAETCHLFSPDHGDHDGPIVGAPSKAAKAAAAGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFTSAGGVPGAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSLRVVGFLEIGMLPKPSSSEESALAGESLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGAGKPSREGEGSRREGGRESSATAIKREKQPDVAYLANVVVDRGQRRRGIGRTMVSSAIEI 927
            H PLIAVLCWYGLPVGLAFAPPP VRARVGS RNT SA  CHLFSPDHGDHDGPIV APSKAAKAAA GKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFTSAGGVP AAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTS RVVGFLEIGMLPKPSSSEESALAGESLTA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                        TAIKREKQPDVAYLANVVVDRGQRRRGIGRTMV+SAIEI
Sbjct:    2 HYPLIAVLCWYGLPVGLAFAPPPLVRARVGS-RNTASAVACHLFSPDHGDHDGPIVRAPSKAAKAAAQGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFTSAGGVPEAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAIKREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEI 309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20038.6538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G199_ECTSI1.180e-14988.03N-acetyltransferase domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20038contigEcto-sp13_S_contig20038:83..3192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size987
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-12_005280.1
Cds size987
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.4686005-CDS-Ecto-sp13_S_contig20038:82..6251681463008.4686005-CDS-Ecto-sp13_S_contig20038:82..625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20038 83..625 -
1681463008.4786844-CDS-Ecto-sp13_S_contig20038:1093..11571681463008.4786844-CDS-Ecto-sp13_S_contig20038:1093..1157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20038 1094..1157 -
1681463008.4880822-CDS-Ecto-sp13_S_contig20038:2812..31921681463008.4880822-CDS-Ecto-sp13_S_contig20038:2812..3192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20038 2813..3192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20038.6538.1prot_Ecto-sp13_S_contig20038.6538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20038 83..3192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20038.6538.1

>prot_Ecto-sp13_S_contig20038.6538.1 ID=prot_Ecto-sp13_S_contig20038.6538.1|Name=mRNA_Ecto-sp13_S_contig20038.6538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
HSPLIAVLCWYGLPVGLAFAPPPSVRARVGSSRNTVSAETCHLFSPDHGD
HDGPIVGAPSKAAKAAAAGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRF
TSAGGVPGAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEF
AFFGQIKGRLGRVTRNEIKHSMVIAQDTTSLRVVGFLEIGMLPKPSSSEE
SALAGESLTAARAAAALAAAAEASGAKKKSDGERSSSTPLAGTTTTEGGA
GKPSREGEGSRREGGRESSATAIKREKQPDVAYLANVVVDRGQRRRGIGR
TMVSSAIEIVRELWPAEENIYVSVEQARD
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mRNA from alignment at Ecto-sp13_S_contig20038:83..3192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20038.6538.1 ID=mRNA_Ecto-sp13_S_contig20038.6538.1|Name=mRNA_Ecto-sp13_S_contig20038.6538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20038:83..3192- (Ectocarpus species13 EcNAP12_S_4_19m)
CATAGCCCGCTGATAGCCGTGCTCTGCTGGTACGGTTTGCCTGTCGGCCT
GGCTTTCGCCCCGCCGCCGTCGGTGCGTGCTCGTGTCGGCAGCAGCAGAA
ACACCGTATCGGCGGAGACATGTCACCTTTTCAGCCCAGACCACGGGGAT
CATGACGGCCCGATAGTAGGAGCACCTTCGAAGGCAGCGAAGGCAGCCGC
GGCGGGTAAGGAGGTTTCGGGAAAACCGTCGGGTGGGTGGGGCTCTTGGG
AGAAGGTCGTCTCCCAGCGGGTCGAACAGGACGAGGTGCTGGACAGGTTT
ACCTCGGCGGGGGGCGTCCCGGGAGCTGCGAAGCTCGCTGTTCGAACAGC
GAATTCGGGGGACATGCCGAGCATCTCCAGGTGAATGAGGACTACTGTAC
TGCTGTACTGGTTACATGAGACCTTGTTGACTATGATCGAACTAAAACAT
GCGCTGAGATGGGGACATGCACTTCCGAATAACCGCGCACAGCAGTATGG
TATCGTCATGAAGTCGTAAATAGACGAAGGTGCAGTAACATGACGAGCGA
TCCCCCCCTCTCCCGCACGCCTCGTTGCGTAGTGCTTGTATGGAGCGTCG
AAATCCTTTAGAGAGGGTAGCGTTTCAGCTGTACACCCATTCATATTGCA
GCATACATTTCGGTACATGTATTGACTGGAGCAGAGCGATGATCACAAAA
TGCCAATAGTCAAGTTCATGCGCAGCATACTGCACAACAGGTACCCTTGA
CAGTTTCCTACAGCAGAGTGCCGGAAGAATCGGAGAGAAGGCACCCCGGT
GTTAGCGCTTTTTTGTAGTGTATTTCACCGCAACCAGGGGGGTGCCAGTG
CCGAAAAGGGCGGTTTCGGAAACATCTCAAGGTCAAGGTCTTTCCGGAGA
GGTATCGGTTGGTGTTCGCACCCTCCCACATGTGGAGCCATAGGCTAAAC
GACAACGCTAACACGGGGGTGCCATCTCTCCGACTCTTGTGGGCAGTAGC
CTTCGCTTTGTATTTACGGTAGCGGCTACGGTTTAAGAGACAATGTTTAA
GAGAAAGTACCGATTTCAGAGGGTCGAGCTGGCTTGTCACGACCGGAATC
GATTTAAGAGAAATATTGCTATATTTCTGGGATTTTCTCTTAAAGCGAAC
CTCTGAAAAGAGCCACGTAGCCGTCACACACACAACTTGCAGACGACACG
CCCTGAGCAGCAGGCAGAGGCTGCACAGCGGTCCCCGATCACACGCTAGG
CCCACCAAATTTCACAAACCACCGTTCGTAGAGCGAAAGAACGAACGTGC
AACGAAATATGTCATCACACGACATCATTCATTGTACATTTCCGACACAG
GTATCAGGAGTGTACCCAGTGCTTGCGGTGGGTACACTGCTCACCAAGCG
AGGACCAAGAAACATAATTAATTTTTTGACAGCGCGTGGAGCTAGCCCAA
AATGTTAAAATAACTGGCGTGATGTAACATGATGAGTTATATGCCCTCCA
AAAAATCATTTAGCTGGTTGAAACGGGAGCGTCCATATTCCATGGCCTTT
GAAATGCTACGGTTTTAGAGAGTGTTCTCCTAAAACACGTGCACGGTTCA
AGAGAATATTCTGTTAAACCGTAGCCACACGGTATTAGATAAAGCGCGAT
TCAAGAGAAAAAGAGGGGATAGTCACCATCCTCTCTTAACCGTAGCCGCT
ACTGTATGTACATCAGGAAACATGTTGGATAAAGCATACAATCGGGGAGT
TTGGGTTAGGGTTAGGGTTAGGGAAGGGTCTGTGTACCCCCTCCCTGTTC
AACTTCCTTCTGATGTTTAGTTTCCCGCGAAGGCGGTCCGTTGCCTTAAG
GATGTGTAGCCGCCTGTATGTCCAGGCCTCTCTTGATCAGCACTATTATA
CACAGTCTTCAGTCAGTATTACTGTAGGGTTGGAGGTTTATGGGTTTACT
TCTCCGCGCGCCAAGCCCTTTTGGACGGACCCATCGCACACCCCAGTATT
CTCATTCCCAACGCCTTCGTGATTTTTCGCGCCAGACTATGCATTGACAT
ATTTCGGGGACCGTTCCAGTGGTTCGAGCTTCCCATACAGCTATTCCAGG
TATGAGGCTTGCTGGTGCTTCTGTTCGGCCCGCACCAGGTACCTCCCTGC
AGTGCTTCTCCGCCGGCACAAAAGTTTCTCGTACGGCTCCACAGTAAGAG
TCACTTTCGTTAAGAGCAACCGTTCGCTCGCCTGGCCATGTACACGAAGT
TTTAGCGAGTTGTTCAGCCCCCCTTTTGGCCATGGTTGGCACACAGGAAA
GGCCGTCCCAGTGTTCGACCTGCCCCGCCGTACCGCACTATGTCCTCTCT
GATCACCATGGTGGTGCTGACATAAGCGTATGAGGAGTTGGCACCGCGGC
AGCGGTGGCCTTGCGACTTGTTTTTTTCTTTTGTTCCGCATTCCCGAAAA
GGATGACGGCGACGACGACCGCCACCTCCACCACCACCACCACGGAGGCC
GGATGATACCAACCCATTCTCTAATTTCCCCGCGCGAACCTCCTCCTCCT
CCGCTGCCAACCAACAGGAGTTCGCCTTCTTCGGGCAGATCAAGGGCCGC
CTGGGGCGCGTGACCCGGAACGAGATCAAGCACAGCATGGTGATCGCCCA
GGACACGACCAGCCTCAGGGTCGTGGGGTTCCTCGAGATCGGGATGCTCC
CCAAGCCGAGCTCATCGGAGGAGAGCGCCCTCGCCGGGGAGAGCCTGACG
GCGGCCAGGGCGGCAGCCGCGCTAGCGGCGGCGGCGGAAGCTTCGGGCGC
GAAAAAGAAGTCGGACGGCGAGCGTTCTTCGTCGACGCCGCTGGCGGGTA
CCACCACTACCGAGGGTGGAGCGGGGAAGCCGAGCCGGGAGGGGGAGGGG
AGCCGGAGAGAAGGGGGGCGTGAGAGCAGCGCCACTGCCATCAAGAGGGA
GAAGCAGCCGGACGTTGCCTACCTGGCTAACGTGGTGGTTGACAGAGGGC
AGCGGCGGAGGGGGATCGGCCGCACGATGGTCAGCTCGGCCATCGAGATC
GTGAGAGAGCTGTGGCCGGCGGAGGAGAACATTTACGTGTCCGTTGAGCA
GGCAAGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20038:83..3192-

>mRNA_Ecto-sp13_S_contig20038.6538.1 ID=mRNA_Ecto-sp13_S_contig20038.6538.1|Name=mRNA_Ecto-sp13_S_contig20038.6538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20038:83..3192- (Ectocarpus species13 EcNAP12_S_4_19m)
CATAGCCCGCTGATAGCCGTGCTCTGCTGGTACGGTTTGCCTGTCGGCCT
GGCTTTCGCCCCGCCGCCGTCGGTGCGTGCTCGTGTCGGCAGCAGCAGAA
ACACCGTATCGGCGGAGACATGTCACCTTTTCAGCCCAGACCACGGGGAT
CATGACGGCCCGATAGTAGGAGCACCTTCGAAGGCAGCGAAGGCAGCCGC
GGCGGGTAAGGAGGTTTCGGGAAAACCGTCGGGTGGGTGGGGCTCTTGGG
AGAAGGTCGTCTCCCAGCGGGTCGAACAGGACGAGGTGCTGGACAGGTTT
ACCTCGGCGGGGGGCGTCCCGGGAGCTGCGAAGCTCGCTGTTCGAACAGC
GAATTCGGGGGACATGCCGAGCATCTCCAGACTATGCATTGACATATTTC
GGGGACCGTTCCAGTGGTTCGAGCTTCCCATACAGCTATTCCAGGAGTTC
GCCTTCTTCGGGCAGATCAAGGGCCGCCTGGGGCGCGTGACCCGGAACGA
GATCAAGCACAGCATGGTGATCGCCCAGGACACGACCAGCCTCAGGGTCG
TGGGGTTCCTCGAGATCGGGATGCTCCCCAAGCCGAGCTCATCGGAGGAG
AGCGCCCTCGCCGGGGAGAGCCTGACGGCGGCCAGGGCGGCAGCCGCGCT
AGCGGCGGCGGCGGAAGCTTCGGGCGCGAAAAAGAAGTCGGACGGCGAGC
GTTCTTCGTCGACGCCGCTGGCGGGTACCACCACTACCGAGGGTGGAGCG
GGGAAGCCGAGCCGGGAGGGGGAGGGGAGCCGGAGAGAAGGGGGGCGTGA
GAGCAGCGCCACTGCCATCAAGAGGGAGAAGCAGCCGGACGTTGCCTACC
TGGCTAACGTGGTGGTTGACAGAGGGCAGCGGCGGAGGGGGATCGGCCGC
ACGATGGTCAGCTCGGCCATCGAGATCGTGAGAGAGCTGTGGCCGGCGGA
GGAGAACATTTACGTGTCCGTTGAGCAGGCAAGAGAC
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