mRNA_Ecto-sp13_S_contig20001.6524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20001.6524.1
Unique NamemRNA_Ecto-sp13_S_contig20001.6524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: D7FYJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ4_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 2.870e-68
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 1 
Query:    7 YEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLEA 345
            YEDQQKINEFGRLNTRLLEIRDDKSH+KDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTIL RQGVLKKELYARFGSSIQLEA
Sbjct:    8 YEDQQKINEFGRLNTRLLEIRDDKSHIKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILLRQGVLKKELYARFGSSIQLEA 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A6H5KTT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTT7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.160e-42
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQE 228
            V YEDQQKINEFGRLNTRLLEIR+DKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQE
Sbjct:    2 VSYEDQQKINEFGRLNTRLLEIREDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQE 77
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A7S3YAJ8_HETAK (Prefoldin subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAJ8_HETAK)

HSP 1 Score: 128 bits (321), Expect = 1.340e-35
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLEA 345
            VR EDQ +INEFG+LN RL EIR+D   +KD  D+LDDA TELMTG+GD V + +G+SF++C EE+AT+YCE++QEK Q  LD   +EE  IL+RQ  LK  LY RFG +I LEA
Sbjct:   13 VRREDQLQINEFGQLNNRLNEIREDCKALKDKFDRLDDANTELMTGDGDDVKIFMGESFIQCSEEYATEYCEKEQEKLQGMLDTFKEEETAILERQKELKVVLYGRFGDAINLEA 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A7S2V806_9STRA (Prefoldin subunit 4 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V806_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.070e-35
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLE 342
            VR+EDQQKINEFGRLNTRL E++ +    K+ LDKLDDA+TELMT +G  V L+LG+ F+EC E++AT+Y +++QEK Q  +D L +EE TIL+RQ  LK+ LYARFGSSI LE
Sbjct:   14 VRWEDQQKINEFGRLNTRLHELQVELKLHKENLDKLDDASTELMTEDGSGVKLLLGEVFIECNEDYATEYLDKEQEKTQVLVDQLSEEEHTILERQKELKEVLYARFGSSINLE 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A835Z9N6_9STRA (Prefoldin subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.700e-34
Identity = 77/131 (58.78%), Postives = 91/131 (69.47%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQ----------------EKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLEA 345
            VR+EDQQ+INEFGRLNTRL E+R D   +K  LD LDDATTELMTG+G  V L LGD+F+  EEEFAT+YCE++Q                E  Q+KLD L  EE +IL+RQ  LKK LYARFG+SI LEA
Sbjct:   12 VRWEDQQQINEFGRLNTRLNELRGDTKALKGELDNLDDATTELMTGDGGKVNLQLGDAFVVVEEEFATEYCEKKQSIAPAESXXXXXXXXXEGVQAKLDALSREEDSILKRQAELKKILYARFGASINLEA 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A6U1YJT7_TRICV (Prefoldin subunit 4 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1YJT7_TRICV)

HSP 1 Score: 120 bits (301), Expect = 1.450e-32
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLE 342
            VR  DQ+ IN FGRLN RL E+R  +  +K  L+++DDA+TELM G GDSV+L+LGD+F EC EE AT++CE + ++ Q  +D+L +EE  IL+ QG LK+ LYARFG SI LE
Sbjct:   12 VRRVDQENINTFGRLNARLYEVRASRDDLKKKLEQIDDASTELMMGSGDSVLLLLGDAFFECTEEEATEHCEAEADRLQGTVDELEEEESAILEEQGTLKRVLYARFGQSINLE 125
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: B5YND4_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YND4_THAPS)

HSP 1 Score: 120 bits (301), Expect = 1.790e-32
Identity = 64/114 (56.14%), Postives = 84/114 (73.68%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLE 342
            VR EDQ KINEFG+LN RL E+R + + +K +L+K+DDA+TELM G GD VML LG++  E  E+ AT++CE + EK Q+ LDDL  EE  I+++Q  LKK LY RFG+SI LE
Sbjct:   19 VRREDQDKINEFGQLNARLYEVRSEIARLKKLLEKIDDASTELMMGNGDKVMLRLGEAMFEATEDEATEFCEAEMEKHQAVLDDLDKEEADIVEKQAALKKVLYGRFGNSINLE 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A7S0B128_9STRA (Prefoldin subunit 4 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B128_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.700e-32
Identity = 65/114 (57.02%), Postives = 84/114 (73.68%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLE 342
            VR EDQ+ IN+FGRLN RL E+R ++  +K  L+++DDA+TELM G GD VMLMLGD+F E  EE AT++CE + EK Q+ +D+L +EE  IL+ Q  LKK LY RFG SI LE
Sbjct:   20 VRREDQENINKFGRLNARLYEVRGERDAIKKKLERIDDASTELMMGSGDKVMLMLGDAFFESSEEDATEFCEAEVEKFQAVVDNLEEEESEILEEQEKLKKILYTRFGKSINLE 133
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A1E7F096_9STRA (Prefoldin subunit 4 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F096_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.590e-32
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTELMTG-EGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLEA 345
            VR EDQ  IN+F RLN RL E+RD++  +K  L++LDDA+TELM G EGD+VML++G+SF +  EE AT+YCE + E+   +L+ L  EE TIL+RQ  LKK LY RFG SIQLEA
Sbjct:   13 VRREDQDNINKFARLNARLHELRDERKIIKQSLERLDDASTELMMGSEGDNVMLLIGESFFDTSEEDATEYCESEVERMSGELEILDGEESTILERQAELKKLLYGRFGKSIQLEA 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Match: A0A7S0SVI5_9STRA (Prefoldin subunit 4 n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVI5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.370e-31
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:    1 VRYEDQQKINEFGRLNTRLLEIRDDKSHVKDILDKLDDATTEL-MTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILQRQGVLKKELYARFGSSIQLE 342
            VRYEDQ+KINEFG+LN RLLEIR +    K  ++ LDDATTEL M G+G  VML++G++FME  EEFA +YCE++ +K QS+++ L +EE +I+ RQ  LKK LY RFG SI LE
Sbjct:   17 VRYEDQEKINEFGKLNNRLLEIRAELKQSKTDIETLDDATTELAMVGKG-KVMLLIGENFMEVTEEFAEEYCEKKTKKLQSRIEQLENEELSIVSRQDELKKILYGRFGDSINLE 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20001.6524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ4_ECTSI2.870e-6898.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTT7_9PHAE1.160e-4297.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YAJ8_HETAK1.340e-3559.13Prefoldin subunit 4 n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S2V806_9STRA4.070e-3561.40Prefoldin subunit 4 n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A835Z9N6_9STRA1.700e-3458.78Prefoldin subunit 4 n=1 Tax=Tribonema minus TaxID=... [more]
A0A6U1YJT7_TRICV1.450e-3255.26Prefoldin subunit 4 n=1 Tax=Trieres chinensis TaxI... [more]
B5YND4_THAPS1.790e-3256.14Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S0B128_9STRA3.700e-3257.02Prefoldin subunit 4 n=1 Tax=Minutocellus polymorph... [more]
A0A1E7F096_9STRA8.590e-3257.76Prefoldin subunit 4 n=1 Tax=Fragilariopsis cylindr... [more]
A0A7S0SVI5_9STRA5.370e-3158.26Prefoldin subunit 4 n=2 Tax=Chromulina nebulosa Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20001contigEcto-sp13_S_contig20001:810..2996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score136.3
Seed ortholog evalue5.5e-30
Seed eggNOG ortholog2880.D7FYJ4
Preferred namePFDN4
Model size406
KEGG koko:K09550,ko:K20177
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006950,GO:0007021,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0022607,GO:0030163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0034243,GO:0034622,GO:0035966,GO:0035967,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051087,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071218,GO:0071310,GO:0071629,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons4
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG1382@1,KOG1760@2759
Ec32 ortholog descriptionPrefoldin beta-like
Ec32 orthologEc-23_002980.1
Cds size219
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20001.6524.1prot_Ecto-sp13_S_contig20001.6524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20001 868..2483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.6329796-UTR-Ecto-sp13_S_contig20001:809..8671681463007.6329796-UTR-Ecto-sp13_S_contig20001:809..867Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20001 810..867 -
1681463007.6718795-UTR-Ecto-sp13_S_contig20001:2483..25221681463007.6718795-UTR-Ecto-sp13_S_contig20001:2483..2522Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20001 2484..2522 -
1681463007.6840754-UTR-Ecto-sp13_S_contig20001:2906..29961681463007.6840754-UTR-Ecto-sp13_S_contig20001:2906..2996Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20001 2907..2996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.6450672-CDS-Ecto-sp13_S_contig20001:867..9241681463007.6450672-CDS-Ecto-sp13_S_contig20001:867..924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20001 868..924 -
1681463007.6542768-CDS-Ecto-sp13_S_contig20001:1507..15701681463007.6542768-CDS-Ecto-sp13_S_contig20001:1507..1570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20001 1508..1570 -
1681463007.6630373-CDS-Ecto-sp13_S_contig20001:2384..24831681463007.6630373-CDS-Ecto-sp13_S_contig20001:2384..2483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20001 2385..2483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20001.6524.1

>prot_Ecto-sp13_S_contig20001.6524.1 ID=prot_Ecto-sp13_S_contig20001.6524.1|Name=mRNA_Ecto-sp13_S_contig20001.6524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTIL
QRQGVLKKELYARFGSSIQLEA*
back to top

mRNA from alignment at Ecto-sp13_S_contig20001:810..2996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20001.6524.1 ID=mRNA_Ecto-sp13_S_contig20001.6524.1|Name=mRNA_Ecto-sp13_S_contig20001.6524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20001:810..2996- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTAGGTACGAGGACCAGCAGAAGATCAACGAGTTCGGCCGCCTCAACAC
GCGTCTCTTGGAAATCAGGGATGATAAGTCGCACGTCAAGGTTCGTAGTA
GCTTGCCATTCCTCCCCCCCCCCCCCTCGTGGTAGATGGTCAAACAACTA
CGGCATGCAAACATGAATACGCCCCCCCGTACAGTAGGAGCCAATATGCT
ATGCTGTGTGTAGATACGAAAACCCGAGCGTCATGCCGTCTCTTTCGCTT
TGTTGCCATCAGCAGCACTACATGCAGATAAACCAACAGCAGTTGTAGAC
TAATGTAGCGGTAGAGCACTGCTTTTTAAGTGCAACCCTCGTATTGTGGT
GTATTAGATAAAGCAGCGTCAAGTTGCGCACTGCGCCGTCGGCGTTGTCA
TACCGCTACACAACCTTCTGACTATTCCGTTTCCTTTGCCTACGTTACAC
GGCAAATAACAAAAAAAACGACAGGACATTTTGGACAAGCTGGACGATGC
GACAACCGAGCTCATGACCGGCGAAGGCGACTCGGTAATGCTCATGCTGG
GCGACAGTTTCATGGAGTGCGAAGAGGAGTTCGCCACGGACTACTGCGAG
CGGCAACAGGAGGTGGGTCGTTCGTTGTGCTTGCGTCAACCGTTGGTGGG
AGGAAGAGAGGGTGTGCTTGGTTGATTGTTTTCGGGTTTTCGTGCAGCAT
CAAACGCTACTCGGAAAATCAACGAAATACTCGGTTGTCTCAGCGGCGTA
ACAACGATTGAGTGCTTTTTCGCGCGCGTGTGAGTGTGTTCTTTTGGCAT
CGGCCGTGCTACAGCTCCCCTGACTAATGAAACACCCGTGTCTCGGGAAG
AAACGCCTAGACCTGTTTTGTGTTTCTTTCGGTAGCGTGGACCGCACTAT
CCGGCTATCCGGTTGATCAATGAGAAGGCATCAGCGGCTAAGTATGGTGG
TCTCCGTAACGGCGGCAACGTTCTGTGTATGGGCGCCTGCCTGCTTCGCG
TCTGTGTTTTCTTTTAACTTACCCTACGGCTCTCGTTGGCCACCAAGACG
AAGTAGCCACCCGTACCGCCATTGGTAGCTGAAGATATGGAGAGAGGGAG
AGGAATACCTAGGCCTACATGATTGGCCAGCACACCCCCCCTGAAGCAGA
AGGAGGAGGGCACTAGCGTTTTTTGGACCACATCACCCTCTCCCGCAGTG
GGAGAGTCGTTTGCATGTATCCATGACGCCCTTGCCGGAGAGACCACCAA
GCCCGTTGACACCGGTGTGTGCGAATGGAGGCGGAGGGTTCACGCCAGCA
GTAGTGTGTGGTGTGTTCGCCAACTCGCGTTGTTTCGAAATGTGTACGGC
GTGCTATGTTTACGGCGTGCTTCTCTTTTGCCCTTGCCGTCACCGCGCTC
CCTGCTTCGTGCGTCTGGCACCCAAGAAACGGCAATCGAAGTTGGACGAT
CTCGTCGACGAGGAGAAAACAATTCTGCAACGACAAGGGGTGAGTTACAA
CAGCTGAGCGGTTACACGGCTATTTCTGTCCGCGGCGGCTTTTCTGCTCC
TTCCGAGCGACATTAGTGGGACTTGTGGACGAATAGGGGCGTCGTTCTTT
GCGCCTGGTGTGATCACACCGAGTGGATGCATGCAGGAGGTTTTGCTAGC
ATGGTCGTTTCAGTCTTTCCTTACGACATATCTTATTCTGGCCCGATGGC
GTTCTTGGTAGCGGCGGTGGCAGGGTGGTCTCTGCATCATTGTCCTTTCG
AGGGAAAGGAAACGTCGACCAACGAAAAATCGGCGCTGGTTAATGTGTTT
TTTGTTTCTTTTGGGCTAAGAGCCGATAGCGCGGCGCACGCGGCTGTGTC
GAGACAGCACAACCCCCACCCCTTGATGATAGGAGGCGATGGTCTTCCCT
GGAAACACGCCACAGGGTAAGCCCGCCCGCGGTGCTCACCTCAACAGCGG
TGATTGGATCATCCCCTTGGATCGTTCTACGTCGTCTTTATCCAGAGATC
GTCCTAAATACTTCAAGCCATCTATCTGGGACACCGATTGAATTCATCTG
CCGCACCCTCCTCCCCGCCCAGGTCCTCAAGAAGGAATTGTACGCGCGGT
TTGGGTCATCCATCCAGCTGGAAGCATAACAACGCAACCGGAGAAGTACA
TGGTGTTGTTCGTGTTGGGGTCTGCTAATATAATATT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20001:810..2996-

>mRNA_Ecto-sp13_S_contig20001.6524.1 ID=mRNA_Ecto-sp13_S_contig20001.6524.1|Name=mRNA_Ecto-sp13_S_contig20001.6524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20001:810..2996- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGGCGAAGGCGACTCGGTAATGCTCATGCTGGGCGACAGTTTCAT
GGAGTGCGAAGAGGAGTTCGCCACGGACTACTGCGAGCGGCAACAGGAGA
AACGGCAATCGAAGTTGGACGATCTCGTCGACGAGGAGAAAACAATTCTG
CAACGACAAGGGGTCCTCAAGAAGGAATTGTACGCGCGGTTTGGGTCATC
CATCCAGCTGGAAGCATAA
back to top