mRNA_Ecto-sp13_S_contig200.6520.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig200.6520.1
Unique NamemRNA_Ecto-sp13_S_contig200.6520.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: A0A6H5KMV4_9PHAE (Lactoylglutathione lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV4_9PHAE)

HSP 1 Score: 434 bits (1117), Expect = 2.280e-153
Identity = 207/214 (96.73%), Postives = 209/214 (97.66%), Query Frame = 1 
Query:    1 MAMRRLVKTTALPAATLIIGATAFRPMHTAFPRCSGLGSNTTPPPRVQMAKMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGE 642
            MAMRRLVKTTALPAATLI GATAFRPMHTAFPRCSGLGSNTTP P V+MAKMA +AGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPH SLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGE
Sbjct:    1 MAMRRLVKTTALPAATLIFGATAFRPMHTAFPRCSGLGSNTTPLPTVKMAKMAQMAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHLSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGE 214
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: D8LK52_ECTSI (Lactoylglutathione lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK52_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 3.500e-140
Identity = 188/198 (94.95%), Postives = 191/198 (96.46%), Query Frame = 1 
Query:  145 MAKMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQMSKDFSKYTPGGESTS 738
            MAK+A +AGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIP+DPKERTRWCFQQAGAVELTHNWGTENDA LKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIF     PDGYSIEILGADQMSKDFSKYTPGGESTS
Sbjct:    1 MAKIAQMAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPSDPKERTRWCFQQAGAVELTHNWGTENDAALKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFD----PDGYSIEILGADQMSKDFSKYTPGGESTS 194
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: A0A7L0FFD8_CORCN (Lactoylglutathione lyase (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L0FFD8_CORCN)

HSP 1 Score: 234 bits (597), Expect = 7.460e-75
Identity = 111/183 (60.66%), Postives = 130/183 (71.04%), Query Frame = 1 
Query:  145 MAKMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQM 693
            MA  A + G  D      C+ PD STKDF+ QQTMLR+K+P  SLDFYTRVLGM L+Q+  F   +FS+YF+GY D ++IP D KERT W F +   +ELTHNWGTEND +  YHSGN DPRGFGHIGI VPDVYKAC+RFE+ GVKF K PD G MKGLAF+      PDGY IEIL  + M
Sbjct:    6 MAAPAEVRGLSDEAAYGACSEPDASTKDFLFQQTMLRVKDPKKSLDFYTRVLGMTLLQKFDFPTMKFSLYFLGYEDKNDIPKDDKERTAWTFSRKATLELTHNWGTENDENQSYHSGNSDPRGFGHIGIAVPDVYKACKRFEELGVKFVKKPDDGKMKGLAFV----QDPDGYWIEILNPNHM 184
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: H2ZYK6_LATCH (Lactoylglutathione lyase n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZYK6_LATCH)

HSP 1 Score: 234 bits (596), Expect = 9.900e-75
Identity = 109/182 (59.89%), Postives = 133/182 (73.08%), Query Frame = 1 
Query:  148 AKMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQM 693
            A+   ++G  D +   +C  PDPSTKDF+MQQTMLR+K+P  SL+FYT+VLGM  +Q+  F   +FS+YF+GY D +EIPAD KERT W F +  A+ELTHNWGTEN+A   YH+GN DPRGFGHIGI VPDVY AC+RFE+ GV+F K PD G MKGLAFI      PDGY IEIL  + M
Sbjct:    4 AQPTELSGLTDEVAYGVCCDPDPSTKDFMMQQTMLRVKDPKKSLEFYTKVLGMTFLQKFDFPSMKFSLYFLGYEDKTEIPADMKERTAWTFSRMAAIELTHNWGTENEAGQAYHNGNSDPRGFGHIGIAVPDVYAACKRFEELGVQFVKKPDDGKMKGLAFI----QDPDGYWIEILSPNNM 181
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: UPI001CF93549 (lactoylglutathione lyase n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF93549)

HSP 1 Score: 233 bits (594), Expect = 1.930e-74
Identity = 111/182 (60.99%), Postives = 129/182 (70.88%), Query Frame = 1 
Query:  148 AKMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQM 693
            +K   ++G  D    + C  PDPSTKDF+MQQTMLRIK+P  SLDFYTR+LGM L+Q+  F   +FS+YF+ Y D  EIPAD KER  W F +   +ELTHNWGTEND +  YHSGN DPRGFGHIGI VPDVY AC+RFE+ GVKF K PD G MKGLAFI      PDGY IEIL  + M
Sbjct:    3 SKPKELSGLTDEAAYSACTDPDPSTKDFMMQQTMLRIKDPKKSLDFYTRILGMTLLQKFDFPAMKFSLYFLAYEDKKEIPADCKERAAWTFSRKATIELTHNWGTENDENQSYHSGNSDPRGFGHIGIAVPDVYAACKRFEELGVKFVKKPDDGKMKGLAFI----QDPDGYWIEILSPNNM 180
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: UPI001E1D4D5D (lactoylglutathione lyase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4D5D)

HSP 1 Score: 232 bits (592), Expect = 4.730e-74
Identity = 109/170 (64.12%), Postives = 126/170 (74.12%), Query Frame = 1 
Query:  199 CNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQMSKDFS 708
            C+ PD STKDFIMQQTM RIK+P  SL+FYT VLGMRL+Q   F   +FS+YF+GY    +IP D KER RW F +   +ELTHNWGTE +    YH+GN DPRGFGHIG+ VPDVYKACERFEK  VKF KTPDGG MKGLAFI      PDGY IEIL A+QM++D +
Sbjct:   15 CHEPDESTKDFIMQQTMYRIKDPKRSLEFYTNVLGMRLLQRFDFPAMKFSLYFMGYEKAEDIPEDNKERVRWTFSRPATIELTHNWGTEKEEGEPYHNGNSDPRGFGHIGLNVPDVYKACERFEKMDVKFIKTPDGGKMKGLAFI----QDPDGYWIEILSANQMAQDMT 180
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: A0A8K0KI60_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KI60_LADFU)

HSP 1 Score: 230 bits (586), Expect = 2.670e-73
Identity = 108/182 (59.34%), Postives = 132/182 (72.53%), Query Frame = 1 
Query:  154 MAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQMSK 699
            M    G  +    A C+ PDPSTKDF+ QQTM RIK+P  SLDFYTRVLGM L+Q+L F   +FSIYF+G+ + ++IPADPKE+  W   +   +ELTHNWGTE+D D KYH+GN DPRG+GHIGI VPDVY+ACERFEK GV+F K PD G MKG+AFI      PDGY IEI  A ++S+
Sbjct:    1 MGEQVGLTNAEAKACCSDPDPSTKDFLFQQTMYRIKDPRKSLDFYTRVLGMTLIQKLDFPSMKFSIYFMGFENKADIPADPKEQVVWALSRKATLELTHNWGTESDPDAKYHNGNSDPRGYGHIGIMVPDVYQACERFEKLGVEFVKKPDDGKMKGIAFI----KDPDGYWIEIFNASKISE 178
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: A0A1Y1I722_KLENI (Lactoylglutathione lyase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I722_KLENI)

HSP 1 Score: 233 bits (593), Expect = 3.690e-73
Identity = 109/169 (64.50%), Postives = 133/169 (78.70%), Query Frame = 1 
Query:  196 ICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLK-YHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQMSK 699
            + +T DP T+++IMQQTM RIK+P  SLDFYTRVLGMRL++   F   +FS+YFVGY DP EIP DP +R  W F+Q G VELTHNWGTE+D + K YH+GN DP+G+GHIG++VPDVYKACERFEK GV+F KTPDGG+MKGLAFI      PDGY IEIL A+ ++K
Sbjct:   99 VADTVDPETQEYIMQQTMYRIKDPKVSLDFYTRVLGMRLLKRFDFPSAKFSLYFVGYADPKEIPDDPVQRGIWTFRQRGTVELTHNWGTESDPNFKGYHNGNTDPKGYGHIGLSVPDVYKACERFEKLGVEFVKTPDGGSMKGLAFI----KDPDGYWIEILNAENITK 263
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BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: A0A7K6ZNC4_9AVES (Lactoylglutathione lyase (Fragment) n=12 Tax=Aves TaxID=8782 RepID=A0A7K6ZNC4_9AVES)

HSP 1 Score: 228 bits (582), Expect = 1.190e-72
Identity = 109/183 (59.56%), Postives = 128/183 (69.95%), Query Frame = 1 
Query:  145 MAKMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQM 693
            MA  A + G  D      C+ PDPSTKDFI+QQTMLR+K+P  SLDFYTRVLGM L+Q+  F   +FS+YF+ + D ++IP D  ERT W F +   +ELTHNWGTEND    YH+GN DPRGFGHIGI VPDV KAC+RFE+ GVKF K PD G MKGLAFI      PDGY IEIL  + M
Sbjct:    1 MAAPAELQGLSDDAARGACSEPDPSTKDFILQQTMLRVKDPKKSLDFYTRVLGMTLLQKFDFPSMKFSLYFLAFEDKNDIPKDKTERTSWTFSRKATLELTHNWGTENDEKQSYHNGNSDPRGFGHIGIAVPDVNKACKRFEELGVKFVKKPDDGKMKGLAFI----QDPDGYWIEILNPNHM 179
[Close]
BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Match: A0A7K9YYV6_9GALL (Lactoylglutathione lyase (Fragment) n=2 Tax=Galliformes TaxID=8976 RepID=A0A7K9YYV6_9GALL)

HSP 1 Score: 228 bits (582), Expect = 1.280e-72
Identity = 109/181 (60.22%), Postives = 127/181 (70.17%), Query Frame = 1 
Query:  151 KMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVLGMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTHNWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTPDGGNMKGLAFIFGEWHYPDGYSIEILGADQM 693
            KMA  +G  D      C+ PDPSTKDF+ QQTMLR+K+P  SLDFYTRVLGM L+Q+  F   +FS+YF+GY D ++IP D  ERT W F +   +ELTHNWGTEND    YH+GN DPRGFGHIGI VPDV KAC+RFE+ GVKF K PD G MKGLAF+      PDGY IEIL    M
Sbjct:    5 KMAEPSGLSDEAAYGACSEPDPSTKDFMFQQTMLRVKDPKKSLDFYTRVLGMTLLQKFDFPPMKFSLYFLGYEDKNDIPKDKAERTSWTFSRKATLELTHNWGTENDEKQSYHNGNSDPRGFGHIGIAVPDVNKACKRFEELGVKFVKKPDDGKMKGLAFV----QDPDGYWIEILNPKHM 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig200.6520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMV4_9PHAE2.280e-15396.73Lactoylglutathione lyase n=1 Tax=Ectocarpus sp. CC... [more]
D8LK52_ECTSI3.500e-14094.95Lactoylglutathione lyase n=1 Tax=Ectocarpus silicu... [more]
A0A7L0FFD8_CORCN7.460e-7560.66Lactoylglutathione lyase (Fragment) n=3 Tax=Neogna... [more]
H2ZYK6_LATCH9.900e-7559.89Lactoylglutathione lyase n=1 Tax=Latimeria chalumn... [more]
UPI001CF935491.930e-7460.99lactoylglutathione lyase n=1 Tax=Protopterus annec... [more]
UPI001E1D4D5D4.730e-7464.12lactoylglutathione lyase-like n=1 Tax=Mercenaria m... [more]
A0A8K0KI60_LADFU2.670e-7359.34Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A1Y1I722_KLENI3.690e-7364.50Lactoylglutathione lyase n=1 Tax=Klebsormidium nit... [more]
A0A7K6ZNC4_9AVES1.190e-7259.56Lactoylglutathione lyase (Fragment) n=12 Tax=Aves ... [more]
A0A7K9YYV6_9GALL1.280e-7260.22Lactoylglutathione lyase (Fragment) n=2 Tax=Gallif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig200contigEcto-sp13_S_contig200:22311..27727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score402.1
Seed ortholog evalue1.8e-109
Seed eggNOG ortholog2880.D8LK52
Preferred nameGLO1
Model size744
KEGG rclassRC00004,RC00740
KEGG koko:K01759,ko:K16803,ko:K21768
KEGG ReactionR02530
KEGG Pathwayko00620,map00620
Hectar predicted targeting categorychloroplast
GOsGO:0001101,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004462,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006081,GO:0006082,GO:0006089,GO:0006090,GO:0006355,GO:0006357,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009414,GO:0009415,GO:0009438,GO:0009628,GO:0009636,GO:0009651,GO:0009889,GO:0009987,GO:0010035,GO:0010468,GO:0010556,GO:0010941,GO:0016020,GO:0016829,GO:0016846,GO:0019219,GO:0019222,GO:0019243,GO:0019752,GO:0019904,GO:0030097,GO:0030099,GO:0030154,GO:0030316,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0034641,GO:0042180,GO:0042182,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0046872,GO:0046914,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051186,GO:0051252,GO:0051596,GO:0051716,GO:0060255,GO:0060548,GO:0061727,GO:0065007,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0080090,GO:0097237,GO:0098754,GO:0104004,GO:1901564,GO:1901575,GO:1901615,GO:1901700,GO:1903506,GO:1990748,GO:2000112,GO:2001141
Exons7
EggNOG free text desc.lactoylglutathione lyase activity
EggNOG OGsCOG0346@1,KOG2944@2759
EC4.4.1.5
Cds size744
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig200.6520.1prot_Ecto-sp13_S_contig200.6520.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig200 22311..27727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.2715993-CDS-Ecto-sp13_S_contig200:22310..223411681463007.2715993-CDS-Ecto-sp13_S_contig200:22310..22341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 22311..22341 +
1681463007.2836716-CDS-Ecto-sp13_S_contig200:22485..226341681463007.2836716-CDS-Ecto-sp13_S_contig200:22485..22634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 22486..22634 +
1681463007.2929494-CDS-Ecto-sp13_S_contig200:24850..249241681463007.2929494-CDS-Ecto-sp13_S_contig200:24850..24924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 24851..24924 +
1681463007.3024597-CDS-Ecto-sp13_S_contig200:26361..264151681463007.3024597-CDS-Ecto-sp13_S_contig200:26361..26415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 26362..26415 +
1681463007.3118181-CDS-Ecto-sp13_S_contig200:26753..268711681463007.3118181-CDS-Ecto-sp13_S_contig200:26753..26871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 26754..26871 +
1681463007.3214748-CDS-Ecto-sp13_S_contig200:27201..274241681463007.3214748-CDS-Ecto-sp13_S_contig200:27201..27424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 27202..27424 +
1681463007.331669-CDS-Ecto-sp13_S_contig200:27632..277271681463007.331669-CDS-Ecto-sp13_S_contig200:27632..27727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 27633..27727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig200.6520.1

>prot_Ecto-sp13_S_contig200.6520.1 ID=prot_Ecto-sp13_S_contig200.6520.1|Name=mRNA_Ecto-sp13_S_contig200.6520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
MAMRRLVKTTALPAATLIIGATAFRPMHTAFPRCSGLGSNTTPPPRVQMA
KMAHIAGRPDGIDDAICNTPDPSTKDFIMQQTMLRIKNPHSSLDFYTRVL
GMRLMQELHFAEWEFSIYFVGYCDPSEIPADPKERTRWCFQQAGAVELTH
NWGTENDADLKYHSGNEDPRGFGHIGITVPDVYKACERFEKEGVKFRKTP
DGGNMKGLAFIFGEWHYPDGYSIEILGADQMSKDFSKYTPGGESTSK*
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mRNA from alignment at Ecto-sp13_S_contig200:22311..27727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig200.6520.1 ID=mRNA_Ecto-sp13_S_contig200.6520.1|Name=mRNA_Ecto-sp13_S_contig200.6520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig200:22311..27727+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATGCGAAGGCTCGTGAAAACCACAGGTAGGTGCGCGTAGTGTGC
TTTTAAGATATCGCCACAGGTACCATCCTGCGTGCTACACGTACTGTCTT
CAAAGATCAGTTGTCAACCAACGCACACATCGCCCACATTGAACTGCTTC
AATTCTGTTCATGCTTCGCTGACAGCTCTTCCAGCTGCGACATTGATCAT
CGGGGCAACCGCATTTCGGCCAATGCATACAGCATTTCCTCGCTGTTCAG
GGCTCGGTTCCAACACTACGCCGCCACCAAGGGTGCAGATGGCGAAGATG
GCGCACATAGCCGGGCGACCGGACGTGAGTTGCAGCATGCATGCATATAT
CGGTTTGTCTCGCGTACGCATGGAGACTAGATAGACTATTCCTGAATAGA
ATTGGAGCAGTCACGACCCACCCTGGGCTGCTCTCTACCTTGTGGATACT
TGAGCGCGCGGCACCGTCTTGTGGTTCCTACAGTAGAATACTTCTGCAAG
TACCGTGGATCATCGCGATATGTCTACAGTAGTAGTAAGGACAAGGCCAG
GGCTAGATCTACGAAATCTACGACTCTTGAGTCTCTCCCCCCCGTCTTAC
TCTCTTTCTCTTTCTTTCTCTTTCTCTCTCTCTGTCTCTCTGTGTGTGTT
TGTTTTATTATTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGAC
GTCAGTCTTAGTGCGGTTGAAAACACAAAACACTTCTATCTCTGTCTGTT
TTTTTTATTAGCATCGACCGCGCTAACCGTCTGACCAATGAAAAGACTTC
AGTCTTAGTGCGGTTGAAAACACGAAACACTTTTATCTACCATGGACTGG
GACCCAGCATGGGGGAGGCTAAATTATCCTTCGGATTTAAATCAGAAACA
GCAGCAACAGATGAAAACTGCACGCGTCTACCAAGGCTATTACCTAGTAC
TCGAGTTCGTTTTGGAGTACTTTCACCAGTGTCCTCCCTGTTTTCGCTAC
CATCATTCTGATCCTCATGTTGACAAGAGGAATCTCTGGGCAGTTTTTCC
CTAGCCATACGTTTCTTGTTGTGGGGAAGGTTATCTGGCTCAAAACCCTT
TGCTCTCTTCCACTCCTCCATGTTTTCCTGCTCCATCGTCGTCTTCGTCC
TCCTTCCTTCCCTTTCCCTTTCCTTCGTCTTCGTTACTCCCAAAAGAATT
ACCCTCACTACTATCGTTGTCGCAGAGATCCCAACCGATTGGCCCTGGTG
GAAGTTGGTCGATCAGTAGCCCATGATGTTTGAACACATCGCGAGTTCGC
ATCGACAGAAAACGAGCTAGATCGAAGGTAAACCGTCTCCAAATCCTGTT
TGTATGAAAAGCTTTCAGGCGAACTAAGGCCCTCTCGTCGTCAAAATTCC
CCCGGCAAAGAGCTTCGTGCGCCACGTGGTTGGCGATACACTAGCAACGA
TGAGTCGATTGGTGCCTTTGCCAAGACCACCATTCTATCTCTGTGTGTGT
GTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTGCTTCTTGTGTTGTCGAAAATGATGCATGTTGTATGTATGCAATGCC
GTTGGCAAATTTTGTAACTTTGTGAACAGTATGTAGAACACACCAATATG
CCATCGGCGAAGCGTCGATGACCGGGTGGGAGCTTGCTCTCTCCTTCCTG
ATCGTGCTTACCCACCCCATGACCCTTCTACTGTGTTCCATAAACGTCTA
CGTCAATGGTGTAGGATATAACGTGTCCGGTTCATGTATGCACACGCTGC
GATGCCACCACTAAAACAGTTGCTGCGCGGACCCTACAAGGATACTCTCG
AATTTATATTGGAGCAGTGTGAGATCCTCGTTGAGCCTGGGGCAGCTTCT
CGAAAGAGGTCTTGATGCTCGATTGAGATCGAGATCGAGCCTTCCAAAGA
TCTGCTTTGATGTTGCACAGTTTGGCGCAGTTTCACCCTCGAAAGACGCA
CATTAAGGCGCGTCAGCATAACTAAAGACTACAAACCCAAAATGCACAGC
CCACAAAACTTGGCCTACCAGGTACTATCTAGTGTGCTGAAGTCGGATGC
AGCACACAATCATGGGCAAATGAGCAGACATGCAGGTTCGACTGCTGCAG
GCTTCCCGTGCAACCCCCTCCCCACCAGCGGGGGGAAGAGTGGCTGGTTC
TGAGAGCCTGATCGGCTCGCCCGCCAATGCCCAGTACTTGTTTTGCCCTG
AGTAGCAAACGTCGACTCGAAACGAGCTGGCGTCCCGAAGATCTTGTTCG
TTGCTGCAAGCACACACCAAAGAACATCGTGCGGCAAACCAAATGGCGCA
AAAGGCATTGCCGCAAGAGCACAAAACAAAAAAGGGCTTGATGCGGTGAG
CCGCCTGTTTCTATCGTTGTCTCGGGACTCCATTGATTTCCACCTCTGAC
TCTACTTTGGAGACGCTTGAATGTCCAAGAATGAGCAATAAGCACTGGAG
GGTAGCTAACACCCAAACCGACGCTGAACCCATCCTCCAGGGTATTGATG
ATGCCATCTGCAACACACCGGACCCTTCTACGAAGGACTTCATCATGCAA
CAAACAATGTTGAGGTAGGTGCCTGCAGTCATGTTAATGCTGGGTATACA
TGAGCCAGGTTGCACGACAGTGGCTGAGGGGTTCGGTTGGCAACCTGGTA
AGCTGTGGGTACAAAAATCGCTGGAGTAAGAAAATCCTCAATTTAGATTG
TTTGAACGCCTAGTCGTGAGTACACACAACCAAGAGAAGACTGCTAAACA
CCACCACTCGAACTAAGAGTTGAAGGTTCGCACCAGGGGGGGGTGGAGAA
TTCCTCCTGCGTGGCCACGGCTCCAGTGCGCAAGACGCACATACGACGAA
AGGTGTACACTGGCGCCCAGAGAGATGGGACGAATGAAAAACAACAGAGA
AAAACCAAGTAGGGCCTGGTCAAGGCCGTCCTTGGCACTAGAAAAACGAA
GTGTTCTCCACATCAAACGACACGAGACATGCTCGCGTGGCGTGAACAGT
CGGCGCGCGGATTTTGTTGCCGAGACTTTTGCCGAACTACCTGCGCGGAA
GTTGCCGAGGCCTTTGCACACACGCCTGCAGCGTTGGCTTTTGCCTGTGT
GTCAATTTCTGCATCTGGCCTGCAATCCGATTTAATTCCATCCTCTAGCC
GCGGCTCCGTTCTAGCTCTTGTGCTTGAGAGTTGCTTTTGAGACTTGCTT
GCTTGAGTGTGTCGCGGCGTGCTGCGGCAGCAACGACACGCGCCCGATTT
GCAAATGAACGTGCTTGTCTGGCTTAAACTATCTCGCGGTGACTCCGCTT
GATGTGTGTTGACTTCAGGTTATTGCAGAAATTTGGCCACAAGCTAGCGG
AACGTTCAGGCCGTGTGTCTTTCTTGTGATCGTGTCTGTTGACTGCGGCA
TGTTCCTCTCTAACATCGTACAGACAGCATAGTGTTTAGTTAGGAGCAGC
GGATCTGAGCAACTTCTTTTGCACAAATATCGGCGCCGGAGCTGCATGTA
GTCCAGCAGCAAGCAGTATCGATAGAGCGGTTGTTCCAGTACACAGGGCA
GGAGTATTCGACTCTGTTGTGGGGTCGTCCTGTTGGGTATCGCAAACGTA
AGGAAGGTCACCGGCAGTCCTCAGTGCGTCAGCACAGCGGTCGTGCAGAG
AGGAGGTGCTGTGGACGGAGGCTCAATTGACAGAGGGAGACAAACATACA
GACCAGCGTGCTGATGATGCTAGGAAAATTGCTTCAGTACAGCAGTGTGG
TCAGTCGGAGACATCGGCACAGTTCTTGCATCAATGTTGGCACAGACGTG
ATACATTTTGTGCTTGTTCACTGAACAGGCCGGAATGGAATACCGCTGAA
TGCTCAGCGCGTTGCATATTGGTTACCCTTAATTGGTGGACGTGGAATGT
TGTTCCCAGGAAGGTGCTGTACCATTGTGACAAAGTTTTCCGAAAAAAAA
TATGCACGTATTGACCCTCCTGTTCTCCCCTGATGTTACGCGCAATCGCA
GGATCAAGAACCCCCATTCGAGTCTCGACTTCTACACGAGGGTTCTAGGA
ATGAGGTAACTTTTCGGTAAACCATCGTCGCGTCGTGCGCATGGCCCTGT
GAAGTGGTGCATGGTAGACGTTGGAAGTGCGGACACGGAGTTTCACATGG
TTGAGCTTTTTACTTTGTTGGGACCAGACCGCGTCTCGCGTCAAGTTTCA
TGCTCTGGAGATGGTCAGACAGTGTTGCTTCATTAGATGCTAGGTGGAAG
ATATTTTTGCAGCCTCGAGGGGTAGGAACCTCCAGGGAGTCGCGCAGTCG
ACGGCAGTCTCTTGCTCCTGATCGAAGGTTGACGAGAACTCCATTTTTAG
ATCTGGCCTTCTCTCTGCACTTGCTCGCGTACGCTGTGCGTAGGCTGATG
CAAGAGTTGCATTTCGCGGAATGGGAGTTCAGCATCTACTTCGTCGGGTA
CTGTGACCCGTCGGAAATTCCCGCGGACCCAAAGGAGCGCACAAGGTGGT
GTTTCCAGCAGGTGCGTTCTACCTCTCCGGATATCAGTACGAAGACTGTC
CCGTCAATGCAGCTGATCTCCACGATTGAAGAGAGATTCCACCACGAGGA
TCTTCGGGTTGAGAGAAAACAGTAACGAAAGCCTGCAAACGTCATGAGAA
TTCATAAAATTGCATAGTTGAAGTGAAAGTGGATTTTAGAGGTTTTCTCT
TGTCCCGACCCTTCTTATTTCGTAGCCGCTACTACTTCCGTGCAACTCCT
GAAATGTGCCCGTTTTCGCTGGAACATCTCCACAACGCTTGCTAGCTTCT
GCGTGATTTCTGACCACCGGCACCCGATCTCTTTCTTCCAGGCCGGTGCC
GTGGAGCTCACGCACAATTGGGGGACGGAGAATGACGCCGACCTCAAGTA
CCATTCTGGCAACGAGGATCCTCGAGGATTCGGACACATCGGTATTACCG
TGCCTGACGTGTACAAGGCATGCGAAAGATTCGAAAAGGAGGGAGTGAAG
TTCCGCAAGACACCTGATGGGGGCAACATGAAGGGCCTGGCGTTCATTTT
CGGCGAGTGGCATTGTTAGACACAACATTTGGTGCTGCAGAAACTCCAAC
CCAAAAACAAGCGTGAAGGCATGTGGTGGCAGATATGCCATCCTAAAACT
CCAAAGCTCTTCATAGATCGCAGTTCAAAATCCGCCTTGCCAGCTTGTGA
TGTCCAATGATGTGCTCCCCACTGTCCCACCCTCTTCCGTTTCCCACTCT
TTGCTAAACTCGTTCAACGCAGATCCCGACGGATACTCCATCGAAATTCT
TGGGGCGGATCAAATGAGTAAGGACTTTTCGAAGTACACGCCCGGGGGGG
AATCCACCAGCAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig200:22311..27727+

>mRNA_Ecto-sp13_S_contig200.6520.1 ID=mRNA_Ecto-sp13_S_contig200.6520.1|Name=mRNA_Ecto-sp13_S_contig200.6520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig200:22311..27727+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATGCGAAGGCTCGTGAAAACCACAGCTCTTCCAGCTGCGACATT
GATCATCGGGGCAACCGCATTTCGGCCAATGCATACAGCATTTCCTCGCT
GTTCAGGGCTCGGTTCCAACACTACGCCGCCACCAAGGGTGCAGATGGCG
AAGATGGCGCACATAGCCGGGCGACCGGACGGTATTGATGATGCCATCTG
CAACACACCGGACCCTTCTACGAAGGACTTCATCATGCAACAAACAATGT
TGAGGATCAAGAACCCCCATTCGAGTCTCGACTTCTACACGAGGGTTCTA
GGAATGAGGCTGATGCAAGAGTTGCATTTCGCGGAATGGGAGTTCAGCAT
CTACTTCGTCGGGTACTGTGACCCGTCGGAAATTCCCGCGGACCCAAAGG
AGCGCACAAGGTGGTGTTTCCAGCAGGCCGGTGCCGTGGAGCTCACGCAC
AATTGGGGGACGGAGAATGACGCCGACCTCAAGTACCATTCTGGCAACGA
GGATCCTCGAGGATTCGGACACATCGGTATTACCGTGCCTGACGTGTACA
AGGCATGCGAAAGATTCGAAAAGGAGGGAGTGAAGTTCCGCAAGACACCT
GATGGGGGCAACATGAAGGGCCTGGCGTTCATTTTCGGCGAGTGGCATTA
TCCCGACGGATACTCCATCGAAATTCTTGGGGCGGATCAAATGAGTAAGG
ACTTTTCGAAGTACACGCCCGGGGGGGAATCCACCAGCAAGTAG
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