mRNA_Ecto-sp13_S_contig10710.651.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10710.651.1
Unique NamemRNA_Ecto-sp13_S_contig10710.651.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10710.651.1 vs. uniprot
Match: D7G7K2_ECTSI (Transferase, transferring pentosyl groups, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K2_ECTSI)

HSP 1 Score: 632 bits (1630), Expect = 2.350e-224
Identity = 329/374 (87.97%), Postives = 341/374 (91.18%), Query Frame = 1 
Query:    4 PWQPGGPEVHAILGATGLVVGSVAYAAGNWASHGTDCSLLNLSDEAFPEELVDRLTNPTRRYLHIPLKGGKKANPPRYWQKTVFPAALVFIASAVRDLRLPPAPKGMATDQSAAVVHVEHHGEVAGPLAHEGPHVGEEAAASPDRSLPIYCSGKVGETSAVDAPDPARMEVAEGISSPAEADTRAIATSSAQPRLRQQWQAKRGGAGVMPGPVSAGKCLVVCPTGADASVVVCLCALVAFFPPGPQANTNTSSGNRNQQPXXXXXXXXXSPSSRHALLADETGGSDSGLWLGGGRFSVLRRTAAGVVTKSQLRWRFLLMQQECPWARPPRRSMQELNEYFMTPGEHSWWTLSDRYHLRQADSLERSDAVPSMHR 1125
            PWQPGGPEVHA+LGATGLVVGSV YAAGNWASHGTDCSLLNLSDEAFPEELV+RLT PTRRYLH+PLKGGKKANPPRYWQ+TVFPAALVFIASAV DLRLP A KGMATDQSAAVVH    GE  GPL HEG H+GEEAAASPDRSLP YC GKVGETSAVDAPDP ++E A GISSPAEADTRAIATSSAQPRLRQQWQA+RGGAGVMPGPVSAGKCLVVC TGADASVVVCLCALVAFFPPGPQA+TNT SGNR     XXXXXX  SPSSRHAL+ADET G DSGLWLGGGRFSVLRR+AAGVVTKSQLRWRFLLMQQECPWARPPRRSMQELNEYFMTPGEHSWWTLSDRYHL +ADSLER DAV  MHR
Sbjct:  175 PWQPGGPEVHAVLGATGLVVGSVVYAAGNWASHGTDCSLLNLSDEAFPEELVERLTGPTRRYLHVPLKGGKKANPPRYWQRTVFPAALVFIASAVGDLRLPTARKGMATDQSAAVVH----GEATGPLVHEGAHLGEEAAASPDRSLPSYCGGKVGETSAVDAPDPTQLEGAGGISSPAEADTRAIATSSAQPRLRQQWQAERGGAGVMPGPVSAGKCLVVCATGADASVVVCLCALVAFFPPGPQASTNTPSGNRXXX--XXXXXXLPSPSSRHALVADETDGGDSGLWLGGGRFSVLRRSAAGVVTKSQLRWRFLLMQQECPWARPPRRSMQELNEYFMTPGEHSWWTLSDRYHLGEADSLERLDAVLPMHR 542
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10710.651.1 vs. uniprot
Match: A0A6H5KM30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM30_9PHAE)

HSP 1 Score: 580 bits (1495), Expect = 3.170e-201
Identity = 310/408 (75.98%), Postives = 321/408 (78.68%), Query Frame = 1 
Query:    1 EPWQPGGPEVHAILGATGLVVGSVAYAAGNWASHGTDCSLLNLSDEAFPEELVDRLTNPTR---------------------------------RYLHIPLKGGKKANPPRYWQKTVFPAALVFIASAVRDLRLPPAPKGMATDQSAAVVHVEHHGEVAGPLAHEGPHVGEEAAASPDRSLPIYCSGKVGETSAVDAPDPARMEVAEGISSPAEADTRAIATSSAQPRLRQQWQAKRGGAGVMPGPVSAGKCLVVCPTGADASVVVCLCALVAFFPPGPQANTNTSSGNRNQQPXXXXXXXXXSPSSRHALLADETGGSDSGLWLGGGRFSVLRRTAAGVVTKSQLRWRFLLMQQECPWARPPRRSMQELNEYFMTPGEHSWWTLSDRYHLRQADSLERSDAVPSMHR 1125
            EPWQPGGPEVHA+LGATGLVVGS+AYAA NWASHGTDCSLLNL          DR   P R                                 R LH     GKKANPPRYWQKTVFPAALVFIASAV DLRLPPA KGMATDQSAAV+HV+ HGE A P  HEGPHVGEEAAASPDR+LP  C GKVGETSAVD PDPAR+E AEGISSPAEADTRAIATSSAQPRLRQQ QAKRGGAGV  GPV+AGKCLVVCPTGADASVVVCLCALVAFFPPGPQANTNT SGN+NQQP         SPSSRHAL+ADE  G +SGLWLGGG FSVL RTAAGVVTKSQLRWRFLLMQQECPWA PPRRSMQELNEYFMTPGEHSWWTLSDRYHLR+ADSLE SDAVP MHR
Sbjct:  324 EPWQPGGPEVHAVLGATGLVVGSIAYAARNWASHGTDCSLLNLRSS-------DRRAAPLRAGCGGKGTNGRLCSCPGSPWRVMVTVPEIVLIYRPLHSFRTPGKKANPPRYWQKTVFPAALVFIASAVGDLRLPPARKGMATDQSAAVIHVQRHGEAAEPFVHEGPHVGEEAAASPDRNLPSCCGGKVGETSAVDTPDPARLEGAEGISSPAEADTRAIATSSAQPRLRQQCQAKRGGAGVTMGPVTAGKCLVVCPTGADASVVVCLCALVAFFPPGPQANTNTPSGNQNQQPQQQQLL---SPSSRHALVADEADGGNSGLWLGGGGFSVLPRTAAGVVTKSQLRWRFLLMQQECPWAHPPRRSMQELNEYFMTPGEHSWWTLSDRYHLREADSLEPSDAVPPMHR 721
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10710.651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7K2_ECTSI2.350e-22487.97Transferase, transferring pentosyl groups, putativ... [more]
A0A6H5KM30_9PHAE3.170e-20175.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10710contigEcto-sp13_S_contig10710:3551..5718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score645.6
Seed ortholog evalue1.4e-182
Seed eggNOG ortholog2880.D7G7K2
Preferred nameRIT1
Model size1128
KEGG koko:K15463
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043399,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
Exons4
EggNOG free text desc.tRNA A64-2'-O-ribosylphosphate transferase activity
EggNOG OGsKOG2634@1,KOG2634@2759
Ec32 ortholog descriptionInitiator tRNA phosphoribosyl transferase
Ec32 orthologEc-22_002100.1
Cds size1128
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.7720022-CDS-Ecto-sp13_S_contig10710:3550..44671681462548.7720022-CDS-Ecto-sp13_S_contig10710:3550..4467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10710 3551..4467 -
1681462548.7843378-CDS-Ecto-sp13_S_contig10710:4691..47711681462548.7843378-CDS-Ecto-sp13_S_contig10710:4691..4771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10710 4692..4771 -
1681462548.8011973-CDS-Ecto-sp13_S_contig10710:5082..51611681462548.8011973-CDS-Ecto-sp13_S_contig10710:5082..5161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10710 5083..5161 -
1681462548.813952-CDS-Ecto-sp13_S_contig10710:5666..57181681462548.813952-CDS-Ecto-sp13_S_contig10710:5666..5718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10710 5667..5718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10710.651.1prot_Ecto-sp13_S_contig10710.651.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10710 3551..5718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10710.651.1

>prot_Ecto-sp13_S_contig10710.651.1 ID=prot_Ecto-sp13_S_contig10710.651.1|Name=mRNA_Ecto-sp13_S_contig10710.651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
EPWQPGGPEVHAILGATGLVVGSVAYAAGNWASHGTDCSLLNLSDEAFPE
ELVDRLTNPTRRYLHIPLKGGKKANPPRYWQKTVFPAALVFIASAVRDLR
LPPAPKGMATDQSAAVVHVEHHGEVAGPLAHEGPHVGEEAAASPDRSLPI
YCSGKVGETSAVDAPDPARMEVAEGISSPAEADTRAIATSSAQPRLRQQW
QAKRGGAGVMPGPVSAGKCLVVCPTGADASVVVCLCALVAFFPPGPQANT
NTSSGNRNQQPQQPQQPQLPSPSSRHALLADETGGSDSGLWLGGGRFSVL
RRTAAGVVTKSQLRWRFLLMQQECPWARPPRRSMQELNEYFMTPGEHSWW
TLSDRYHLRQADSLERSDAVPSMHR*
back to top

mRNA from alignment at Ecto-sp13_S_contig10710:3551..5718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10710.651.1 ID=mRNA_Ecto-sp13_S_contig10710.651.1|Name=mRNA_Ecto-sp13_S_contig10710.651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10710:3551..5718- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCATGGCAACCCGGAGGGCCGGAAGTGCACGCGATTCTCGGTGCCAC
GGGTGAGAGGGAGGGCAACAAGAAGGGGTGGGGATCGTTCTGCAGTAGGA
CGTCCTATGTAAGTACAGTGAGGGTCCCCGAACAAGGCGGTGGGGGCAGC
TGATAATAATGTGGAGCAGCCGCCGTATTCAACGTGTAGATTAACCTTAT
GATTCCGTCGATGCTAGCCAATTTCACACGCCTGTTATGGGGCGACCGCC
TTATTCAGACTGCCTTACTCGGGGGCCCTCCACTGTATGCCCGCAACCCC
GCTGTGAGCTTGTATCCTCATTGTCTGGGGGTATTGCTCGCCATCTAAAA
TACAAAAATACAAAAAGTATTCTCACATGGAAACCGCCAGCCTTGCACTG
CCCCGAGTACGCCAACGCTGCATCCTGGTACTCCAGGCGGTGTTCGGTTG
AGTACTCGTGCTGCACCCGGAGGCGGCGCGGGTCTGTTTCCATACGTGAC
CACTTTTTTGACTGATGCGTATCTCGCCCCGGCGACGTGTGGCCCGTTGT
CTCGCAGGGCTAGTGGTGGGGAGCGTTGCCTACGCTGCGGGAAACTGGGC
TTCTCACGGAACGGACTGCTCCTTGCTAAACCTTAGGTATGCCTTTGTGT
CAGGACGAAGGGCGATGGGCGCTGCGCGCAAGCACAACAGCTCCTCGCCT
GTGTTAACGCAGCTAGTCTGGTATCCTTCGTGCCAGCTCAACAACTCTCT
CCTCGCTACACAAGCATCTTGGATACCGACTGTTGGCCTTTGTTGTTTCT
TTCCTCGTATGTTTCGTCTGTCTTGGCCTCTCCGGTCGAGTTGGTCAGCG
CAAGCCCCCCCCCCCGCGCTTCGTGCTCCACTACCTCCCCATTCGTTTCC
GTGCCATTCCGTGCGTGTCGTCGCATCGCCCTTGCGCAATGCTGCAGCGA
CGAAGCCTTCCCCGAAGAGCTCGTGGACAGGTTGACTAACCCAACCAGGC
GGTACCTTCATATTCCGCTCAAAGGAGGTGCGTAGCACACTCTTAGATGT
AGCACACAGTCGCCTAAATGTTTGTCTTTGCAGGAGCTCAGACCGCCTCG
CGGTACCCTTGCGGGAGGGATGCGGGGGCAAGGGCACGAACGGTCGGCTA
TGTAGTTTTATGTAGTTGCCCAAGAAGCCCTTGGCGTGTGATGGCAACAG
TGCCGGAAATCGTCTTGATCTACCTCCTTTTGCACTCGTGTCGCACCCTA
GGGAAGAAGGCAAATCCGCCGAGGTACTGGCAGAAGACGGTCTTTCCTGC
CGCTTTGGTGTTCATCGCGTCAGCTGTCCGGGACTTACGGCTGCCGCCGG
CACCCAAGGGTATGGCCACGGATCAGTCGGCGGCCGTGGTTCATGTAGAA
CACCACGGAGAAGTCGCGGGGCCTTTGGCCCACGAGGGGCCACATGTTGG
TGAGGAGGCGGCGGCAAGTCCCGACAGGAGCTTGCCGATTTACTGCAGTG
GGAAGGTCGGAGAAACGAGTGCCGTGGACGCACCCGACCCTGCGCGAATG
GAAGTGGCGGAAGGGATATCTTCACCGGCGGAGGCGGACACAAGAGCGAT
TGCGACGTCGTCTGCTCAACCACGTTTGCGGCAACAGTGGCAAGCAAAGC
GCGGTGGTGCCGGGGTGATGCCGGGACCGGTCAGCGCGGGCAAGTGCCTC
GTTGTGTGTCCCACCGGAGCGGACGCTTCGGTAGTTGTCTGTCTCTGCGC
CCTTGTGGCTTTCTTCCCTCCAGGCCCACAGGCAAACACTAACACGTCGT
CTGGGAATCGAAATCAGCAGCCGCAGCAGCCGCAGCAGCCGCAGCTACCG
TCGCCATCGTCGCGACACGCCCTTCTCGCCGATGAGACCGGCGGCAGCGA
CTCCGGGCTGTGGTTAGGAGGCGGCAGGTTTTCGGTTCTTCGACGAACTG
CCGCAGGCGTCGTGACCAAGTCCCAGTTGCGTTGGCGTTTTCTGCTGATG
CAGCAAGAGTGTCCTTGGGCGCGCCCGCCGCGGCGCTCGATGCAGGAGCT
GAACGAGTACTTCATGACGCCAGGGGAACACTCTTGGTGGACGTTGAGCG
ATCGGTATCATCTCAGGCAGGCTGACTCGCTCGAGCGTTCAGATGCAGTA
CCCTCTATGCATAGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10710:3551..5718-

>mRNA_Ecto-sp13_S_contig10710.651.1 ID=mRNA_Ecto-sp13_S_contig10710.651.1|Name=mRNA_Ecto-sp13_S_contig10710.651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10710:3551..5718- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCATGGCAACCCGGAGGGCCGGAAGTGCACGCGATTCTCGGTGCCAC
GGGGCTAGTGGTGGGGAGCGTTGCCTACGCTGCGGGAAACTGGGCTTCTC
ACGGAACGGACTGCTCCTTGCTAAACCTTAGCGACGAAGCCTTCCCCGAA
GAGCTCGTGGACAGGTTGACTAACCCAACCAGGCGGTACCTTCATATTCC
GCTCAAAGGAGGGAAGAAGGCAAATCCGCCGAGGTACTGGCAGAAGACGG
TCTTTCCTGCCGCTTTGGTGTTCATCGCGTCAGCTGTCCGGGACTTACGG
CTGCCGCCGGCACCCAAGGGTATGGCCACGGATCAGTCGGCGGCCGTGGT
TCATGTAGAACACCACGGAGAAGTCGCGGGGCCTTTGGCCCACGAGGGGC
CACATGTTGGTGAGGAGGCGGCGGCAAGTCCCGACAGGAGCTTGCCGATT
TACTGCAGTGGGAAGGTCGGAGAAACGAGTGCCGTGGACGCACCCGACCC
TGCGCGAATGGAAGTGGCGGAAGGGATATCTTCACCGGCGGAGGCGGACA
CAAGAGCGATTGCGACGTCGTCTGCTCAACCACGTTTGCGGCAACAGTGG
CAAGCAAAGCGCGGTGGTGCCGGGGTGATGCCGGGACCGGTCAGCGCGGG
CAAGTGCCTCGTTGTGTGTCCCACCGGAGCGGACGCTTCGGTAGTTGTCT
GTCTCTGCGCCCTTGTGGCTTTCTTCCCTCCAGGCCCACAGGCAAACACT
AACACGTCGTCTGGGAATCGAAATCAGCAGCCGCAGCAGCCGCAGCAGCC
GCAGCTACCGTCGCCATCGTCGCGACACGCCCTTCTCGCCGATGAGACCG
GCGGCAGCGACTCCGGGCTGTGGTTAGGAGGCGGCAGGTTTTCGGTTCTT
CGACGAACTGCCGCAGGCGTCGTGACCAAGTCCCAGTTGCGTTGGCGTTT
TCTGCTGATGCAGCAAGAGTGTCCTTGGGCGCGCCCGCCGCGGCGCTCGA
TGCAGGAGCTGAACGAGTACTTCATGACGCCAGGGGAACACTCTTGGTGG
ACGTTGAGCGATCGGTATCATCTCAGGCAGGCTGACTCGCTCGAGCGTTC
AGATGCAGTACCCTCTATGCATAGATAG
back to top