mRNA_Ecto-sp13_S_contig19995.6505.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19995.6505.1
Unique NamemRNA_Ecto-sp13_S_contig19995.6505.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.770e-54
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGRPWSG 279
            MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGIL VTNLVLFGAAVAEMVWMWCAVKMEENG PWSG
Sbjct:  942 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILVVTNLVLFGAAVAEMVWMWCAVKMEENGSPWSG 1034
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 8.710e-21
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGRP 270
            M FAF+V+SE LAP+AS WD W+SR GH ++FV+M+VALLLKVDVS+ER  SQR+F  +L   +  +    V E V + CA+ + E   P
Sbjct: 1966 MAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTCALTVGERDGP 2055
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.080e-20
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGRP 270
            M FAF+++SE LAPFAS WD W++R GH ++FV+M++ALLLKVDVS ER GSQR++  +L   +  +  A + E   +  ++K+E+   P
Sbjct: 1155 MAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKVEQRQEP 1244
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.560e-20
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGRP 270
            MT  F V+SE L P A AWD WVSR  H ++F++++VALLLKVDVSDE+  SQ++F  +L   +  +  A V E + + C  +++E   P
Sbjct:   55 MTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVLGCPSRVKEQHEP 144
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.110e-19
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGRP 270
            MT  F V+SE L P+A AWD WVSR  H ++F++++VALLLKVDVS+E+  SQ++F  +L   +  +  A V E + + C  +++E   P
Sbjct:  916 MTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRVKEQDEP 1005
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.320e-19
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGRP 270
            MT  F V+SE L P+A AWD WVSR  H ++F++++VALLLKVDVS+E+  SQ++F  +L   +  +  A V E + + C  +++E   P
Sbjct: 2654 MTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRVKEQDEP 2743
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.270e-18
Identity = 37/76 (48.68%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMV 228
            + FAF+++SEVL+P++S WD WV+R GH+++FV+MFVALLLKVDV+DE   SQ++F  +L   ++ +    V E +
Sbjct:  597 IAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAI 672
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.320e-18
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   13 FLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGR 267
            F +ISE LAP+AS WD W+ R GH ++ V+M+VALLLKVDVSDER  SQR+F  +L   ++ + G  + E++    ++ +E+ G+
Sbjct:  880 FAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKRGQ 964
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.140e-18
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAE 222
            + FAF ++SE LAP+AS WD W+SR GHI++F++M+VALLLKVDVSDER  SQ +F  +L   ++ +    + E
Sbjct: 1411 IAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVE 1484
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BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 8.160e-18
Identity = 39/87 (44.83%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEEN 261
            + F F++ISE LAP+AS WD W++R GH+++  +M++ALLLKVDVS ER  SQ +F  +L V ++V+    VAE + +  A++ E  
Sbjct: 1511 VAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLALALRAERR 1597
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19995.6505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV1_ECTSI3.770e-5497.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI8.710e-2151.11Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G301_ECTSI4.080e-2046.67Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KP34_9PHAE7.560e-2044.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH1_ECTSI9.110e-1943.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI9.320e-1943.33LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LH65_ECTSI2.270e-1848.68Polymorphic outer membrane protein G/I family prot... [more]
D7G2Z8_ECTSI4.320e-1845.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0E9_9PHAE8.140e-1851.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSC0_ECTSI8.160e-1844.83Polymorphic Outer membrane protein G/I family n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19995contigEcto-sp13_S_contig19995:2128..2406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score190.7
Seed ortholog evalue3.2e-46
Seed eggNOG ortholog2880.D7FRV1
Model size279
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2BFIX@1,2S176@2759
Cds size279
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463005.2991235-CDS-Ecto-sp13_S_contig19995:2127..24061681463005.2991235-CDS-Ecto-sp13_S_contig19995:2127..2406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19995 2128..2406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19995.6505.1prot_Ecto-sp13_S_contig19995.6505.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19995 2128..2406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19995.6505.1

>prot_Ecto-sp13_S_contig19995.6505.1 ID=prot_Ecto-sp13_S_contig19995.6505.1|Name=mRNA_Ecto-sp13_S_contig19995.6505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDERE
GSQRLFAGILGVTNLVLFGAAVAEMVWMWCAVKMEENGRPWSG
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mRNA from alignment at Ecto-sp13_S_contig19995:2128..2406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19995.6505.1 ID=mRNA_Ecto-sp13_S_contig19995.6505.1|Name=mRNA_Ecto-sp13_S_contig19995.6505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19995:2128..2406+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTTCGCGTTCTTGGTCATATCCGAGGTGCTTGCTCCGTTCGCTTC
TGCTTGGGATTGCTGGGTCTCACGCTGCGGACACATCTTAATTTTCGTGA
CCATGTTCGTGGCGCTCTTGCTCAAAGTTGATGTGTCGGACGAGCGTGAA
GGTAGCCAGAGACTGTTTGCAGGAATCCTTGGGGTGACGAATTTGGTGTT
ATTTGGCGCCGCCGTGGCGGAGATGGTGTGGATGTGGTGTGCGGTCAAGA
TGGAGGAAAATGGGAGGCCGTGGTCTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19995:2128..2406+

>mRNA_Ecto-sp13_S_contig19995.6505.1 ID=mRNA_Ecto-sp13_S_contig19995.6505.1|Name=mRNA_Ecto-sp13_S_contig19995.6505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19995:2128..2406+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTTCGCGTTCTTGGTCATATCCGAGGTGCTTGCTCCGTTCGCTTC
TGCTTGGGATTGCTGGGTCTCACGCTGCGGACACATCTTAATTTTCGTGA
CCATGTTCGTGGCGCTCTTGCTCAAAGTTGATGTGTCGGACGAGCGTGAA
GGTAGCCAGAGACTGTTTGCAGGAATCCTTGGGGTGACGAATTTGGTGTT
ATTTGGCGCCGCCGTGGCGGAGATGGTGTGGATGTGGTGTGCGGTCAAGA
TGGAGGAAAATGGGAGGCCGTGGTCTGGC
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