mRNA_Ecto-sp13_S_contig1999.6498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1999.6498.1
Unique NamemRNA_Ecto-sp13_S_contig1999.6498.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 1.690e-175
Identity = 258/271 (95.20%), Postives = 260/271 (95.94%), Query Frame = 1
Query:    1 MRSGAIAVLALVRAVLLVPSVTAYIPTSTSTSKSAWVAPPHRCSTRCRARSSSTIGDSTASDPVGGAGIEPADAAKPSLKVIRGRAGPADATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            MRSG IAVLA VRAVLLVP+VTAYIPTSTSTSKSAW+APPHRCSTRCRARSSSTIG STA DPVGGAGIEPADAAKP LKVIRGRAGP DATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK     VPTEEFFAKDMGLALEMTPNYEDFSCQ
Sbjct:    1 MRSGVIAVLAFVRAVLLVPNVTAYIPTSTSTSKSAWIAPPHRCSTRCRARSSSTIGGSTALDPVGGAGIEPADAAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK-----VPTEEFFAKDMGLALEMTPNYEDFSCQ 266          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 392 bits (1007), Expect = 2.010e-126
Identity = 215/271 (79.34%), Postives = 218/271 (80.44%), Query Frame = 1
Query:    1 MRSGAIAVLALVRAVLLVPSVTAYIPTSTSTSKSAWVAPPHRCSTRCRARSSSTIGDSTASDPVGGAGIEPADAAKPSLKVIRGRAGPADATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            M+SGAIA LA   AVLLVP VTAYI TSTSTS SA VAPPHRCSTRCRARSSSTIG STASD VGGAGIEPADAAKP LKVIRGRAGP  ATPTYDDTRPLDRILLGLFRSKLAEEVG DGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFP+WLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLND+E                                       VPTEEFFAKDMGLALEMTPNYEDFSCQ
Sbjct:    1 MKSGAIAPLAFFCAVLLVPKVTAYILTSTSTSISALVAPPHRCSTRCRARSSSTIGGSTASDSVGGAGIEPADAAKPPLKVIRGRAGPTAATPTYDDTRPLDRILLGLFRSKLAEEVGEDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPAWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDVE---------------------------------------VPTEEFFAKDMGLALEMTPNYEDFSCQ 232          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA)

HSP 1 Score: 241 bits (614), Expect = 8.910e-74
Identity = 115/170 (67.65%), Postives = 141/170 (82.94%), Query Frame = 1
Query:  310 ILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEK--FPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            +LLGLFR KLA E+  DG   +PGY GL++MI+ LN+   +P+   TQ+A+R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTLVASQWLMGPSK+ND+EID G +GVGHGLLV+RCR+LE AGCASVC+NTCK     +PT+EFF KDMGL L+MTP+Y+DFSCQ
Sbjct:    1 MLLGLFRKKLAAELQYDGS--DPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCK-----IPTQEFFMKDMGLPLQMTPDYDDFSCQ 163          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO)

HSP 1 Score: 231 bits (588), Expect = 4.280e-69
Identity = 108/188 (57.45%), Postives = 140/188 (74.47%), Query Frame = 1
Query:  256 AGPADATPTYDD--TRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            AGP D  P+Y D  ++P++ +++ LFR K+   +G D + +  GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMFSKPFP FS RLNA  T +  QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK     +PT+ FF+KDMGL L MTPNYEDFSCQ
Sbjct:   42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELY--GYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVEIDGGIVGKGHGVLVERCRYLEQAGCASVCINSCK-----IPTQTFFSKDMGLQLTMTPNYEDFSCQ 222          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC)

HSP 1 Score: 228 bits (582), Expect = 1.170e-68
Identity = 105/189 (55.56%), Postives = 140/189 (74.07%), Query Frame = 1
Query:  253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            +AGP    P+Y+  D++PL+R ++ LFR K+   +G + D  + GYD ++D+ ++LN K  + R TQ  +R++L SLFPSWLP +F VMFSKP P  S +LNAWVT++  QWLMGP K+ND+E+D G +G G G+LVERCR+LE  GCASVC+N+CK     +PT+EFFAKDMGL L MTPNYEDFSCQ
Sbjct:    7 KAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSD--KEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVELDGGRIGSGQGVLVERCRYLEETGCASVCLNSCK-----IPTQEFFAKDMGLPLTMTPNYEDFSCQ 188          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE)

HSP 1 Score: 230 bits (586), Expect = 1.280e-68
Identity = 110/189 (58.20%), Postives = 138/189 (73.02%), Query Frame = 1
Query:  253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            +AGP DA P Y   D++PL+ I++ LFR K+ E +G D      GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMFS+P P FS RLNA  T +  QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK     VPT+ FF KDMGL L MTPNY+DFSCQ
Sbjct:   50 QAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKL--SGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVEIDGGKVGTGHGVLVERCRYLEQAGCASVCINSCK-----VPTQSFFEKDMGLPLTMTPNYDDFSCQ 231          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO)

HSP 1 Score: 224 bits (572), Expect = 4.100e-67
Identity = 104/189 (55.03%), Postives = 138/189 (73.02%), Query Frame = 1
Query:  253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            +AGP +  P Y   D++PL+++++ LFR K+   +G D      GY+ ++D+ + LN  +   R+ Q  +R++LKSLFPSWLP +FAVMFSKP P FS +LNA  T +  QWLMGP K+ND+E+DDG+VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNYEDFSCQ
Sbjct:    1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQL--SGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQ 182          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO)

HSP 1 Score: 225 bits (574), Expect = 1.160e-66
Identity = 107/189 (56.61%), Postives = 136/189 (71.96%), Query Frame = 1
Query:  253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            +AGP    P+Y   D +PL+R+++ LFR K+ E +G D      GY  ++D+ + LN ++ + R TQ A+RR+L SLFPSWLP +F VMFS P PAFS RLNA  T +  QWLMGP K+ND+E+D G VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNYEDFSCQ
Sbjct:   64 QAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQL--QGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVELDSGEVGSGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQ 245          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A2V0P122_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO)

HSP 1 Score: 226 bits (576), Expect = 1.490e-66
Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 1
Query:  208 EPADAAKPSLKVIRGRAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            E AD A P+   +R +AGPA A P Y   D +PL+R+++ LFR K+AE +G D      GY  ++D+ + LN ++P+ R TQ  +R +L SLFP WLP +F  MFS+P PA S RLNA+ T +  QWLMGP K+ND+EID G VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNY+DFSCQ
Sbjct:    9 EAADGAAPAA--LR-QAGPAAAAPDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQL--QGYPAIIDLTRRLNRQYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVEIDGGQVGAGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYDDFSCQ 202          
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A2J8AIV6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO)

HSP 1 Score: 222 bits (566), Expect = 2.860e-64
Identity = 105/182 (57.69%), Postives = 135/182 (74.18%), Query Frame = 1
Query:  274 TPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
            TP+Y   D +PL++I++ LFR K+   VG D      GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMF++P P  S R+NA  T +  QWLMGP K+ND+E DDGTVG GHG+LVERCR+LE AGCA+VC+N+CK     VPT+ FFAKDMGLAL MTPNY+DFSCQ
Sbjct:  171 TPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPL--SGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVETDDGTVGEGHGVLVERCRYLEQAGCAAVCINSCK-----VPTQSFFAKDMGLALTMTPNYDDFSCQ 345          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW1_ECTSI1.690e-17595.20D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5K8Y9_9PHAE2.010e-12679.34PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A835ZDY9_9STRA8.910e-7467.65D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
A0A8J4BT63_9CHLO4.280e-6957.45D27-like_C domain-containing protein n=2 Tax=Volvo... [more]
I0YX40_COCSC1.170e-6855.56D27-like_C domain-containing protein n=1 Tax=Cocco... [more]
A8IC34_CHLRE1.280e-6858.20Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
A0A7J7QQS2_9CHLO4.100e-6755.03D27-like_C domain-containing protein n=1 Tax=Scene... [more]
A0A0D2MYG1_9CHLO1.160e-6656.61D27-like_C domain-containing protein n=1 Tax=Monor... [more]
A0A2V0P122_9CHLO1.490e-6654.90D27-like_C domain-containing protein n=1 Tax=Raphi... [more]
A0A2J8AIV6_9CHLO2.860e-6457.69D27-like_C domain-containing protein n=1 Tax=Tetra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1999contigEcto-sp13_S_contig1999:7030..11189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score507.7
Seed ortholog evalue4.3e-141
Seed eggNOG ortholog2880.D8LEW1
Model size1472
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.Domain of unknown function (DUF4033)
EggNOG OGs28YJ7@1,2R5D2@2759
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-21_005770.1
Cds size1023
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1999.6498.1prot_Ecto-sp13_S_contig1999.6498.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1999 7030..10740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.9171274-CDS-Ecto-sp13_S_contig1999:7029..72691681463004.9171274-CDS-Ecto-sp13_S_contig1999:7029..7269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 7030..7269 +
1681463004.9310434-CDS-Ecto-sp13_S_contig1999:8626..88441681463004.9310434-CDS-Ecto-sp13_S_contig1999:8626..8844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 8627..8844 +
1681463004.9426253-CDS-Ecto-sp13_S_contig1999:9251..94081681463004.9426253-CDS-Ecto-sp13_S_contig1999:9251..9408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 9252..9408 +
1681463004.9548917-CDS-Ecto-sp13_S_contig1999:9723..98401681463004.9548917-CDS-Ecto-sp13_S_contig1999:9723..9840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 9724..9840 +
1681463004.962976-CDS-Ecto-sp13_S_contig1999:10202..102831681463004.962976-CDS-Ecto-sp13_S_contig1999:10202..10283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 10203..10283 +
1681463004.9710526-CDS-Ecto-sp13_S_contig1999:10530..107401681463004.9710526-CDS-Ecto-sp13_S_contig1999:10530..10740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1999 10531..10740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.9798312-UTR-Ecto-sp13_S_contig1999:10740..111891681463004.9798312-UTR-Ecto-sp13_S_contig1999:10740..11189Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1999 10741..11189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1999.6498.1

>prot_Ecto-sp13_S_contig1999.6498.1 ID=prot_Ecto-sp13_S_contig1999.6498.1|Name=mRNA_Ecto-sp13_S_contig1999.6498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
MRSGAIAVLALVRAVLLVPSVTAYIPTSTSTSKSAWVAPPHRCSTRCRAR
SSSTIGDSTASDPVGGAGIEPADAAKPSLKVIRGRAGPADATPTYDDTRP
LDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQE
ASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSK
LNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEF
FAKDMGLALEMTPNYEDFSCQQWNTIRRLVRVVVRPHVPVFVQQDSVGER
HGRGVSGGVFRAMPVARSAEAAEPAGSRTVSSNRYRRGWQ*
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mRNA from alignment at Ecto-sp13_S_contig1999:7030..11189+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1999.6498.1 ID=mRNA_Ecto-sp13_S_contig1999.6498.1|Name=mRNA_Ecto-sp13_S_contig1999.6498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4160bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:7030..11189+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTCAGGAGCTATTGCAGTTCTTGCGTTAGTCCGCGCTGTGCTGTT GGTACCGAGCGTCACCGCCTACATCCCAACATCAACATCAACATCGAAAT CAGCCTGGGTTGCGCCGCCGCATCGATGTAGCACGCGATGTCGAGCCCGG TCTTCGTCCACGATCGGGGACAGCACTGCTTCGGACCCTGTCGGAGGTGC CGGTATCGAGCCTGCCGACGCAGCAAAACCTTCACTGAAGGTGACGGTGG GGTGGTATCTATTTGCCCATCATGATACGCTCGGTGATACAATAGTAAGT GATTTCTTGTTCGCAAACATACGCGTGTCTGTGCATCTAAGCTGTACTAA GTTTCATGTTCTGGAATAAGACGAGTCTACATCTGCATCTCTCATCTATA CATGACGTGAAAAAGTATGCATATACACAATAGAAAAACATAGACTACTT ATTCTTTCGGCGGGACCATTTACCCCACCGGCGGGGCAATTTCTCATCCG CCCCACAGGTGAAAAAAAATATGTCCACCGGTGGGACAAGCAAGCCTTGT TTACGCCACCAGCTGTACCTCGCCTTCCAAAAACTCTAGTCCACACGGGA CATGAACGAGTGCGTTGCTGCGGTGCAGGGGGCTTTCATGGGACCCGTCG TGAAGCCGGTACAGTTTTGGTGCAGCCACGGCCGGTGGGGTGGATACAGC TGCCACCCCAGTGGTGGGGTAGTGTAGATAGCCTGGCTTACGCCTCACCA CCAGGATGTCGCCCTACAAGACTCCGATCGACTCACAAGCACCGGTAGAA GTGTGTAGTTGATGCATACACAGCACGTAGCAGCGGCCAGCGGCTGAGGG GGGTATCAGGTGCACGAATCCCGCCGCAGAGCGCCAAACAACTCACTCAC GTGGAAGCCGAGCACGGCCTTCGCTCTTCTCGCAGAAAGACTTCCTGCAG CTGCACTTGGTATCCCCTCCACTGCAGCTGTTTCCGTCTTCTGCCTGAAC GAAACAACCCGTACCTCCCCGCCGTCTGCTGCTTCTCAGCCACGCGTTTG CACCGGGGTCTTTCCTCCAGCAAGTGGCTAAGAAGCAGCAGACGATTATT GTGGGCGGGGCGGACAGCCCTCCTGTGATCGAGGCAGCGGCCGACGGCGG GGAGGTGCAGGTTATCGATGTGTTTACCTACCCATGCAACACAATAATTT GTTCTTTTTACTTTTAGCGCGCGGTCAGCCATCGTTCCCGCGCGAAGGTG GAACTGCCTTCTTCAAAGCTTCCTCCGAAGAGAAGCATGCAGCCGTATCT ACCTGCCACCATCCTCGTCAAGCTGGATGCTCACACCTGCTCATGTGCAT ATTATAGGTAGAGCTATTAGAGACTCCGTACGTGTTTCCAGGTGTCGGAC TTCCGAACCCCTGACCGACGATCCGCATTGTTGCAAGGATTTTGCCGGAA TGTTTTCGATTCTTAATGGTTTTCGATCTTTGGATGTGTCCGGTTTTCTT CAAATACATCTCTGTCGTCAAGCGAGTTGTTTGTAGATACGAAGGAACTT CACCCCACGGACGGTCTCTTCTCTCTACCTCTGCGCATTACGCATAGGTA ATCCGAGGTCGCGCAGGGCCTGCAGACGCGACGCCCACGTACGACGACAC TCGACCGTTGGATCGGATACTACTTGGCCTGTTTCGGTCAAAGCTGGCGG AAGAGGTCGGGGGGGATGGCGATGCCTTCGAGCCTGGCTACGACGGTCTG ATGGACATGATCAAGGTGTTGAACGAGAAGTTCCCTTCGAAGCGGAAGAC GCAGGAGGCGTCCAGGTACAGTGCAGTGGGAGGGCATCAGTAACACCGGT TGATTAGCGCCGGTGGCCCTATATAGCGCTGGTGAAATTGCTGGGCACAG GCTGAATCACCAAGTCATTGTGTGCATTGAATAGCACGGTCCCTCTGAAT AGCGCGGGTCGATGCGCCAGGAACATACCGCCGTTGTTGAGCAGACCCCC CCTGTATTTGTTTGTTGATGGCATACATGTCAGCACCGAGGAAGCGTTCG ACGGAGCACCTGGTAGCCCAATATCAGCGAGTATTGTTCACGTACTGGAG GAGTCAGAGGTTTGACCATTGTTGTCCCCTCCTTGCCCAGCTTCCACACT TTTTTTTTAGCAACCCTTTCACGAATTTCCTGTTCCTTCCCACGAATCTC CTCTTCACTTACTTTGCTGCAGGCGAGTATTGAAGTCCCTCTTCCCTTCT TGGCTGCCGGCAAGCTTCGCGGTGATGTTCTCGAAGCCGTTCCCGGCCTT CTCTTCGCGCTTGAACGCCTGGGTGACCCTCGTCGCGTCTCAGTGGCTCA TGGGGCCATCGAAGCTCAACGATATCGAGGTAAGGCGATCTCGTAATTAC AGCAGTAATCGGCAAAGAGCCCCATTGCCGTGTCTATGTGGCGTACTTGG CGAGAGAGCACGGACTGCCGACAGCGCTTGATTCCCGCCCTGCCGCCTGA GGTTGTAGTGTGTTCTCGTCACGCCTAAGCGCCGTGGCAACATACTTTCT CGGCGAAACAACTTGCCTGGAATACGAAATTCGACTCCCTGTACGGGCTT ATTCTACGGCACAATGGATCGGGTGTTTCTGCTGTCTCCGTATTACATTG TGAAGTACCGTCGAAACGTGTTTACGCTCCTACCGTTGCGGCAGATCGAT GACGGGACTGTGGGTGTCGGACATGGCCTGCTTGTGGAGCGGTGCAGGTT TCTGGAAGCTGCGGGGTGCGCGTCGGTCTGCATGAACACGTGCAAGGCAA GGAGAAGAATCGTCAATTGTAGAATATCGGGGCCGCATTCAATGATTCTC TCTCTCGTAACGTTGTCCCTTGTTCTCAACGTCCAACAGCGCATTCGGGT CGTAAATGAAGCTAGAGGCTCTTTCTGGCAGGTGTCCCAGCGCCACTGTG CGCATGATTAGTGTGTGTGTGTTTGCGCTTCTCTCATTCAGCTATAACAT GTGGATGCACTTGCAGCGTTCTTCCTGTTCAGCTTCCCCGCGCTAATTCG GCACGCTGGGAGTGCTTCGTTTCAGAACCTCGTGTCTTGCTTTCTTGCGA TTGAGTTATTTGTTTCACATACATGTTGTGTGGTTGAACCTGCTATGCCG TTTTTCTGTCCACGTTTTACTAGGTGCCGACGGAAGAGTTCTTCGCGAAG GACATGGGATTGGCACTGGAGATGACGCCGAATTACGAGGATTTCAGTTG CCAGGTACGAAGGCGTAGCCATGACGTAATCTCTTTTAGGATTGGCAGCA AGGACGCGGCGTACAATACACGAGCGAGGTCTTGAACGTGCCGTCGTCAG GCGTAGCGTTAGGGTGCGCTGTGTAAGGCATGGCCTTATGTTGTATGACG GGGTCCCTCGTGTGCGAGACGTTTCACACGCGGGTGTATATTGTGATGCC ACGTTATGCCTTTGCGTCGCACACCACGCCGTCCCGTGCTGTTTCTGACA GCAATGGAACACGATTCGAAGGTTGGTGCGCGTTGTTGTCCGTCCGCATG TTCCAGTTTTCGTTCAACAAGACTCCGTTGGCGAGAGACATGGACGAGGC GTTTCGGGTGGCGTGTTTCGAGCAATGCCCGTCGCGCGGAGCGCTGAGGC AGCTGAACCAGCCGGCAGTCGCACGGTGTCATCAAATCGATATCGACGAG GATGGCAGTAGCTAAACGCCTTCTTACGGTTCTGGTTTCGAGCCTATTTT TTATATCTGGAAATACCGTTTCCTCAAAATAGTTCTTTTGGTAGGCCAAG AGTTTCCGTATGACACGGTTCTGAGCAGCTACGATGGAAGGAAAAGGGCG GGTGTACATATTTGGTGCCGTGGTGGGGCAGAGGTCAAAAACGCGGTTTT GGTTGCGGAGAAACAGACACGGCTCGCAGCTTGGGCAGATGGCGGATCCT TGCTTTAGAGTTACTTGGTCTTGCTTTAGAATTCCTTGGTGCGTAGTTTA CACATGTGGGGAGGTTGGCATAGAGAACAGAGGTGTAGACCATAGAGAGA AAAGAAAAGAATCTTTACCTGGCTTAGACTACACAAGAACCAAACTCAAA TTTTTTCACGACAGCTCACGGGGTGGAGGCACCCTGATATCTATCATGCA TGCAACTAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1999:7030..11189+

>mRNA_Ecto-sp13_S_contig1999.6498.1 ID=mRNA_Ecto-sp13_S_contig1999.6498.1|Name=mRNA_Ecto-sp13_S_contig1999.6498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:7030..11189+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTCAGGAGCTATTGCAGTTCTTGCGTTAGTCCGCGCTGTGCTGTT
GGTACCGAGCGTCACCGCCTACATCCCAACATCAACATCAACATCGAAAT
CAGCCTGGGTTGCGCCGCCGCATCGATGTAGCACGCGATGTCGAGCCCGG
TCTTCGTCCACGATCGGGGACAGCACTGCTTCGGACCCTGTCGGAGGTGC
CGGTATCGAGCCTGCCGACGCAGCAAAACCTTCACTGAAGGTAATCCGAG
GTCGCGCAGGGCCTGCAGACGCGACGCCCACGTACGACGACACTCGACCG
TTGGATCGGATACTACTTGGCCTGTTTCGGTCAAAGCTGGCGGAAGAGGT
CGGGGGGGATGGCGATGCCTTCGAGCCTGGCTACGACGGTCTGATGGACA
TGATCAAGGTGTTGAACGAGAAGTTCCCTTCGAAGCGGAAGACGCAGGAG
GCGTCCAGGCGAGTATTGAAGTCCCTCTTCCCTTCTTGGCTGCCGGCAAG
CTTCGCGGTGATGTTCTCGAAGCCGTTCCCGGCCTTCTCTTCGCGCTTGA
ACGCCTGGGTGACCCTCGTCGCGTCTCAGTGGCTCATGGGGCCATCGAAG
CTCAACGATATCGAGATCGATGACGGGACTGTGGGTGTCGGACATGGCCT
GCTTGTGGAGCGGTGCAGGTTTCTGGAAGCTGCGGGGTGCGCGTCGGTCT
GCATGAACACGTGCAAGGCAAGGAGAAGAATCGTGCCGACGGAAGAGTTC
TTCGCGAAGGACATGGGATTGGCACTGGAGATGACGCCGAATTACGAGGA
TTTCAGTTGCCAGCAATGGAACACGATTCGAAGGTTGGTGCGCGTTGTTG
TCCGTCCGCATGTTCCAGTTTTCGTTCAACAAGACTCCGTTGGCGAGAGA
CATGGACGAGGCGTTTCGGGTGGCGTGTTTCGAGCAATGCCCGTCGCGCG
GAGCGCTGAGGCAGCTGAACCAGCCGGCAGTCGCACGGTGTCATCAAATC
GATATCGACGAGGATGGCAGTAG
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