mRNA_Ecto-sp13_S_contig19910.6477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19910.6477.1
Unique NamemRNA_Ecto-sp13_S_contig19910.6477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19910.6477.1 vs. uniprot
Match: D7G039_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G039_ECTSI)

HSP 1 Score: 530 bits (1364), Expect = 8.380e-188
Identity = 287/335 (85.67%), Postives = 308/335 (91.94%), Query Frame = 1 
Query:    1 MPATRATFTSTFKITTSATLAMRLASVNNGRTIPNKRMRNEPDGDDLAFDLEAIRPCKRHRIPHYTEADEELLVSILVHEYENSVMDSPCPQAEQQHRHTTLDDDALYAVMKEQEASIAALTARAKLYAQQVATASDELQKAIAKAVEQEAIADKARAKRHDRAMEYVGASAIYEGSQLYDEPCREQCRKRARQERKPMPSSNLQQASKDDIYELIWLQKQSHLQEARKTFEEEQRTLRTRKAERDQLAREHDKAETVASAALESLGKRVTQAEVDAFDSLLEFKQAYADTPCDSSRINTLWAVCDVMDELMDEPSPQQSKSVGRRKTKRTRSSR 1005
            MPAT ATFTSTFKITTSATLAMRLASVNNGRTIPNKRMRNE DGDDLAFDLEA RPCKRHRI +YTEA+E+LLVSILV  YEN+V DSPCPQAEQQH+HTT  D+ALYA MKE EAS AAL ARAK+YAQQVA AS++LQKAIA+A EQEAIADKARA RHDRAM+YVGASAIYEGSQLYDEPCREQC+KRARQERKPMP S+LQQAS+DDIYELIWLQ+QSHLQEARK FE EQ+TL T+KAERDQLAREHDKAET ASAALESL KR+ QAEVDAFDSLLEFKQAYADTPCDSSR NTLWAVCDV+DEL+D PSPQQ KS GRR+TKRTRSSR
Sbjct:    1 MPATTATFTSTFKITTSATLAMRLASVNNGRTIPNKRMRNELDGDDLAFDLEANRPCKRHRIQYYTEAEEDLLVSILVQGYENAVKDSPCPQAEQQHQHTTPKDEALYAAMKEHEASTAALAARAKVYAQQVAAASEDLQKAIAEAREQEAIADKARANRHDRAMQYVGASAIYEGSQLYDEPCREQCKKRARQERKPMPFSDLQQASEDDIYELIWLQRQSHLQEARKNFEAEQKTLLTKKAERDQLAREHDKAETAASAALESLRKRMKQAEVDAFDSLLEFKQAYADTPCDSSRFNTLWAVCDVIDELVDGPSPQQRKSAGRRRTKRTRSSR 335
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BLAST of mRNA_Ecto-sp13_S_contig19910.6477.1 vs. uniprot
Match: A0A6H5K3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 5.760e-43
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:  706 RTLRTRKAERDQLAREHDKAETVASAALESLGKRVTQAEVDAFDSLLEFKQAYADTPCDSSRINTLWAVCDVMDELMDEPSPQQSKSVGRRKTKRTRSS 1002
            +TL T++AERDQLAREHDKAET ASAALESLGKRVTQAEVDAFDSL+ FK+A ADTPCD SR+ TLWAVCDV+DELMDEPSPQ SK  GRR+TKRTRSS
Sbjct:    6 KTLHTKRAERDQLAREHDKAETAASAALESLGKRVTQAEVDAFDSLVGFKEACADTPCDCSRLKTLWAVCDVIDELMDEPSPQ-SKRAGRRRTKRTRSS 103
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BLAST of mRNA_Ecto-sp13_S_contig19910.6477.1 vs. uniprot
Match: A0A6H5K6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.440e-26
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:  202 ADEELLVSILVHEYENSVMDSPCPQAEQQHRHTTLDDDALYAVMKEQEASIAALTARAKLYAQQVATASDELQKAIAKAVEQE 450
            ADEELLVSIL  EYENSVMDSPC QAEQQHRHTTL DDALY  MKEQEAS AAL ARAK YAQ+VA AS+ LQKAIA+A EQE
Sbjct:    6 ADEELLVSILPQEYENSVMDSPCRQAEQQHRHTTLGDDALYTAMKEQEASTAALIARAKAYAQEVAAASENLQKAIAEAREQE 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19910.6477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G039_ECTSI8.380e-18885.67Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5K3X7_9PHAE5.760e-4382.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6A7_9PHAE1.440e-2681.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19910contigEcto-sp13_S_contig19910:567..2698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categoryother localisation
Exons3
Cds size1008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.8716977-CDS-Ecto-sp13_S_contig19910:566..7671681463003.8716977-CDS-Ecto-sp13_S_contig19910:566..767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19910 567..767 +
1681463003.8848372-CDS-Ecto-sp13_S_contig19910:1421..21741681463003.8848372-CDS-Ecto-sp13_S_contig19910:1421..2174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19910 1422..2174 +
1681463003.894269-CDS-Ecto-sp13_S_contig19910:2644..26981681463003.894269-CDS-Ecto-sp13_S_contig19910:2644..2698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19910 2645..2698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19910.6477.1prot_Ecto-sp13_S_contig19910.6477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19910 567..2698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19910.6477.1

>prot_Ecto-sp13_S_contig19910.6477.1 ID=prot_Ecto-sp13_S_contig19910.6477.1|Name=mRNA_Ecto-sp13_S_contig19910.6477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp
MPATRATFTSTFKITTSATLAMRLASVNNGRTIPNKRMRNEPDGDDLAFD
LEAIRPCKRHRIPHYTEADEELLVSILVHEYENSVMDSPCPQAEQQHRHT
TLDDDALYAVMKEQEASIAALTARAKLYAQQVATASDELQKAIAKAVEQE
AIADKARAKRHDRAMEYVGASAIYEGSQLYDEPCREQCRKRARQERKPMP
SSNLQQASKDDIYELIWLQKQSHLQEARKTFEEEQRTLRTRKAERDQLAR
EHDKAETVASAALESLGKRVTQAEVDAFDSLLEFKQAYADTPCDSSRINT
LWAVCDVMDELMDEPSPQQSKSVGRRKTKRTRSSR*
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mRNA from alignment at Ecto-sp13_S_contig19910:567..2698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19910.6477.1 ID=mRNA_Ecto-sp13_S_contig19910.6477.1|Name=mRNA_Ecto-sp13_S_contig19910.6477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19910:567..2698+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGCTACTAGGGCCACTTTCACCTCCACCTTCAAGATCACCACAAG
CGCCACCTTAGCCATGCGCCTGGCCTCTGTCAACAACGGCCGCACCATCC
CAAACAAGCGGATGAGGAACGAGCCGGATGGGGATGACCTCGCCTTCGAC
CTCGAGGCCATCCGGCCGTGCAAGAGGCACCGGATCCCGCACTATACCGA
GGTGAGATCCCACTGCCGCTGTAGGTTACTGTTGATCTTTCCCCCTCGTG
ACAGACTTGGTTTGGCTGCTGGCCCATGTGGTTGATTCTGGGGACGGATG
GCTGGCACTCTTGGAGAGATGCATGACACAAGGATTCGTCGGGGGTTGAA
GGGTTGGCTACGAGGAGCGACCAGCAGCTGTTGAAGTCACACGCAGCGCG
GAGGAAACCACTCATCATAGCCTCCTGTCGTACCACACGGCTACCGAGTA
AACCCCACACTCGCGCTGGCCCACTGCTGTCCCTCACTTATGATTGCCGC
GTGTCCATCATTGGTGCCCGCATAAAAACACCCATGTCCCCCGGAACCAT
CAAATTGCTATCGTTCATATCCGGGCTCTCCCCTTTTCCCACAATCCTCC
AAGCAGTCCACACGCGCATGACTGAATGCGAAACACACCAACCTCCTTCC
ACGAATGAGTCGGTTGGAGCAATCGGGATTTTATTTTCCGGTCCTTGAAA
TTGAGCCACAACCACGCACAGCCTCGCCATCAACGCGCATGCATTGCACA
TACCACCGTGTGACCGATCTGCACCGCACACAACCTCGATCTTCAGCCTC
GAACTGACCCCATACCCCTCCCGGATCTGTGTCACTGTTCACGCCCGATC
TGCAGGCGGATGAGGAACTGCTGGTGTCCATTCTCGTCCACGAGTACGAG
AACTCGGTGATGGACAGCCCGTGCCCTCAGGCGGAGCAGCAGCACCGACA
CACGACACTCGACGACGACGCCCTGTACGCGGTCATGAAGGAGCAGGAAG
CCTCTATCGCCGCCCTCACCGCCAGGGCCAAACTATACGCGCAGCAAGTC
GCCACCGCATCGGACGAGCTTCAGAAGGCGATCGCCAAGGCCGTCGAGCA
GGAGGCCATCGCGGACAAGGCGCGAGCCAAGAGGCATGACCGCGCTATGG
AGTACGTCGGTGCGTCCGCCATCTACGAGGGATCCCAGCTTTATGACGAA
CCCTGCCGGGAGCAGTGCAGGAAGCGGGCCAGGCAGGAGCGGAAGCCGAT
GCCCTCCAGCAACTTACAGCAGGCCTCGAAGGATGACATCTACGAGTTGA
TTTGGCTCCAGAAGCAGTCGCACCTGCAGGAGGCCAGGAAAACCTTCGAA
GAAGAACAGAGGACCCTCCGCACGAGGAAGGCGGAGCGGGACCAGCTCGC
CCGCGAGCACGACAAGGCGGAGACAGTGGCATCCGCAGCGCTGGAGTCCC
TCGGAAAAAGAGTGACGCAGGCCGAGGTGGACGCGTTTGACTCCCTGCTG
GAATTCAAGCAAGCCTACGCCGATACTCCCTGCGACTCTTCGCGGATCAA
CACCTTGTGGGCGGTCTGCGATGTGATGGACGAGCTGATGGACGAGCCCT
CCCCGCAGGTGATTGTTCTTCGCGTGCTGGTGCTTGGCCTTCTGTGTGCA
GTCGCTACCTCTTGTCTTACGCATTATCAACTACTCGTGTACTGTAGATG
GATAGATAGGCCTTTCTTGTCTTCATGGTCAAGTTCCGTTTGTTGTACCT
GAAGAACCGATGTGACTCTTGTTTAAGTTTGCGAGAACTATGCCATGGAA
AACGGTACAGCACGTTTTGCAGGCCGTGCGGTCCGCTACTCTTCGTCCCA
CACTTTGGTGCTGGATGCTTTGGGTTGCCGCTGCAATAGAGTCAGTCGTG
TTCTTCTTGTGCATGCCGTACCCGCTCATGCGCTTCTCTCCACCATCGCA
CCTTCTTCGCTCATATCGGCCAGCGTGATGCAGAACTCGTTCGCTCTGTC
ATACATGCGACTATTCACTGTTATTCACCAGGCTGGTTCTCCTTGAAAGC
CCCCCCCCATACTGCTTTTCTGCTACAGCAGAGCAAGAGTGTGGGTCGCA
GAAAGACCAAGCGGACGAGGTCCTCCCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19910:567..2698+

>mRNA_Ecto-sp13_S_contig19910.6477.1 ID=mRNA_Ecto-sp13_S_contig19910.6477.1|Name=mRNA_Ecto-sp13_S_contig19910.6477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19910:567..2698+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGCTACTAGGGCCACTTTCACCTCCACCTTCAAGATCACCACAAG
CGCCACCTTAGCCATGCGCCTGGCCTCTGTCAACAACGGCCGCACCATCC
CAAACAAGCGGATGAGGAACGAGCCGGATGGGGATGACCTCGCCTTCGAC
CTCGAGGCCATCCGGCCGTGCAAGAGGCACCGGATCCCGCACTATACCGA
GGCGGATGAGGAACTGCTGGTGTCCATTCTCGTCCACGAGTACGAGAACT
CGGTGATGGACAGCCCGTGCCCTCAGGCGGAGCAGCAGCACCGACACACG
ACACTCGACGACGACGCCCTGTACGCGGTCATGAAGGAGCAGGAAGCCTC
TATCGCCGCCCTCACCGCCAGGGCCAAACTATACGCGCAGCAAGTCGCCA
CCGCATCGGACGAGCTTCAGAAGGCGATCGCCAAGGCCGTCGAGCAGGAG
GCCATCGCGGACAAGGCGCGAGCCAAGAGGCATGACCGCGCTATGGAGTA
CGTCGGTGCGTCCGCCATCTACGAGGGATCCCAGCTTTATGACGAACCCT
GCCGGGAGCAGTGCAGGAAGCGGGCCAGGCAGGAGCGGAAGCCGATGCCC
TCCAGCAACTTACAGCAGGCCTCGAAGGATGACATCTACGAGTTGATTTG
GCTCCAGAAGCAGTCGCACCTGCAGGAGGCCAGGAAAACCTTCGAAGAAG
AACAGAGGACCCTCCGCACGAGGAAGGCGGAGCGGGACCAGCTCGCCCGC
GAGCACGACAAGGCGGAGACAGTGGCATCCGCAGCGCTGGAGTCCCTCGG
AAAAAGAGTGACGCAGGCCGAGGTGGACGCGTTTGACTCCCTGCTGGAAT
TCAAGCAAGCCTACGCCGATACTCCCTGCGACTCTTCGCGGATCAACACC
TTGTGGGCGGTCTGCGATGTGATGGACGAGCTGATGGACGAGCCCTCCCC
GCAGCAGAGCAAGAGTGTGGGTCGCAGAAAGACCAAGCGGACGAGGTCCT
CCCGCTGA
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