mRNA_Ecto-sp13_S_contig19909.6474.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19909.6474.1
Unique NamemRNA_Ecto-sp13_S_contig19909.6474.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: D8LNV9_ECTSI (Response receiver n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV9_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 3.420e-45
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 3 
Query:  228 GRGGDRGLSGSPSRRESASSTLPTANMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRIV 509
            G GGDRGLS SPSRRESASSTLPTANM VLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRIV
Sbjct:  234 GGGGDRGLSESPSRRESASSTLPTANMAVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRIV 327
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A6H5K9C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C6_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.060e-43
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 3 
Query:  240 DRGLSGSPSRRESASSTLPTANMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRIV 509
            DRGLSGSPSRRESASSTLPTANM VLVVEDSVISSKLAI+KLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLR+V
Sbjct:  233 DRGLSGSPSRRESASSTLPTANMTVLVVEDSVISSKLAIQKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRVV 322
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A7S3URR6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URR6_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 1.280e-12
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 3 
Query:  312 VLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELL 500
            VL+V+DS ISSKLA+RKL +LG  T+  ENG+ AL L+R  P    LVL D++MPVMDG+ELL
Sbjct:   28 VLIVDDSNISSKLALRKLVSLGYDTMHAENGKVALQLLRRFPGDFDLVLLDIVMPVMDGVELL 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A835ZEX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.830e-11
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 3 
Query:  282 SSTLPTANMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRI 506
            SST+    + +LVV+DS ISSKLA+RKL +LG  T+  +NG  AL+++R   + + LVL D++MPVMDG+ELL I
Sbjct:   92 SSTVGATRITILVVDDSNISSKLAVRKLASLGHRTVHADNGLNALEMLRSGQE-VDLVLLDIVMPVMDGVELLTI 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A0P9EYV0_9CHLR (Response regulatory domain-containing protein (Fragment) n=1 Tax=Kouleothrix aurantiaca TaxID=186479 RepID=A0A0P9EYV0_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 9.270e-8
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:  312 VLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELL 500
            VL+V+D++++ KL  R L  LG  T +  +G AAL+L+R +PD   LVL DV+MP +DG E+L
Sbjct:    4 VLIVDDNLVNRKLLARALADLGHRTSAAADGEAALELLRAEPDTFDLVLLDVLMPRLDGYEVL 66
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A4P7BCF8_9BURK (Histidine kinase n=2 Tax=Massilia plicata TaxID=321984 RepID=A0A4P7BCF8_9BURK)

HSP 1 Score: 60.5 bits (145), Expect = 1.490e-7
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 3 
Query:  294 PTANMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRIV 509
            P A M VL+ ED+ I+  +A+  LR  G      +NGRAA+D +R DP R ++VL DV MP +DG++  RIV
Sbjct: 1277 PMAGMHVLLAEDNPINQTVAVTMLRYAGAEVTVADNGRAAVDALRRDPGRYAVVLMDVQMPELDGLQAARIV 1348
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A1H0MS43_9BURK (Histidine kinase n=1 Tax=Rhodoferax sp. OV413 TaxID=1855285 RepID=A0A1H0MS43_9BURK)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-7
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 3 
Query:  267 RRESASSTLPTA----------NMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLR 503
            RR SA++ LP A           + VLVV+DS I+ ++A R L   G +    E+G+AALD ++  PD + LVL DV MPVMDGIE  R
Sbjct: 1100 RRRSAAAGLPAALRQVSSPSLAGVRVLVVDDSEINREVAQRILSDQGATVSLAEHGQAALDWLKAQPDAVDLVLMDVQMPVMDGIEATR 1188
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A150PR06_SORCE (Response regulatory domain-containing protein n=5 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PR06_SORCE)

HSP 1 Score: 56.6 bits (135), Expect = 2.940e-7
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 3 
Query:  288 TLPTANMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIE 494
            T+   N  +L+V+D     +     L   G    SV NGR ALD +RGDP  ISLVL D++MPVMDG +
Sbjct:    2 TMSRPNKCILIVDDDAAIRQTLSELLEEEGYLVASVANGREALDYLRGDPSSISLVLLDLMMPVMDGFQ 70
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A521TAK2_9BACT (Response regulator (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A521TAK2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 8.690e-7
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 3 
Query:  270 RESASSTLPTANMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLR 503
            + +A  T    +  VLVVED+     L +  LRA G + ++ ENGR A+ L    PDRI L+L DVIMP M G EL+ 
Sbjct:   85 KPAAVKTSQAGDETVLVVEDNSAVRNLVVNVLRANGYNVLTAENGREAIQLAAARPDRIDLLLTDVIMPEMGGKELVE 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Match: A0A317V6C6_9EURO (Uncharacterized protein n=1 Tax=Aspergillus heteromorphus CBS 117.55 TaxID=1448321 RepID=A0A317V6C6_9EURO)

HSP 1 Score: 58.2 bits (139), Expect = 9.270e-7
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 3 
Query:  234 GGDRGLSGSPSRRESASST--------LPTANMVVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRIV 509
            GG+ G+S   SR   + S+         P     VL+V+D+ I+ KL +  ++ LGC   + +NG+ ALD  + +P  I +VL D+ MPVMDG+E  R++
Sbjct: 1098 GGNSGVSAGASRTSVSHSSGEQSPPPEQPRQPTTVLLVDDNEINLKLLVAFMKKLGCKYATAQNGQEALDCFKENPHDIGVVLMDISMPVMDGLESTRLI 1197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19909.6474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNV9_ECTSI3.420e-4596.81Response receiver n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5K9C6_9PHAE1.060e-4396.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3URR6_HETAK1.280e-1260.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZEX5_9STRA1.830e-1152.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0P9EYV0_9CHLR9.270e-847.62Response regulatory domain-containing protein (Fra... [more]
A0A4P7BCF8_9BURK1.490e-745.83Histidine kinase n=2 Tax=Massilia plicata TaxID=32... [more]
A0A1H0MS43_9BURK1.500e-744.94Histidine kinase n=1 Tax=Rhodoferax sp. OV413 TaxI... [more]
A0A150PR06_SORCE2.940e-744.93Response regulatory domain-containing protein n=5 ... [more]
A0A521TAK2_9BACT8.690e-743.59Response regulator (Fragment) n=1 Tax=Acidobacteri... [more]
A0A317V6C6_9EURO9.270e-736.00Uncharacterized protein n=1 Tax=Aspergillus hetero... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19909contigEcto-sp13_S_contig19909:409..3212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size512
Hectar predicted targeting categoryother localisation
Exons4
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.654045-CDS-Ecto-sp13_S_contig19909:408..5431681463003.654045-CDS-Ecto-sp13_S_contig19909:408..543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19909 409..543 -
1681463003.6651962-CDS-Ecto-sp13_S_contig19909:1451..15281681463003.6651962-CDS-Ecto-sp13_S_contig19909:1451..1528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19909 1452..1528 -
1681463003.675081-CDS-Ecto-sp13_S_contig19909:2461..26571681463003.675081-CDS-Ecto-sp13_S_contig19909:2461..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19909 2462..2657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.6947756-UTR-Ecto-sp13_S_contig19909:2657..26851681463003.6947756-UTR-Ecto-sp13_S_contig19909:2657..2685Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19909 2658..2685 -
1681463003.7053533-UTR-Ecto-sp13_S_contig19909:3137..32121681463003.7053533-UTR-Ecto-sp13_S_contig19909:3137..3212Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19909 3138..3212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19909.6474.1prot_Ecto-sp13_S_contig19909.6474.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19909 409..2657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19909.6474.1

>prot_Ecto-sp13_S_contig19909.6474.1 ID=prot_Ecto-sp13_S_contig19909.6474.1|Name=mRNA_Ecto-sp13_S_contig19909.6474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MQMRFLHPGRDLRQRFHRHQNYILQRQHLLLGVLPPGGAGAGAGGGPGVV
GEPFPKRISIVDPSHGKHGCLGRGRLCDFEQAGHPEAPGVRVLDDKRGER
PCGPGLDAGRPGPNKPRSRRRHHARHGRHRALAHRK
back to top

mRNA from alignment at Ecto-sp13_S_contig19909:409..3212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19909.6474.1 ID=mRNA_Ecto-sp13_S_contig19909.6474.1|Name=mRNA_Ecto-sp13_S_contig19909.6474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19909:409..3212- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGGCGGGGGCGGCGGAAGCTCCGCCACCCTCGGGGGGGGGAGGCCA
CAGCCCGCTGAGAGACTTGCCGCCGGTAAGCCGAGAATCGCTGGCTGTTG
AGAGAGAGAGACAAATAACACTGGATGGATGCTGAGAGGAACACAGCGAG
ACAGAGAGAGAAAGGAGAGTCACGAAAAGTTGGGCTGAGACTTACGGAGG
CGGGGGGCGACGCGGGTGGTAATGCTGGCAAGTATGACACCCTCCTTCTC
CCCATTCCCTGGTTGACTGTGTCCAAGAATAGGGGAGAACAGTACTCCCG
CCGCCGGTTCGTGTTTTGTTTCTCGGCCCCGTTCAATGTTTGCGAGAGCA
TGACTGTACGCTGTACGGCGTTTCAAACCGACTTTACAAGGTGTTTCGAC
AAGGCGTTTCGAAGCCGCCGTTTCTTCGTGGTGGAATTTCGTCTCGCCCC
CGGACAAGAAGTCCCCTCCGTCGCCTTTTCTCACCCCCCCCCCTCGCTCA
TGTTGAAGATCATCTTTTGTTTCGCAGGGGGTCGACGGGCCGGCCGGCTT
TGAGCATGCAGATGCGTTTCCTTCACCCGGGGCGGGATTTGCGCCAGAGG
TTCCACCGCCACCAGAACTACATCCTGCAGAGACAACACTTACTCTTGGG
AGTGCTCCCACCGGGGGGGGCGGGGGCGGGGGCGGGGGGGGGACCGGGGG
TTGTCGGGGAGCCCTTCCCGAAGAGAATCAGCATCGTCGACCCTTCCCAC
GGTGAGAGGGCGATTTTTTCTCGATTTTGGATGGATGTCTGCTGGATATG
CCGCAATTGACGTCAGGTCACACCCCCTGGGCCGGCTTTGAAAGCTCGAC
TACTCTTCTCACGACGAAGAGAGCGTCACTCTTTTCACGCTGAAGACGGT
ATCACTCTTTTCACGACGTAGAGGGTGGCGCATCTATGGTGCTTTGTCGT
AGAGTCCGTTATGAGCCGTTATTGAACGCCGCCATTTTCAGCACCACCAC
CCTTTCTGGTGCGAATCAATCAAGCTTTGAAAACCGGTCAAGGGGGTGTG
ATATGTTACGTCACCTGTGGTAAATCTCCGGCACAGTATGCGGAAGGATG
GGGGTGATATGATGTAAGTTTCATCTGCTCATGGGGCTTTGTCACCCGCA
CGTGGGAGCTTGCTTGTTGTGTCGGCCCTTTCCCATGCATTTGTCGGAGC
AGGTGGTGGGTGTGGTTCCTCGGACTCATGCATTGGGCTGCATTGAACAA
GAGCATTGGAATGAGGGGGGTTGCCAAAGGGGCCCGTGATATCATAGAAA
CCGGAAGAGCACCCTTTGTGCCTCAAGCCCGGGAATACGTGCGTAGCCCT
CAGGCCATTTCGGGAGTAAAATCGAGCGCTGGGTGTCTCCACCAGATCTC
CTTGTAGGGTGGAGTTGGCAAGACGGCATAAAATTGAAAAAATCGAGAGA
GGAGAGAATTGTGCCAGAGTGCCACAGTCCGACTGCTGCGAGCGGACGTT
AGACTTTTCGTCATTCTCGGTGCGATGGGATTGCTGTGTATTGCGGTCGC
GCTGTGATACGCTCACGTCTTTGAACCGTTCGTTGTTCAACTAGTACGTG
TGCTGTTGGCCGCCGCAAGCGAAGGAAAAACTTGCTTGGCTCTTGCTTAA
AACCGTTATCCTTGCCGCCGTTGGGTCAACCCAGGCAAACATGGTTGTCT
TGGTCGTGGAAGACTCTGTGATTTCGAGCAAGCTGGCCATCCGGAAGCTC
CGGGCGTTAGGGTGAGGGTTACCTGCAGGCGTCTTCGGTGCGGGGAGGAG
GAAGGATCAGGGTGCTCTCGCGTGTGGTGTGTGTCGCTTTGACTGCCATG
GGCTGCGCTTGTAGCCGGATGCCCGAGGAAAGGACATCACTCTGAGCGGA
TGCTATTGAAATGGAAGCCATGTCTGGGTGTGCGTGCGTGTGTGATTTTC
TGCTGCCGCGTCTTGTGCGTTGCGTCTACAATAGAGAACCCATGGGGCTT
GTATCGCGTGGCAAGGAATTCGTTTGTCCAGACAGATGACGTTGACGCGA
GATACCGCATGTGTTGATTAACAAACTCTTTGTGTTTATGGCGAGACACT
ATCCGGGTGCAAAGAAACCATGAGCATTGGTGTGATCCGGTAGTGTGTTG
CCACCCGCCCCTTTCTTAGTCTGGACGCCGATTCTCCCGACATGTACCGT
AAGAGACGGAGAGACGGCACTCCTCCTAGACGTATTTTCAAAGCTCGATT
ACTCCACGACCAAGATTGTATGTACCGTACCATATACCGTACCGTGGTAT
TCCGTAAGAGTCGGAGAGATGGCACCCCCCCTAGTCCGATTTTCAAAGCT
CGATTGCTCCACAACCAGGAGGGTGCCGAAAGACCCCGATGCGTCGACCG
AGGAGACCGCGACGAGATGTTTCCACAACCACCACTTTCGGAGTTGGCAC
AAGCTAGGTTGTGGAGCAATCGAGGTTTGAAAGTCTGTCTAGCGGGGGTG
CCATCTCTCCGCCTCTTACGGTACGTGCGAGCGGGTTGTCTAGCTGCACG
AGGTGGAGAGAGAATCCCGGCGAGACCGGGTTGTTTTTTGTTTGCTTGCG
CCGCCCGCCCCGCGACAGTAGAATCGAAGGACATTCTTTTTTTTTTCCTG
CGTCTTTTCTTGGCGCCAGGTGCTCGACGATAAGCGTGGAGAACGGCCGT
GCGGCCCTGGACTTGATGCGGGGCGACCCGGACCGAATAAGCCTCGTTCT
CGCCGACGTCATCATGCCCGTCATGGACGGCATCGAGCTCTTGCGCATCG
TAAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19909:409..3212-

>mRNA_Ecto-sp13_S_contig19909.6474.1 ID=mRNA_Ecto-sp13_S_contig19909.6474.1|Name=mRNA_Ecto-sp13_S_contig19909.6474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19909:409..3212- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGATGCGTTTCCTTCACCCGGGGCGGGATTTGCGCCAGAGGTTCCA
CCGCCACCAGAACTACATCCTGCAGAGACAACACTTACTCTTGGGAGTGC
TCCCACCGGGGGGGGCGGGGGCGGGGGCGGGGGGGGGACCGGGGGTTGTC
GGGGAGCCCTTCCCGAAGAGAATCAGCATCGTCGACCCTTCCCACGGCAA
ACATGGTTGTCTTGGTCGTGGAAGACTCTGTGATTTCGAGCAAGCTGGCC
ATCCGGAAGCTCCGGGCGTTAGGGTGCTCGACGATAAGCGTGGAGAACGG
CCGTGCGGCCCTGGACTTGATGCGGGGCGACCCGGACCGAATAAGCCTCG
TTCTCGCCGACGTCATCATGCCCGTCATGGACGGCATCGAGCTCTTGCGC
ATCGTAAA
back to top