mRNA_Ecto-sp13_S_contig19902.6473.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19902.6473.1
Unique NamemRNA_Ecto-sp13_S_contig19902.6473.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19902.6473.1 vs. uniprot
Match: A0A6H5JL89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL89_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.270e-25
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 TAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLGHGHQHGR 147
            TAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLG GHQHGR
Sbjct:   46 TAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLGQGHQHGR 94
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BLAST of mRNA_Ecto-sp13_S_contig19902.6473.1 vs. uniprot
Match: D7FQD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.140e-25
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 TAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLGHGHQHGR 147
            TAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLG GH HGR
Sbjct:   12 TAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLGQGHPHGR 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19902.6473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL89_9PHAE1.270e-2597.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQD5_ECTSI4.140e-2595.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19902contigEcto-sp13_S_contig19902:833..3216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_006520.1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.612581-CDS-Ecto-sp13_S_contig19902:832..9461681463003.612581-CDS-Ecto-sp13_S_contig19902:832..946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19902 833..946 -
1681463003.6237993-CDS-Ecto-sp13_S_contig19902:3180..32161681463003.6237993-CDS-Ecto-sp13_S_contig19902:3180..3216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19902 3181..3216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19902.6473.1prot_Ecto-sp13_S_contig19902.6473.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19902 833..3216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19902.6473.1

>prot_Ecto-sp13_S_contig19902.6473.1 ID=prot_Ecto-sp13_S_contig19902.6473.1|Name=mRNA_Ecto-sp13_S_contig19902.6473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
TAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLGHGHQHGR*
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mRNA from alignment at Ecto-sp13_S_contig19902:833..3216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19902.6473.1 ID=mRNA_Ecto-sp13_S_contig19902.6473.1|Name=mRNA_Ecto-sp13_S_contig19902.6473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19902:833..3216- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCCGAGAAGCACCTCGCGGAGGATGCCAAGAAGGTACGTGCGTTGCA
TGGGACACCATTCGAGAGAAAAAAGAGCTACACAGTAGTCTTATATATAC
ACGGTGCGCTCGACACATGAAACCCCGGGCGGCATTGTCCGATGCTGTAG
AAACTACGCTGCAGAAACAGGTGCTTGATATCAGCTCTGCTTTCACCTTA
AGTCGCGAGAGAAGAGTGCCCCTCAAAAGGCTCTTCATGCCTTATCGTGG
AATTACCCCGTGGGCACGTGAGTCTGCACAGGATTGTCACCAAAGGGTGT
CATTGGTTGGCCTTGCCTTTTCTTCACCGCAACTCCTGAAGAACACCCTC
CATGAGTCCCCTCCATGAAAACCACACCCGCACAGAACCGCGAGCGAAGC
ACATGAGAGCTAGTATGCATACCATACGAAATGCTGTGTCCCCCGATTTT
TTTTTTCTTACCGCTCTACTTTCTTGAGTTCGCCCCGGGGTTGTAAAAAA
TAAAATGTAGGCACACCCGGGGCTTTGAACGAAATATCCATGCATCCATG
CCGGCAACTTTTTTGCTGTTTTCGTTGCTGTTCGTTGTCGTTGCTTTTTG
TTGTTGTTGTTGTTGTTGTTGTTGCTGTTTTTACTGTCCCTATTTTCATT
TCTGGCTATGTAGGAAATAAAGCCCATCCACCGGCGGCCATCCACCATCG
TTGCACCTCATGCACACTCAAGCGCACTTTTCTGTCATGCCAAAAAAATC
CCAGTGCGGTTTCATCACCCTGTCTTCTCTACAGAGGGTTTAAGAGTATA
GTACAAGAATTCTCGCTGTAGTGGTGATGAACAATCTTCTAGCGGGAACG
ACTATTTTGTGTTCGAAACGGCGTTGATTTTCATGACCGACCGTGTTGAT
CTCCGACAACGTCGATGAAGGTTGAACTCTGTCACGACTACGACTGAAAT
ATCGTAGGAGGTAGCGAGCGTGACAGCTCCGCGCTTGTGTGTGTGCTGTT
GTAAACTTCCGGTTCGAGGTGAATTGAAACGATTTTCAGGTGACCTTTGC
AGCCCCCGTGATGAGAGATGTGATGGCGACCCAACATTTTCGCGAACGAT
AGGGAGCACTATGGTTGATAGTGGCATCTGTGGTGAAGTTGCGGACGATC
TAGTCACTTTTGTGTGTTCTCCGACGGCGCATGAGTGGGCCACCCTGAGA
GCTGAACGACGAGGGCTTGTTGCTCTGTTGCCACAGCAACCGCTTGGGAT
AGAGCAGAAACTGTCGAGTTGAATGCGAAACCACGGTGTAGCCTGCTTGC
GGGCGTACGTTCTATTCGTGCCGAGATCCTTTGCTGGTTTCGTGGCATGC
CGCGGTCTTAACCAGGAGTAACAACGGTCCGTTCATTTGGTACGATTTTT
TTCGTATTTGGTACAGGTTGCAACGTCCGTGGAACGGCGCAAGCTTCTCC
AGTTTCCATTTCTTCTGCCTCTTGAAAGCTTTCTAGTAAATGTTGCCTAG
GTCCGACATCGTTCGTCGGTTCCAGCGCGATGGATCTGCGGGAATTTTTG
TGTGCTTCTTTCACCCCGCGGGTGGTTTTTTTCTATGTGCAATGACTGCC
TCATGCACCTTTTTTGTAAACAACCCCGGGGTGCCCTTCCTCACATGAAC
ATTTTTTGGCGGTCGCTGGTACTTTCTCGAAGGATATCGCGACGTATGAG
TGCGAGAACAGTGCACAGACCCAGACATACGCGAGCGTCTTGAAACAAGC
AATATGATGAGTCCCCTACTGCTGTTTGTAGCTCGCCTTGCCCGCAGTAC
TTGTAGTGCTCCGTGGACTGCTGCGTGCAGAGTACCGTTCCTTTCTATCG
GGCTGCTAGGCTCCACCTGGACTGCTTCCAACAAGAGCGGAGCCTTGTTT
CCTAACTTGTGTCGGTGTTTGGCAACTTCCACAACGTTGGACTGGGCTTT
CAACCTTACTTGAAACCGATCACGTGAACTCATGTTTTTTTATCAAAGGG
AAAGCCAGGTATCGCATGACATGATGTTTCAGTAGTGGAGATGGTGTTTG
TGTGATCTGCGCCTATCGGATCAGGTGGTACGGACAGTTGAATGTGTTTG
ATTATATCGTGTACAATTCCCTGCTGGTTGCTTTGTGACACGCAGCTGAC
CTCGCGCATTCCCCTCCCCTCTTGGCCACCCTCCTCCCTTTTCTCTCTGT
CCAACGTGTGGTGTGGTTCGTTGGTGCTCTCTGTGGTGCCGTGCGTGCTG
CGGTGGGTTTACACACCCAGGTGCTGGTCTCGGACATCAAATCGAGCCTG
CGAAGGCTGATGGACGATATTAGTGAAGACAACTGGATGTATGACCCCAT
TGACCTGGGGCACGGGCATCAGCACGGGAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19902:833..3216-

>mRNA_Ecto-sp13_S_contig19902.6473.1 ID=mRNA_Ecto-sp13_S_contig19902.6473.1|Name=mRNA_Ecto-sp13_S_contig19902.6473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19902:833..3216- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCCGAGAAGCACCTCGCGGAGGATGCCAAGAAGGTGCTGGTCTCGGA
CATCAAATCGAGCCTGCGAAGGCTGATGGACGATATTAGTGAAGACAACT
GGATGTATGACCCCATTGACCTGGGGCACGGGCATCAGCACGGGAGATGA
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