mRNA_Ecto-sp13_S_contig19900.6472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19900.6472.1
Unique NamemRNA_Ecto-sp13_S_contig19900.6472.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19900.6472.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.830e-29
Identity = 63/83 (75.90%), Postives = 64/83 (77.11%), Query Frame = -3 
Query:  631 TTGVGAGLRQPPPLPPSFSASGDTGGHRATPAASXXXXXXXXXXXXXXCNGSPPPSLQPAGGGVAPACGGGYFTSSSGIRVRL 879
            TTGVGAGLRQPPPLP  FS SGDTGGHRATPA +              CNGSPPPSLQP GGGVAPACGGGYFTSSSGIRVRL
Sbjct: 1671 TTGVGAGLRQPPPLPSPFSVSGDTGGHRATPATTAAGGSLGRGPATPACNGSPPPSLQPVGGGVAPACGGGYFTSSSGIRVRL 1753
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19900.6472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0D2_9PHAE6.830e-2975.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19900contigEcto-sp13_S_contig19900:2151..3031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size881
Hectar predicted targeting categoryother localisation
Exons1
Cds size576
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.563049-UTR-Ecto-sp13_S_contig19900:2150..21601681463003.563049-UTR-Ecto-sp13_S_contig19900:2150..2160Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19900 2151..2160 +
1681463003.583897-UTR-Ecto-sp13_S_contig19900:2736..30311681463003.583897-UTR-Ecto-sp13_S_contig19900:2736..3031Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19900 2737..3031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.5738752-CDS-Ecto-sp13_S_contig19900:2160..27361681463003.5738752-CDS-Ecto-sp13_S_contig19900:2160..2736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19900 2161..2736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19900.6472.1prot_Ecto-sp13_S_contig19900.6472.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19900 2161..2736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19900.6472.1

>prot_Ecto-sp13_S_contig19900.6472.1 ID=prot_Ecto-sp13_S_contig19900.6472.1|Name=mRNA_Ecto-sp13_S_contig19900.6472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MHDPFDVEKCPPHRPSVTALASRHRVGALSALTKFISPKQTNVVFIHIDS
ITNHRQRALLSYIWPRLPRAWSEKHAPQTPAWSAYNRRGYVMTSFNKADT
DRTHVPPPKVAPCTASCTRRHKENNSARWGVAQKQEANLYPNKKNIKLVQ
RRHAPSKIATQPICQSTKQPISKLIARHPVASSSSSSFLNG*
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mRNA from alignment at Ecto-sp13_S_contig19900:2151..3031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19900.6472.1 ID=mRNA_Ecto-sp13_S_contig19900.6472.1|Name=mRNA_Ecto-sp13_S_contig19900.6472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=881bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19900:2151..3031+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGAGGTTATGCATGACCCCTTTGACGTAGAGAAGTGCCCCCCACACC
GACCATCAGTGACTGCTCTTGCCTCAAGACATCGGGTTGGTGCCCTCTCC
GCTCTGACCAAGTTCATAAGCCCGAAGCAAACAAATGTCGTCTTCATACA
CATCGACAGCATAACAAACCACAGACAACGCGCCCTCCTCAGCTACATCT
GGCCTCGTTTGCCGCGTGCATGGAGTGAAAAGCATGCCCCACAAACGCCC
GCATGGTCCGCCTACAATCGCCGCGGCTACGTCATGACAAGTTTCAACAA
AGCAGATACAGACCGCACACACGTACCCCCACCAAAAGTTGCTCCGTGCA
CTGCAAGCTGCACGCGAAGGCACAAGGAAAACAACAGCGCCCGATGGGGT
GTCGCGCAAAAACAGGAGGCCAACCTGTACCCGAACAAAAAAAACATCAA
GCTCGTCCAAAGACGGCACGCCCCCTCGAAAATTGCCACACAACCCATCT
GTCAATCAACAAAACAACCAATCAGCAAGCTGATTGCGCGCCACCCTGTG
GCCTCATCCTCATCTTCTTCCTTCCTGAACGGTTAGCACTCCCGCCCGGC
GACAACCAGCAGCTCTCCCTGTCCAGTTCAGAGGCGAACCCGAATCCCGC
TGCTCGACGTGAAGTACCCGCCTCCGCAAGCCGGGGCCACGCCACCCCCG
GCCGGCTGAAGCGACGGAGGCGGTGAGCCGTTGCAGGCCGGAGTAGCGGG
TCCACCGCCAATACTGCCACCGGCGGCAGAAGCAGCGGGTGTCGCTCTGT
GCCCACCGGTATCGCCAGAAGCAGAAAACGACGGGGGCAGCGGCGGCGGC
TGTCGCAGGCCGGCACCCACGCCCGTCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19900:2151..3031+

>mRNA_Ecto-sp13_S_contig19900.6472.1 ID=mRNA_Ecto-sp13_S_contig19900.6472.1|Name=mRNA_Ecto-sp13_S_contig19900.6472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19900:2151..3031+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGACCCCTTTGACGTAGAGAAGTGCCCCCCACACCGACCATCAGT
GACTGCTCTTGCCTCAAGACATCGGGTTGGTGCCCTCTCCGCTCTGACCA
AGTTCATAAGCCCGAAGCAAACAAATGTCGTCTTCATACACATCGACAGC
ATAACAAACCACAGACAACGCGCCCTCCTCAGCTACATCTGGCCTCGTTT
GCCGCGTGCATGGAGTGAAAAGCATGCCCCACAAACGCCCGCATGGTCCG
CCTACAATCGCCGCGGCTACGTCATGACAAGTTTCAACAAAGCAGATACA
GACCGCACACACGTACCCCCACCAAAAGTTGCTCCGTGCACTGCAAGCTG
CACGCGAAGGCACAAGGAAAACAACAGCGCCCGATGGGGTGTCGCGCAAA
AACAGGAGGCCAACCTGTACCCGAACAAAAAAAACATCAAGCTCGTCCAA
AGACGGCACGCCCCCTCGAAAATTGCCACACAACCCATCTGTCAATCAAC
AAAACAACCAATCAGCAAGCTGATTGCGCGCCACCCTGTGGCCTCATCCT
CATCTTCTTCCTTCCTGAACGGTTAG
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