mRNA_Ecto-sp13_S_contig19894.6465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A6H5KV38_9PHAE (Exportin-T (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV38_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.830e-47 Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKVGVPPL 282
++DTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNE+FLQLFLGCL STDEQLVRRSCSCILEVVNK P+
Sbjct: 211 IKDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNEQFLQLFLGCLMSTDEQLVRRSCSCILEVVNKKMAHPV 302
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: D7FNT8_ECTSI (Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI) HSP 1 Score: 167 bits (423), Expect = 3.970e-46 Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKVGVPPL 282
++DTMRVSN+VAQICGVIYEVVAAF+TEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK P+
Sbjct: 210 IKDTMRVSNAVAQICGVIYEVVAAFETEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKKMAHPV 301
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A836CAL0_9STRA (Exportin-T n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL0_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.120e-14 Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTD--EQLVRRSCSCILEVVNK 264
++D MR + A + V++ V ++ ++P+LAAFALE+L K IGWIDIA VVN++ LQL CL D +L + + +C+ EVV K
Sbjct: 188 VKDAMRGTGVPADVARVVFTTVTTYRADLPELAAFALESLSKLIGWIDIALVVNDKMLQLLYDCLERADGGPELAQAAAACLEEVVLK 275
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A835PHH6_VANPL (Exportin-T n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PHH6_VANPL) HSP 1 Score: 68.2 bits (165), Expect = 2.700e-11 Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRS--TDEQLVRRSCSCILEVVNK 264
++D MR+ V QI +++++ +++ P LAA L+T+++YIGWIDI V N+ FL LF L S T E L S SC+L +++K
Sbjct: 175 IKDAMRI-QCVPQIVRTWFDIISLYRSTEPALAAATLDTMRRYIGWIDIGLVANDAFLPLFFDLLLSPATPEMLRSASASCVLAMISK 261
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A250XMU3_9CHLO (Exportin-T n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XMU3_9CHLO) HSP 1 Score: 68.2 bits (165), Expect = 2.710e-11 Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK 264
++D+MR +S++ I Y +V ++T+ P LA L+T+Q+Y+ WIDI+ V + +F+ L L L S+D L + C+ EVV+K
Sbjct: 176 IKDSMR-EHSISDIASAWYALVDLYRTKRPALATSVLQTMQRYVPWIDISLVAHPKFVALLLSLLESSDTALAAAAADCLTEVVSK 260
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A1Y1IKH1_KLENI (Exportin-T n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKH1_KLENI) HSP 1 Score: 66.6 bits (161), Expect = 9.390e-11 Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCS--CILEVVNK 264
++D +R + QI Y +V A+K+ P LAA LE +QKY+ W+DI V NERF+ L G L S E R + C+L +V+K
Sbjct: 173 IKDALR-GQCIGQILEACYSLVVAYKSVNPTLAAATLEAVQKYVAWVDIGLVANERFVPLLFGFLASAAEPFKLRGAASDCLLAIVSK 259
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A8J5F3H0_ZINOF (Exportin-T n=6 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3H0_ZINOF) HSP 1 Score: 65.9 bits (159), Expect = 1.750e-10 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRS--TDEQLVRRSCSCILEVVNK 264
++DTMR V QI ++V++ + + P LAAFAL+T+++YI WIDI V N+ F+ LF G + + + +QL S SCIL ++ K
Sbjct: 175 VKDTMR-QQCVPQIARHWFDVLSLYHSSDPSLAAFALDTMRRYITWIDIGLVANDAFVPLFFGLILAPGSTDQLRAASGSCILAIILK 261
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A0D2KJN1_9CHLO (Exportin-T n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KJN1_9CHLO) HSP 1 Score: 63.9 bits (154), Expect = 7.790e-10 Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK 264
++D+MR + + Y++ A + PQLAAF L T +YI WIDI V N+RF+ L L + S L + C++EVV+K
Sbjct: 177 VKDSMR-DRCIGDVAEAWYQLALAHRAARPQLAAFVLATAARYIHWIDIGLVANDRFMPLLLELMESPHSALRAAATDCVIEVVSK 261
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A2V0NUT8_9CHLO (Exportin-T n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NUT8_9CHLO) HSP 1 Score: 63.9 bits (154), Expect = 8.390e-10 Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK 264
L+D+MR +A + YE+ A + PQLAAF L T +Y+ WIDI V N++F+ L L + + L + C++EVV+K
Sbjct: 180 LKDSMR-DRCIADVAEGWYELALAHRASRPQLAAFVLTTAARYVHWIDIGLVANDKFMPLLLELMEAPHSGLRAAATDCVIEVVSK 264
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A6J8DGJ6_MYTCO (Exportin-T n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DGJ6_MYTCO) HSP 1 Score: 63.5 bits (153), Expect = 1.150e-9 Identity = 31/93 (33.33%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRS-CSCILEVVNKVGVPPL 282
++D MR +V Q+ G YE++ ++T P++ L+ + K+I WIDI + N++F+ + L + T L+R S C CI +++NK G+ P+
Sbjct: 202 IKDAMR-EQAVGQLAGTWYEILTTYETSNPEVVCMCLDVIGKFISWIDINLIANDKFVTVLLNFMTLT---LIRESACDCITDILNK-GMDPI 289 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19894.6465.1 >prot_Ecto-sp13_S_contig19894.6465.1 ID=prot_Ecto-sp13_S_contig19894.6465.1|Name=mRNA_Ecto-sp13_S_contig19894.6465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp MRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNback to top mRNA from alignment at Ecto-sp13_S_contig19894:1875..2537- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19894.6465.1 ID=mRNA_Ecto-sp13_S_contig19894.6465.1|Name=mRNA_Ecto-sp13_S_contig19894.6465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19894:1875..2537- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19894:1875..2537- >mRNA_Ecto-sp13_S_contig19894.6465.1 ID=mRNA_Ecto-sp13_S_contig19894.6465.1|Name=mRNA_Ecto-sp13_S_contig19894.6465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19894:1875..2537- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |