mRNA_Ecto-sp13_S_contig19894.6465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19894.6465.1
Unique NamemRNA_Ecto-sp13_S_contig19894.6465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A6H5KV38_9PHAE (Exportin-T (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV38_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.830e-47
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKVGVPPL 282
            ++DTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNE+FLQLFLGCL STDEQLVRRSCSCILEVVNK    P+
Sbjct:  211 IKDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNEQFLQLFLGCLMSTDEQLVRRSCSCILEVVNKKMAHPV 302          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: D7FNT8_ECTSI (Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 3.970e-46
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKVGVPPL 282
            ++DTMRVSN+VAQICGVIYEVVAAF+TEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK    P+
Sbjct:  210 IKDTMRVSNAVAQICGVIYEVVAAFETEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKKMAHPV 301          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A836CAL0_9STRA (Exportin-T n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.120e-14
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTD--EQLVRRSCSCILEVVNK 264
            ++D MR +   A +  V++  V  ++ ++P+LAAFALE+L K IGWIDIA VVN++ LQL   CL   D   +L + + +C+ EVV K
Sbjct:  188 VKDAMRGTGVPADVARVVFTTVTTYRADLPELAAFALESLSKLIGWIDIALVVNDKMLQLLYDCLERADGGPELAQAAAACLEEVVLK 275          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A835PHH6_VANPL (Exportin-T n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PHH6_VANPL)

HSP 1 Score: 68.2 bits (165), Expect = 2.700e-11
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRS--TDEQLVRRSCSCILEVVNK 264
            ++D MR+   V QI    +++++ +++  P LAA  L+T+++YIGWIDI  V N+ FL LF   L S  T E L   S SC+L +++K
Sbjct:  175 IKDAMRI-QCVPQIVRTWFDIISLYRSTEPALAAATLDTMRRYIGWIDIGLVANDAFLPLFFDLLLSPATPEMLRSASASCVLAMISK 261          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A250XMU3_9CHLO (Exportin-T n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XMU3_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 2.710e-11
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK 264
            ++D+MR  +S++ I    Y +V  ++T+ P LA   L+T+Q+Y+ WIDI+ V + +F+ L L  L S+D  L   +  C+ EVV+K
Sbjct:  176 IKDSMR-EHSISDIASAWYALVDLYRTKRPALATSVLQTMQRYVPWIDISLVAHPKFVALLLSLLESSDTALAAAAADCLTEVVSK 260          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A1Y1IKH1_KLENI (Exportin-T n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKH1_KLENI)

HSP 1 Score: 66.6 bits (161), Expect = 9.390e-11
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCS--CILEVVNK 264
            ++D +R    + QI    Y +V A+K+  P LAA  LE +QKY+ W+DI  V NERF+ L  G L S  E    R  +  C+L +V+K
Sbjct:  173 IKDALR-GQCIGQILEACYSLVVAYKSVNPTLAAATLEAVQKYVAWVDIGLVANERFVPLLFGFLASAAEPFKLRGAASDCLLAIVSK 259          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A8J5F3H0_ZINOF (Exportin-T n=6 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3H0_ZINOF)

HSP 1 Score: 65.9 bits (159), Expect = 1.750e-10
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRS--TDEQLVRRSCSCILEVVNK 264
            ++DTMR    V QI    ++V++ + +  P LAAFAL+T+++YI WIDI  V N+ F+ LF G + +  + +QL   S SCIL ++ K
Sbjct:  175 VKDTMR-QQCVPQIARHWFDVLSLYHSSDPSLAAFALDTMRRYITWIDIGLVANDAFVPLFFGLILAPGSTDQLRAASGSCILAIILK 261          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A0D2KJN1_9CHLO (Exportin-T n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KJN1_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 7.790e-10
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK 264
            ++D+MR    +  +    Y++  A +   PQLAAF L T  +YI WIDI  V N+RF+ L L  + S    L   +  C++EVV+K
Sbjct:  177 VKDSMR-DRCIGDVAEAWYQLALAHRAARPQLAAFVLATAARYIHWIDIGLVANDRFMPLLLELMESPHSALRAAATDCVIEVVSK 261          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A2V0NUT8_9CHLO (Exportin-T n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NUT8_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 8.390e-10
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNK 264
            L+D+MR    +A +    YE+  A +   PQLAAF L T  +Y+ WIDI  V N++F+ L L  + +    L   +  C++EVV+K
Sbjct:  180 LKDSMR-DRCIADVAEGWYELALAHRASRPQLAAFVLTTAARYVHWIDIGLVANDKFMPLLLELMEAPHSGLRAAATDCVIEVVSK 264          
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Match: A0A6J8DGJ6_MYTCO (Exportin-T n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DGJ6_MYTCO)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-9
Identity = 31/93 (33.33%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    7 LQDTMRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRS-CSCILEVVNKVGVPPL 282
            ++D MR   +V Q+ G  YE++  ++T  P++    L+ + K+I WIDI  + N++F+ + L  +  T   L+R S C CI +++NK G+ P+
Sbjct:  202 IKDAMR-EQAVGQLAGTWYEILTTYETSNPEVVCMCLDVIGKFISWIDINLIANDKFVTVLLNFMTLT---LIRESACDCITDILNK-GMDPI 289          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19894.6465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV38_9PHAE1.830e-4790.22Exportin-T (Fragment) n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FNT8_ECTSI3.970e-4690.22Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A836CAL0_9STRA1.120e-1443.18Exportin-T n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835PHH6_VANPL2.700e-1139.77Exportin-T n=1 Tax=Vanilla planifolia TaxID=51239 ... [more]
A0A250XMU3_9CHLO2.710e-1137.21Exportin-T n=1 Tax=Chlamydomonas eustigma TaxID=11... [more]
A0A1Y1IKH1_KLENI9.390e-1139.77Exportin-T n=1 Tax=Klebsormidium nitens TaxID=1052... [more]
A0A8J5F3H0_ZINOF1.750e-1040.91Exportin-T n=6 Tax=Zingiber officinale TaxID=94328... [more]
A0A0D2KJN1_9CHLO7.790e-1037.21Exportin-T n=1 Tax=Monoraphidium neglectum TaxID=1... [more]
A0A2V0NUT8_9CHLO8.390e-1037.21Exportin-T n=1 Tax=Raphidocelis subcapitata TaxID=... [more]
A0A6J8DGJ6_MYTCO1.150e-933.33Exportin-T n=3 Tax=Mytilus coruscus TaxID=42192 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19894contigEcto-sp13_S_contig19894:1875..2537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score162.9
Seed ortholog evalue6.7e-38
Seed eggNOG ortholog2880.D7FNT8
Model size285
KEGG koko:K14288
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005049,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008536,GO:0009653,GO:0009791,GO:0009888,GO:0009908,GO:0009933,GO:0010014,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016363,GO:0017016,GO:0019899,GO:0022414,GO:0031267,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048367,GO:0048507,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0051020,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0061458,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071528,GO:0071702,GO:0071705,GO:0090567,GO:0097064,GO:0097159,GO:0140104,GO:0140142,GO:1901363
Exons2
EggNOG free text desc.tRNA re-export from nucleus
EggNOG OGsKOG2021@1,KOG2021@2759
Cds size267
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.9852293-CDS-Ecto-sp13_S_contig19894:1874..20281681463002.9852293-CDS-Ecto-sp13_S_contig19894:1874..2028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19894 1875..2028 -
1681463003.0017695-CDS-Ecto-sp13_S_contig19894:2406..25191681463003.0017695-CDS-Ecto-sp13_S_contig19894:2406..2519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19894 2407..2519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.0129046-UTR-Ecto-sp13_S_contig19894:2519..25371681463003.0129046-UTR-Ecto-sp13_S_contig19894:2519..2537Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19894 2520..2537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19894.6465.1prot_Ecto-sp13_S_contig19894.6465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19894 1875..2519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19894.6465.1

>prot_Ecto-sp13_S_contig19894.6465.1 ID=prot_Ecto-sp13_S_contig19894.6465.1|Name=mRNA_Ecto-sp13_S_contig19894.6465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MRVSNSVAQICGVIYEVVAAFKTEVPQLAAFALETLQKYIGWIDIAQVVN
ERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKVGVPPL*
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mRNA from alignment at Ecto-sp13_S_contig19894:1875..2537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19894.6465.1 ID=mRNA_Ecto-sp13_S_contig19894.6465.1|Name=mRNA_Ecto-sp13_S_contig19894.6465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19894:1875..2537- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCACTGCAGGACACGATGCGCGTCTCCAACTCGGTGGCGCAAATTTG CGGCGTAATCTACGAAGTCGTGGCCGCTTTCAAGACAGAGGTGCCGCAGC TTGCCGCGTTCGCTCTGGAGACGCTTCAAAAGTGAGACGGGGGGAACGGG GACACCGAAGTGTGCAAGCTTGCCGACAAACACGAACCACTATCATGCCT TCCGCCGCCCCCTCCGCCCTTTTCTGTATTCTCAGCAGCAGTCCCCCCTT CCTCGATTGGTGCTTATTGTCGGGAGGGGAGGGGATAGTAGAGTTGTGTG TTGCATCGGGTGGTTCGCCGCCGTGGCGTTTGTTGCCGGGCACCCCGGCT GTCAAATTGTTTCTGTGTGGTTCTTCCATCGCCTGGCCTGCTTCCTAGCG TGCGAATGTAAAAGCTGATTGCTGCTCTACAGCGCAGCAATCTCGCTTTT CTCTTCTGGTGCGTAAGCGGTAACCAGAGTGCGCGGATGTAACAACACGG GCTTCGCAGGTACATCGGGTGGATCGACATCGCGCAGGTGGTGAACGAGC GGTTCCTCCAGCTGTTCTTGGGGTGCCTCAGGTCGACCGACGAGCAGCTG GTCCGCCGGTCGTGCTCGTGCATCCTCGAGGTCGTCAACAAGGTGGGTGT GCCACCTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19894:1875..2537-

>mRNA_Ecto-sp13_S_contig19894.6465.1 ID=mRNA_Ecto-sp13_S_contig19894.6465.1|Name=mRNA_Ecto-sp13_S_contig19894.6465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19894:1875..2537- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGTCTCCAACTCGGTGGCGCAAATTTGCGGCGTAATCTACGAAGT
CGTGGCCGCTTTCAAGACAGAGGTGCCGCAGCTTGCCGCGTTCGCTCTGG
AGACGCTTCAAAAGTACATCGGGTGGATCGACATCGCGCAGGTGGTGAAC
GAGCGGTTCCTCCAGCTGTTCTTGGGGTGCCTCAGGTCGACCGACGAGCA
GCTGGTCCGCCGGTCGTGCTCGTGCATCCTCGAGGTCGTCAACAAGGTGG
GTGTGCCACCTTTGTGA
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