mRNA_Ecto-sp13_S_contig19889.6461.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19889.6461.1
Unique NamemRNA_Ecto-sp13_S_contig19889.6461.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19889.6461.1 vs. uniprot
Match: D7FWJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.340e-33
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MGEEDMPFQSATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACLKLGEAVLECTNK 180
            MGEEDMPF SATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEAC+KLG AVLECT+K
Sbjct:    1 MGEEDMPFPSATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACMKLGVAVLECTSK 60
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BLAST of mRNA_Ecto-sp13_S_contig19889.6461.1 vs. uniprot
Match: A0A6L2NXU0_TANCI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NXU0_TANCI)

HSP 1 Score: 48.1 bits (113), Expect = 1.430e-5
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   34 TRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACLKLGEAVLEC 171
            T  VL+S +K + + C  EN+AF KCK ++S+PE CL+ G  V  C
Sbjct:   11 TSAVLMSASKHIATRCRGENVAFLKCKKDDSNPEKCLEKGRQVTRC 56
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BLAST of mRNA_Ecto-sp13_S_contig19889.6461.1 vs. uniprot
Match: S8DNJ9_FOMPI (NADH-ubiquinone oxidoreductase n=5 Tax=Fomitopsidaceae TaxID=1769247 RepID=S8DNJ9_FOMPI)

HSP 1 Score: 47.4 bits (111), Expect = 6.840e-5
Identity = 25/47 (53.19%), Postives = 26/47 (55.32%), Query Frame = 1 
Query:   31 ATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACLKLGEAVLEC 171
            AT   L S A  LG+ C D N  F  CKAEN DPE CLK G  V  C
Sbjct:   33 ATSAPLKSAAFFLGAYCKDYNEDFMLCKAENRDPEHCLKEGRRVTRC 79
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BLAST of mRNA_Ecto-sp13_S_contig19889.6461.1 vs. uniprot
Match: A0A6A6KHU1_HEVBR (CHCH domain-containing protein n=4 Tax=rosids TaxID=71275 RepID=A0A6A6KHU1_HEVBR)

HSP 1 Score: 46.2 bits (108), Expect = 8.540e-5
Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   34 TRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACLKLGEAVLEC 171
            T  VL +++K + + C+ EN+AF KCK ++ +PE CL  G+ V  C
Sbjct:   14 TSAVLTASSKHISARCLQENVAFLKCKKKDPNPEKCLDKGQEVTRC 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19889.6461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWJ7_ECTSI3.340e-3393.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6L2NXU0_TANCI1.430e-545.65NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
S8DNJ9_FOMPI6.840e-553.19NADH-ubiquinone oxidoreductase n=5 Tax=Fomitopsida... [more]
A0A6A6KHU1_HEVBR8.540e-541.30CHCH domain-containing protein n=4 Tax=rosids TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19889contigEcto-sp13_S_contig19889:2205..2736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size186
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_003330.1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.6308439-CDS-Ecto-sp13_S_contig19889:2204..22741681463002.6308439-CDS-Ecto-sp13_S_contig19889:2204..2274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19889 2205..2274 +
1681463002.6431339-CDS-Ecto-sp13_S_contig19889:2620..27361681463002.6431339-CDS-Ecto-sp13_S_contig19889:2620..2736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19889 2621..2736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19889.6461.1prot_Ecto-sp13_S_contig19889.6461.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19889 2205..2736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19889.6461.1

>prot_Ecto-sp13_S_contig19889.6461.1 ID=prot_Ecto-sp13_S_contig19889.6461.1|Name=mRNA_Ecto-sp13_S_contig19889.6461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MGEEDMPFQSATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACLKL
GEAVLECTNKV*
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mRNA from alignment at Ecto-sp13_S_contig19889:2205..2736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19889.6461.1 ID=mRNA_Ecto-sp13_S_contig19889.6461.1|Name=mRNA_Ecto-sp13_S_contig19889.6461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=532bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19889:2205..2736+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAGGAGGATATGCCGTTCCAGTCAGCCACAAGAGATGTGCTCAT
CTCTACAGCGAAGCTTTTGGGTGAGGTTTCATTTTTGAGCCACTGCGGTG
ACAAGCCGACGCAACCAAGTAGTCGTCTACTGACTCTGCGCAACGCCATG
ACGCCGAGCACGCGTGAAAATCTTGTGCATTCCTTACAGGAATATACCAG
TGGTGATCTTGCTCCAAGAAGTCAAGGCAGACGGAAACATGATGAAATTT
GCGGGGCCCCCGTGTCTGAGGACTTGGGAGAGACCAGCTCCATAAAGGAG
TGTCGTAACCCCCTCCCCCGCCATCAATGGTCTAACGACTACGGCATGCA
CGGCTATGAGCAAACCTCACCCCCCCTCCAACGCCCCCCCCCCTGCTTGG
AAACCCTTGCTGATAGGCTCGAGCTGCGTGGATGAGAACCTTGCGTTTAC
CAAGTGCAAGGCAGAAAACTCAGACCCGGAGGCTTGCCTGAAGCTCGGCG
AGGCCGTCTTGGAGTGCACCAATAAAGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19889:2205..2736+

>mRNA_Ecto-sp13_S_contig19889.6461.1 ID=mRNA_Ecto-sp13_S_contig19889.6461.1|Name=mRNA_Ecto-sp13_S_contig19889.6461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19889:2205..2736+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAGGAGGATATGCCGTTCCAGTCAGCCACAAGAGATGTGCTCAT
CTCTACAGCGAAGCTTTTGGGCTCGAGCTGCGTGGATGAGAACCTTGCGT
TTACCAAGTGCAAGGCAGAAAACTCAGACCCGGAGGCTTGCCTGAAGCTC
GGCGAGGCCGTCTTGGAGTGCACCAATAAAGTGTGA
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