mRNA_Ecto-sp13_S_contig19887.6459.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19887.6459.1
Unique NamemRNA_Ecto-sp13_S_contig19887.6459.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 1.470e-116
Identity = 170/254 (66.93%), Postives = 198/254 (77.95%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA + KLR+AL++RA EI+A RNP A G+ PI GE LT+EQL SV  +VF ELGNM QTPVQHEMP+ET+LEK GA+DARI+TG K   E FTLCLAV  +  KVPLR IFKGTP IPP  PGKGK  QP K SIA E+ P NRSK G+PV GMS GVQEKSWCD+REC LW+  +W LRPN+ S+ KQRP ILVLD+F+CH+D  FIA+ +R+ NT  I IPGGL PLLQPLDRMLNK+MK L+RG YT Y
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKE-KERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 5.370e-113
Identity = 171/254 (67.32%), Postives = 199/254 (78.35%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA + KLR+AL++RAGEI+A R+P A  + PI GE LT EQLASV  +VF+ELGNM QTPVQHEMP+ETTLEK GA+DARISTG K   E FTL LAVMA+G KV  RIIFKGTPFIPP   GKGK   P K S+A EI P NR+K  HP +GMS GVQEKSW D RECN W+S +W LRPN+ SI +QRP ILVLD+F+CH+D+ +IA  +R  NT  I+IPGGL PLLQPLDRMLNKQMK L+RG+YTAY
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKE-KERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 3.410e-112
Identity = 172/254 (67.72%), Postives = 198/254 (77.95%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA + KLR+AL+KRAGEI+A R+P A  + PI GE LT+EQLASV  +VFEELGNM QTPVQHE+P+ETTLEK GA+DARISTG K   E FTL LAVMA+G KV  RIIFKGTPF PPT  GKGK   P K S+A EI P NR+K GHP +GMS GVQEKSW D RECN W+S +W LRPN+ SI +QRP ILVLD+F+CH+D+ FIA  +R  NT  I IPG L PLLQPLDRMLNKQMK L+R +YTAY
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKE-KERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 4.970e-109
Identity = 172/254 (67.72%), Postives = 200/254 (78.74%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA + KLRKALL+RAGEI+A+R P A G+ PI GE L++ QL  V +++FEELGNM QTPVQHEMP+ETTLE  GA+DARI+TG K   E FTLCLAV A+G KVPLRIIFKGTPF+PP TPGKGK  QP K SIA E+ P NRSK G PV GMS GVQEKSWCD+REC LW+  +W LRPN+ SI +QR  ILVLD+F+CH+D  FIA  +R+ NT  I IPGGL PL QPLDRMLNKQMK L+RG YTA+
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKE-KERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 4.250e-108
Identity = 166/254 (65.35%), Postives = 196/254 (77.17%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA + KL +AL+KRAGEI+A R+P A  + PI GE L +EQLASV  +VFEE+GNM Q PVQHEMP+ETTL+K GA+DARISTG  +  E FTL LAV A+G KV  RIIF+GTPFIPPT  GKGK  +P K  +A E+ P NR+K GHP +GMS GVQEKSW D RECN W+S +W LRPN+ SI +QRP ILVLD+F+CH D+ FIA  +R  NT  I IPGGL PLLQPLDRMLNKQMK L+RG+YTAY
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 4.360e-108
Identity = 165/250 (66.00%), Postives = 194/250 (77.60%), Query Frame = 1
Query:   13 IITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            ++ KLR+AL+KRAGEI+A R+P A  + PI GE LT+EQLASV  +VFE+LGNM QTPVQHEMP+ETTLEK GA+DAR+STG +   E FTL LAV A+G KV LRIIF GTPFIPPT  GKGK   P K S+A E+ P NR+K GHP +GMS GVQEKSW D RECN W S +W LRPN+ SI +QRP ILVLD+F+CH+D+ FIA  +R  NT  I IPGGL PLLQPLDRMLNKQ K L+R +YTAY
Sbjct:    1 MVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEE-KERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 1.120e-107
Identity = 168/279 (60.22%), Postives = 201/279 (72.04%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEK-------------------------SHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA + KLRKALL+RAGEI+A+R P A G+ PI GE L++ QL  V +++F++LGNM QTPVQ+EMP+ETTLEK GA+DARI+TG                              E FTLCLAV A+G+KVPLRIIFKGTPF+PP TPGKGK  QP K SIA E+ P NRSK G PV GMS GVQEKSWCD+RE  LW+  +W LRPN+ S+ +QR  ILVLD+F+CH+D  FIA  +R+ NT  I IPGGL PLLQPLDRMLNKQMK L+RG YTA+
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 8.180e-105
Identity = 168/262 (64.12%), Postives = 194/262 (74.05%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLL--------RPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA +TKLR+AL+KRAGEI+A R+P A  + PI GE LT+EQ ASV  +VFEELGNM QTPVQHEMP+ETTLE  G +DARISTG K   E FTL LAVMA+G  V   IIFKGTPFIPPT  GKGK   P K S+A E+ P NR+K GHP +GMS GVQEKSW   +ECN W+  +W L        RPN+ SI +QRP ILVLD+F+CH+D+ FIA   R  NT  I IPGGL PLLQPLDRMLNKQMK L+RG+YTAY
Sbjct:  217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKE-KERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 6.920e-102
Identity = 162/254 (63.78%), Postives = 190/254 (74.80%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGRYTAY 762
            MAWA + KLRKALL+RAG+I+A+R P A G+ PI GE L++ QL  V +++FEELGNM QTPVQHE P+E  L K   +    S  E    E FTLCLAV A+G KVPLRIIFKGTPF+PP TPGKGK  QP K SIA E+ P NRSK G PV GMS GVQEKSWCD+REC LW+  +W LRPN+ SI +QR  ILVLD+F+CH+D  FIA  +R+ NT  I IPGGL PLLQPLDRMLNKQMK L+RG YTA+
Sbjct:  187 MAWATLMKLRKALLERAGKIYAQRYPPAPGENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVER-LWKRPVRRMPASPPE----ERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 435          
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.010e-101
Identity = 166/249 (66.67%), Postives = 191/249 (76.71%), Query Frame = 1
Query:    1 MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQVFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAVMANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFGHPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDNFRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRG 747
            +A+A + KLR ALL+RAGEI+A RNP A+G+ PI G+ LT  QL SVA +VFEELGNM QTPVQ EMP+ETTLEK G +DARISTG K  +  FT CLAVMA+G KVP RIIFKG PFIPP+T G+ K  Q  K  IA E+   NR+KFG+PVSGM   VQEKSWCD REC LWLS +W  RPNH S+ KQR  ILVLD+FRCHR + F+ D  R+ NTT ILIPGGL PLLQPLDRMLNK+MK LMRG
Sbjct:  132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDR-FTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19887.6459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI1.470e-11666.93DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE5.370e-11367.32DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE3.410e-11267.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE4.970e-10967.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT8_9PHAE4.250e-10865.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE4.360e-10866.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.120e-10760.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE8.180e-10564.12DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE6.920e-10263.78DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE2.010e-10166.67Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19887contigEcto-sp13_S_contig19887:1392..2702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score342.8
Seed ortholog evalue1.4e-91
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
Model size762
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
Cds size762
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.5556796-CDS-Ecto-sp13_S_contig19887:1391..16611681463002.5556796-CDS-Ecto-sp13_S_contig19887:1391..1661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19887 1392..1661 +
1681463002.5695908-CDS-Ecto-sp13_S_contig19887:2210..27021681463002.5695908-CDS-Ecto-sp13_S_contig19887:2210..2702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19887 2211..2702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19887.6459.1prot_Ecto-sp13_S_contig19887.6459.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19887 1392..2702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19887.6459.1

>prot_Ecto-sp13_S_contig19887.6459.1 ID=prot_Ecto-sp13_S_contig19887.6459.1|Name=mRNA_Ecto-sp13_S_contig19887.6459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MAWAIITKLRKALLKRAGEIFAERNPGAAGQIPIDGEGLTAEQLASVAEQ
VFEELGNMGQTPVQHEMPMETTLEKDGAQDARISTGEKSHNEGFTLCLAV
MANGSKVPLRIIFKGTPFIPPTTPGKGKRAQPLKVSIAVEIAPGNRSKFG
HPVSGMSCGVQEKSWCDMRECNLWLSSNWLLRPNHESITKQRPGILVLDN
FRCHRDKEFIADPERKCNTTAILIPGGLCPLLQPLDRMLNKQMKWLMRGR
YTAY
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mRNA from alignment at Ecto-sp13_S_contig19887:1392..2702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19887.6459.1 ID=mRNA_Ecto-sp13_S_contig19887.6459.1|Name=mRNA_Ecto-sp13_S_contig19887.6459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19887:1392..2702+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTGGGCCATAATCACCAAGCTTCGGAAGGCTCTGTTGAAGCGCGC CGGCGAAATCTTTGCTGAGCGAAACCCGGGTGCAGCTGGTCAGATCCCCA TCGACGGGGAGGGTCTGACTGCCGAGCAGCTGGCGTCGGTGGCGGAGCAG GTTTTCGAAGAACTCGGCAACATGGGCCAGACGCCCGTCCAGCACGAGAT GCCGATGGAGACAACTCTAGAGAAGGATGGTGCGCAGGACGCTCGCATCA GCACAGGAGAAAAGAGCCATGTTGGTATTGTTGCTGTAACGACTCGGAAT TTGGTTGGGATTGCTGGCACAGCAGTTTACAGTTTTTGGCACGGCATCAC TACCAGGCCTTTCGCGCCTTCATCTTAACAAACAGCGTTAAGGCCACGCC AGGTTCCTCAAAACAAAAAGCGTTGAACGAGGGGTTGGCGTTTCGCAAGC AAGACGAAACAACTTGAACTCAGAGAAAGCGAGTTGAACAAAAGCAGCTT TTTTCGGGGGGTGGACGAAAAAAAAAAACGAAAAAGCATACATCAACTTT GTTCAACGCTGTCTGCTGTTGCTGTCAAGTCACGCGACGCCAATCACACA CCGTATCGGTAGGCCCTGGTACTTCGGAGCAGGTTTGCTTGTGGCGTGCT CTAGATGTTTGCCACTGAAGCACACTCTACTGCGCTGGGTCACCCAAACT TTCTGCGGGAAGATTGTGCAAACCGCAACACTCCAAGCGCCTGGATCTTG ACACCTCCTTTTCCCCGCCCTTCCGCTTTCCAAACATGTTTTACCGATAA TTCAATCGCAGGCAAGGAGAATGAGGGTTTCACCCTTTGTCTTGCTGTCA TGGCGAACGGCAGCAAGGTTCCGCTGCGTATCATCTTCAAGGGCACGCCA TTCATCCCGCCGACGACGCCGGGGAAGGGCAAGCGAGCTCAGCCACTCAA GGTCTCTATAGCGGTAGAGATTGCCCCTGGGAACCGCAGCAAATTCGGGC ACCCGGTGTCGGGCATGTCGTGTGGCGTGCAGGAGAAGAGCTGGTGTGAC ATGCGGGAGTGCAACCTTTGGCTCTCGTCCAACTGGCTGCTTCGCCCCAA CCACGAAAGCATAACAAAGCAGCGTCCAGGCATCTTGGTGCTGGACAACT TTAGGTGCCACCGAGACAAAGAGTTCATTGCCGACCCCGAGAGGAAGTGC AACACCACGGCCATCCTGATCCCGGGCGGCTTGTGTCCTCTCCTCCAGCC GCTGGACCGCATGCTGAACAAACAAATGAAGTGGCTGATGCGGGGGAGGT ACACCGCCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19887:1392..2702+

>mRNA_Ecto-sp13_S_contig19887.6459.1 ID=mRNA_Ecto-sp13_S_contig19887.6459.1|Name=mRNA_Ecto-sp13_S_contig19887.6459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19887:1392..2702+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTGGGCCATAATCACCAAGCTTCGGAAGGCTCTGTTGAAGCGCGC
CGGCGAAATCTTTGCTGAGCGAAACCCGGGTGCAGCTGGTCAGATCCCCA
TCGACGGGGAGGGTCTGACTGCCGAGCAGCTGGCGTCGGTGGCGGAGCAG
GTTTTCGAAGAACTCGGCAACATGGGCCAGACGCCCGTCCAGCACGAGAT
GCCGATGGAGACAACTCTAGAGAAGGATGGTGCGCAGGACGCTCGCATCA
GCACAGGAGAAAAGAGCCATAATGAGGGTTTCACCCTTTGTCTTGCTGTC
ATGGCGAACGGCAGCAAGGTTCCGCTGCGTATCATCTTCAAGGGCACGCC
ATTCATCCCGCCGACGACGCCGGGGAAGGGCAAGCGAGCTCAGCCACTCA
AGGTCTCTATAGCGGTAGAGATTGCCCCTGGGAACCGCAGCAAATTCGGG
CACCCGGTGTCGGGCATGTCGTGTGGCGTGCAGGAGAAGAGCTGGTGTGA
CATGCGGGAGTGCAACCTTTGGCTCTCGTCCAACTGGCTGCTTCGCCCCA
ACCACGAAAGCATAACAAAGCAGCGTCCAGGCATCTTGGTGCTGGACAAC
TTTAGGTGCCACCGAGACAAAGAGTTCATTGCCGACCCCGAGAGGAAGTG
CAACACCACGGCCATCCTGATCCCGGGCGGCTTGTGTCCTCTCCTCCAGC
CGCTGGACCGCATGCTGAACAAACAAATGAAGTGGCTGATGCGGGGGAGG
TACACCGCCTAC
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