mRNA_Ecto-sp13_S_contig1988.6456.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1988.6456.1
Unique NamemRNA_Ecto-sp13_S_contig1988.6456.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1988.6456.1 vs. uniprot
Match: A0A6H5L4E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E1_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 2.300e-76
Identity = 143/151 (94.70%), Postives = 147/151 (97.35%), Query Frame = 1 
Query:    1 RRARRLFNKQMRYKHIRDMVREEKEADEMAVHDRESLKLMKYERALYTIGRVLLGYKGRKIARERRRQLRLEEAAKRFAEREEALRRHEETQRRLEVLRKDEQLAATIIQAAYRSRLARKRVARIREDNRRTRAATMMQQMIRFRGARHEA 453
            RRARRLFNKQMRYKHIRDMVREEKEADEMAVHDRESL+LMKYERAL T+GRVLLGYKGRKIARERRRQLRLEEA KRFAEREEALRRHEETQRRLEVLRKDE+LAATIIQA YRSRLARKRVA IREDNRRTRAATM+QQMIRFRGARHEA
Sbjct:   87 RRARRLFNKQMRYKHIRDMVREEKEADEMAVHDRESLRLMKYERALCTLGRVLLGYKGRKIARERRRQLRLEEAGKRFAEREEALRRHEETQRRLEVLRKDEKLAATIIQAVYRSRLARKRVALIREDNRRTRAATMIQQMIRFRGARHEA 237
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BLAST of mRNA_Ecto-sp13_S_contig1988.6456.1 vs. uniprot
Match: D7FQA7_ECTSI (Hypothetical leucine rich repeat and MORN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA7_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 7.110e-75
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 1 
Query:    1 RRARRLFNKQMRYKHIRDMVREEKEADEMAVHDRESLKLMKYERALYTIGRVLLGYKGRKIARERRRQLRLEEAAKRFAEREEALRRHEETQRRLEVLRKDEQLAATIIQAAYRSRLARKRVARIREDNRRTRAATMMQQMIRFRGARHEA 453
            RRARRLFNKQMRYKHIRDMVREEKEADEM VHDRESLKLMKYERAL TIGRVLLGYKGRKIARERRRQLRLEEA KRFAEREEALRRHEETQRRLEVLRKDEQLAA IIQAAYRSRLARKRVARI+EDNRRTRAATM+QQMIRFRGARHEA
Sbjct: 1280 RRARRLFNKQMRYKHIRDMVREEKEADEMVVHDRESLKLMKYERALCTIGRVLLGYKGRKIARERRRQLRLEEAGKRFAEREEALRRHEETQRRLEVLRKDEQLAAIIIQAAYRSRLARKRVARIKEDNRRTRAATMIQQMIRFRGARHEA 1430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1988.6456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4E1_9PHAE2.300e-7694.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQA7_ECTSI7.110e-7596.03Hypothetical leucine rich repeat and MORN domain-c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1988contigEcto-sp13_S_contig1988:12179..14396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score237.7
Seed ortholog evalue3.4e-60
Seed eggNOG ortholog2880.D7FQA7
Preferred nameFBXO39
Model size455
KEGG rclassRC00002
KEGG koko:K00939,ko:K10314
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759,KOG1032@1,KOG1032@2759,KOG1947@1,KOG1947@2759
EC2.7.4.3
Cds size423
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.3496878-CDS-Ecto-sp13_S_contig1988:12178..123011681463002.3496878-CDS-Ecto-sp13_S_contig1988:12178..12301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 12179..12301 -
1681463002.361575-CDS-Ecto-sp13_S_contig1988:12868..129791681463002.361575-CDS-Ecto-sp13_S_contig1988:12868..12979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 12869..12979 -
1681463002.3741972-CDS-Ecto-sp13_S_contig1988:13623..138071681463002.3741972-CDS-Ecto-sp13_S_contig1988:13623..13807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 13624..13807 -
1681463002.3838801-CDS-Ecto-sp13_S_contig1988:14361..143661681463002.3838801-CDS-Ecto-sp13_S_contig1988:14361..14366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 14362..14366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.3941734-UTR-Ecto-sp13_S_contig1988:14366..143961681463002.3941734-UTR-Ecto-sp13_S_contig1988:14366..14396Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1988 14367..14396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1988.6456.1prot_Ecto-sp13_S_contig1988.6456.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1988 12179..14366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1988.6456.1

>prot_Ecto-sp13_S_contig1988.6456.1 ID=prot_Ecto-sp13_S_contig1988.6456.1|Name=mRNA_Ecto-sp13_S_contig1988.6456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MRYKHIRDMVREEKEADEMAVHDRESLKLMKYERALYTIGRVLLGYKGRK
IARERRRQLRLEEAAKRFAEREEALRRHEETQRRLEVLRKDEQLAATIIQ
AAYRSRLARKRVARIREDNRRTRAATMMQQMIRFRGARHEA
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mRNA from alignment at Ecto-sp13_S_contig1988:12179..14396-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1988.6456.1 ID=mRNA_Ecto-sp13_S_contig1988.6456.1|Name=mRNA_Ecto-sp13_S_contig1988.6456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1988:12179..14396- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAGGGCGAGGAGACTCTTCAACAAGCAGATGAGGTACGCGCGGGGCGC
AAACACACACAAACGTGTTTGTGGAAGACTGCCCTGTTTTGTTGGTTGGC
CGGGTTTCCGTGCGGTGCTGTAACTCAAGAGTCCACGACACCAACATACG
CAAACGTAACATCTGCGGGCTTCTGCAAAATGGCTTCTGCAAAATAATTT
TTTACCACATTTGTTTGCTACGAGGGGTGGATGCCCACATTTCGCATGAC
ATGATTTTATGTTGGGACCTGTCGGTAAGTCTTGCTCCTCGACGGCACGT
GTAGGGTACAAAGTCCAGTTTGAATCACCTCTTTCGGTTGAACCCTTTTG
GGGGACTAGATGGGCACCGAAGAACGTCGTACCGGATGGCGGGGAGTCTG
CGCTTGGGATGTCTTTTTGGCATGAGATTTCCAGCAACTCAACGGTGGAT
TGTACGCCCTGTTTGGTTGGACCGCACGCACGAAGTTGTGGCTGGGTGTA
TACGTTGTCTCCTGTAGGCTCACTTGCACGCTGCCATAACTACACTCGTT
TTTTGTTGCCGCATCTCAAACCCTATTGCTTCGCCTCAGGTACAAGCACA
TCCGCGACATGGTCCGAGAGGAAAAGGAGGCGGATGAGATGGCCGTGCAC
GACCGGGAGAGTCTGAAGTTGATGAAATACGAAAGAGCTCTCTACACGAT
AGGCCGCGTTCTCCTTGGTTATAAGGGGCGTAAGATCGCCAGAGAGAGGA
GACGCCAACTCAGGCTGGAAGAGGTGTGCGAAGTGACACGGAAAACAGAA
ACGTTGATAGCGCTTGTTGAAACAAGACCCACGGTATCGTTTTCGTTGAC
AAGGGGTGAATACGTGCATACCCTTAGTGGACGCGTGCACTTGGAAACCG
CAAGGTGTGCATCGTTTTGCATACCGTGCGTCGGTTAGTACAGCTTGATG
TTTTTTGGTTAATCAGTGCTGCCGTTGGCCTCCGAAGTGCCTGTTCGGCC
TCCAAAGTGCCTGTTCGCCATGTGCTACGTTTACTTCCACGCCCGAAAGA
ACACACGCGTTACTTTACTGTTTCTCGACTCTTGAAGCTTGAGCATATTG
CACCATTTGTAGTCAATGCCGCAGTACCGTACATCACACCGAGAGGTAAG
AATATTTCCTACCCCTCACGAATATGCCTTATTTATATTGGAATGGCGGA
TGTTTCACGTGAACGGTGGTTCCTCTGCTTTCGTGTTTTCCGCGTATCGC
ATCAATCCTCCTGCCTTGTATATTCACGGTCACGAATCGTATATGCCTGT
GCGGCAACTTGCTCCTGGTGTCAACGCCCCGACCGTGGTTTGGAGCTGCC
ATTCTAGTGTTGTTGTCATTGCCACTACCGGTGCTGCTCATGTTGACGAC
GATTGTGCTACACGCAGGCTGCCAAAAGGTTTGCAGAGAGAGAGGAAGCG
CTGCGGCGGCACGAAGAAACCCAGCGGAGGCTAGAGGTCCTCCGGAAAGA
TGAGCAACTGGCAGCAACCATCATACAGGTACCTCGCTTGACTGCATCGA
GAAATGGAAAATGTTGCGATCTCAATTTGATAGTCGGCAAAGAGAAACCC
CCGACGAAAAATACGGAAAAAGGGTTTACTGTCGTTGACGGAAATCAGGT
TGACGCAAACATATAGCTTGAGGTGGTCGTGAGACGTGAAACCGTTTTGA
TGTTGTGTCGGCGGAAAGACAATATTGAGTGTTTTGGGGGGGGGTCCTAC
GGGAGGTGAACGACCTCAGTGAGAGTTAGGGTCATGATAAGGTGCACGGG
CGTGCCTCACGAGACTGACCGGCTGGGCGCTCCTTGTCTCAGCCAACACA
ACACTTAGGCTCAAATAACATCAGACATCACAGGAATTCCTCTCGCTCTC
GCACGACTCTGCCTGCCGGGCTAGCTAATATCAAACGTCCCGTTTGGTTT
CCGGTTTTGCTCACACGCTCTCTTCTGCCGTCTGTGATGCACTTCCGTCG
GTTCCGACGGTACGTTCTTACACGTGCTGGACATTTCGTTACATGTGGTC
CTTCGTTGCAATGTACTACATACACACACACCCGAACCTTTGCAGGCGGC
GTATCGGAGTAGATTGGCCCGGAAACGTGTCGCACGTATTAGGGAAGACA
ACCGCCGCACGAGAGCGGCGACAATGATGCAACAGATGATCCGCTTCAGG
GGTGCTCGGCACGAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1988:12179..14396-

>mRNA_Ecto-sp13_S_contig1988.6456.1 ID=mRNA_Ecto-sp13_S_contig1988.6456.1|Name=mRNA_Ecto-sp13_S_contig1988.6456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1988:12179..14396- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTACAAGCACATCCGCGACATGGTCCGAGAGGAAAAGGAGGCGGA
TGAGATGGCCGTGCACGACCGGGAGAGTCTGAAGTTGATGAAATACGAAA
GAGCTCTCTACACGATAGGCCGCGTTCTCCTTGGTTATAAGGGGCGTAAG
ATCGCCAGAGAGAGGAGACGCCAACTCAGGCTGGAAGAGGCTGCCAAAAG
GTTTGCAGAGAGAGAGGAAGCGCTGCGGCGGCACGAAGAAACCCAGCGGA
GGCTAGAGGTCCTCCGGAAAGATGAGCAACTGGCAGCAACCATCATACAG
GCGGCGTATCGGAGTAGATTGGCCCGGAAACGTGTCGCACGTATTAGGGA
AGACAACCGCCGCACGAGAGCGGCGACAATGATGCAACAGATGATCCGCT
TCAGGGGTGCTCGGCACGAGGCG
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