mRNA_Ecto-sp13_S_contig1988.6455.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1988.6455.1
Unique NamemRNA_Ecto-sp13_S_contig1988.6455.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1988.6455.1 vs. uniprot
Match: D7FQA7_ECTSI (Hypothetical leucine rich repeat and MORN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA7_ECTSI)

HSP 1 Score: 466 bits (1198), Expect = 1.130e-147
Identity = 237/247 (95.95%), Postives = 240/247 (97.17%), Query Frame = 1 
Query:    1 GDAVQILNREHEFCGFTGRVLHVDSRDPGREVAEVKIDDGTARVVFVRLLSHEVGSEDIPVVNMLKINRQELRHHEPEELDLVRDALLAWADREREKWRPQLAAVAIQRRIRGFIARRSTARRRYRHWTRERALRLTFLRALDVNNTATYQAVRAAVKMRVIRATDVPTNMPWIPLVPPRLEEAFKRRRRRIILQEEIRTRTAERMALIKKNPRKLQWKTPTHGPLIRPYHPYKEAWARLLSKVAHP 741
            GDAVQILNREHEFCGFTGRVLHVDSRDPGREVAEVKIDDGTARVVFVRLLSHEVGSEDIPVVNMLKINRQELRHHEPEEL LVRDALLAWADREREKWR QLAAVAIQRRIRGFIARRSTARRRYRHWTRERALRLTFLRALDVNN ATYQAVRAAV MRVIRATDVPTNMPWIP VPPRLEEAFKRRRRRIILQEEIRTRTAERMAL+ KNPRKLQWKTPT+GPLIRPY+PYKEAWARLLSKV HP
Sbjct: 1541 GDAVQILNREHEFCGFTGRVLHVDSRDPGREVAEVKIDDGTARVVFVRLLSHEVGSEDIPVVNMLKINRQELRHHEPEELALVRDALLAWADREREKWRTQLAAVAIQRRIRGFIARRSTARRRYRHWTRERALRLTFLRALDVNNAATYQAVRAAVMMRVIRATDVPTNMPWIPPVPPRLEEAFKRRRRRIILQEEIRTRTAERMALVDKNPRKLQWKTPTYGPLIRPYNPYKEAWARLLSKVTHP 1787
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BLAST of mRNA_Ecto-sp13_S_contig1988.6455.1 vs. uniprot
Match: A0A6H5L4E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.530e-40
Identity = 104/236 (44.07%), Postives = 106/236 (44.92%), Query Frame = 1 
Query:    1 GDAVQILNREHEFCGFTGRVLHVDSRDPGREVAEVKIDDGTARVVFVRLLSHEVGSEDIPVVNMLKINRQELRHHEPEELDLVRDALLAWADREREKWRPQLAAVAIQRRIRGFIARRSTARRRYRHWTRERALRLTFLRALDVNNTATYQAVRAAVKMRVIRATDVPTNMPWIPLVPPRLEEAFKRRRRRIILQEEIRTRTAERMALIKKNPRKLQWKTPTHGPLIRPYHPYKEA 708
            GDAVQILNREHEFCGFTGRVLHVD RDPGREVAE                                INRQELRHHEPEEL LVRDALLAWADREREKWRPQLAAVAIQRRIR                                                                                              ALI KN +KLQWKTPT+GPLIRPYHPYKEA
Sbjct:  363 GDAVQILNREHEFCGFTGRVLHVDCRDPGREVAE--------------------------------INRQELRHHEPEELALVRDALLAWADREREKWRPQLAAVAIQRRIR----------------------------------------------------------------------------------------------ALINKNSKKLQWKTPTYGPLIRPYHPYKEA 472
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1988.6455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQA7_ECTSI1.130e-14795.95Hypothetical leucine rich repeat and MORN domain-c... [more]
A0A6H5L4E1_9PHAE2.530e-4044.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1988contigEcto-sp13_S_contig1988:7847..10749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score469.2
Seed ortholog evalue1.2e-129
Seed eggNOG ortholog2880.D7FQA7
Preferred nameFBXO39
Model size744
KEGG rclassRC00002
KEGG koko:K00939,ko:K10314
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons7
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759,KOG1032@1,KOG1032@2759,KOG1947@1,KOG1947@2759
EC2.7.4.3
Cds size741
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1988.6455.1prot_Ecto-sp13_S_contig1988.6455.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1988 7848..10749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.2369752-CDS-Ecto-sp13_S_contig1988:7847..78831681463002.2369752-CDS-Ecto-sp13_S_contig1988:7847..7883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 7848..7883 -
1681463002.2540045-CDS-Ecto-sp13_S_contig1988:8354..84421681463002.2540045-CDS-Ecto-sp13_S_contig1988:8354..8442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 8355..8442 -
1681463002.270586-CDS-Ecto-sp13_S_contig1988:9110..92741681463002.270586-CDS-Ecto-sp13_S_contig1988:9110..9274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 9111..9274 -
1681463002.2790215-CDS-Ecto-sp13_S_contig1988:9418..95361681463002.2790215-CDS-Ecto-sp13_S_contig1988:9418..9536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 9419..9536 -
1681463002.2886894-CDS-Ecto-sp13_S_contig1988:9736..98731681463002.2886894-CDS-Ecto-sp13_S_contig1988:9736..9873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 9737..9873 -
1681463002.302524-CDS-Ecto-sp13_S_contig1988:10244..103401681463002.302524-CDS-Ecto-sp13_S_contig1988:10244..10340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 10245..10340 -
1681463002.3152497-CDS-Ecto-sp13_S_contig1988:10647..107491681463002.3152497-CDS-Ecto-sp13_S_contig1988:10647..10749Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1988 10648..10749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1988.6455.1

>prot_Ecto-sp13_S_contig1988.6455.1 ID=prot_Ecto-sp13_S_contig1988.6455.1|Name=mRNA_Ecto-sp13_S_contig1988.6455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
GDAVQILNREHEFCGFTGRVLHVDSRDPGREVAEVKIDDGTARVVFVRLL
SHEVGSEDIPVVNMLKINRQELRHHEPEELDLVRDALLAWADREREKWRP
QLAAVAIQRRIRGFIARRSTARRRYRHWTRERALRLTFLRALDVNNTATY
QAVRAAVKMRVIRATDVPTNMPWIPLVPPRLEEAFKRRRRRIILQEEIRT
RTAERMALIKKNPRKLQWKTPTHGPLIRPYHPYKEAWARLLSKVAHP
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mRNA from alignment at Ecto-sp13_S_contig1988:7847..10749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1988.6455.1 ID=mRNA_Ecto-sp13_S_contig1988.6455.1|Name=mRNA_Ecto-sp13_S_contig1988.6455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1988:7847..10749- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGCCGTTCAGATCTTGAACCGCGAACACGAGTTCTGCGGGTTCAC
AGGGCGTGTCCTTCACGTTGACTCTAGGGACCCCGGTCGAGAGGTCGCAG
AGGTGACGGAGGAAAGGGGGGAGGACATGTCCCTACCTCCCTTTGTTTGA
AAACATATGTGCAGCGCGGTTGTTCCTCAAGGCTGATGGGGTCTTAGAAG
TTGTGACCCAATTGGCTACGTAACTGCAAGCTTGCCTCATTAGTTTGCTG
ATGTGCTGCGGTGTTGCGGAACGCTACATGTAGTGGTTGGTAGTACCAGT
GGTACCCAGCCACAACTTCATTGAACGACCGTGAACGCCCTTTTCTCCCC
TGACTACATCTGCTGTTTGCTACCCGCCTACCCCAACTATATGTCCTGGA
CGGATTCAGGTCAAAATCGATGACGGCACTGCTCGCGTTGTCTTCGTCCG
ACTGCTTAGCCACGAGGTTGGGAGCGAAGACATCCCGGTCGTCAATATGC
TCAAGGTCTGGTTCAAGCAAACTAGCGTTTCGAATCCCAGCATATATACG
TGCAATTCGGTAGGCTGCACCACCAACAAGAGCCAAAGGTTTTTGTGGTT
GGAGGGCAGCAAGGGTCTCCAAATCCGGGCTTGCATGCCTAGAAATCCTT
CCCACACGCTCATACCAACCCGCGCAGACGTAATCTTTCCCCCATCGTGA
CATGCTTCTCGTAACCCTTCCTGTGGTCAAGCTTCCCATCCGAAACAACC
CTGTTATCAAGCTACCTTTTAGCGAGTCCATTTCCTCGGCCGCATGCAGT
CATACTCACCCTTCATATTTTTCCCATGTAAGTACTCCCTGTGTACCTAG
TCTGTCCCTTCCTATCTATGCCCCAGATCAACCGACAAGAACTTCGTCAT
CACGAACCGGAGGAGCTTGACCTGGTGAGGGACGCCCTGCTTGCCTGGGC
CGACCGAGAGCGGGAGAAGTGGCGCCCCCAGCTCGCCGCGGTTGCTATCC
AACGACGAATCCGGTGAGCGAGGAGTGCTCACAGCATAGAGTCAGCGGGC
GAGCGCGAGGTGGAGAGGCGATGGAGTTGTCAAGTCGATGGAACCGGTCT
AGCCCCCAGCCTCAAGAATCAGTCAGTTACCTGAGTTTTTCTCACACACT
GCGTGTGTGTTTGTGTGATACCAATATCTTTTGTTCCAATATTGCCGTGA
ATTGCTGTCGTAGGGGGTTCATCGCAAGGCGCAGCACCGCACGGAGAAGA
TACCGTCATTGGACCCGCGAGCGCGCTCTGCGGCTGACGTTTCTCCGAGC
TCTCGATGTCAACAATACTGCCACCTACCAGGTGATTGTTTCGATGCAGT
ACAATAGCTACATTTACTTATTCTGTAGGTCGTGGACGTGGAGGCGGTTC
TGTCCCCACCGCTAGTGTAGCGTGGAGGGCCGCTCACTCAACAACAGGTG
TTTTCTGTGCGTCCTACCAACAAAGGCTGTGCGAGCTGCGGTGAAGATGC
GGGTGATAAGAGCGACGGACGTACCGACGAATATGCCATGGATCCCGCTG
GTGCCGCCGCGACTGGAAGAGGCCTTCAAGCGCCGGAGGCGCCGGATCAT
CCTCCAGGAGGAAATACGAACGCGCACCGCCGAGAGAATGCAAGAAGAAT
TTTGTTTGCATGGGATGATACTGCTTTCGGTTCCTCTTCCGATAGCGCTG
GTTCAACTTACGTATTTGGTTTGAGCTCCCCCTCTCCGCACGAAGCGGTC
TTTATTTAACACCCGCTACATCAAAGCTGCTCGGGACGTTGGTGGTGAGG
GTGATATGACACAAATGAGGTGTAGAAAAAGAGGGGTTAAATATTCGTTG
CTTTTCTTCAATACCCGACAATGTCCGAGAGTCACTCTCCACGGACGCAA
ATAAATGTTATGTGACTGTACTTCTTGCGGAATGGCAACAGCACCGACAA
ATAATGTTGAAAAAGGAATCTTCCGCCGTAAACTTGCTATAAGGGCGAAA
CAGATCGTGAGGGGACGCTGGCATCAAACCACTTTGCTCCCTCTCCACCG
TGGGTGCTGCACAGCTCATTCGGACGTAGGGTGCACCGGTTTGATCAGCA
ACAAACAGGTTGTTCTACTTCCATCATTTTATTCGTTTTTCACGTTCACC
GGTTGCTGATTTGAAAAGCAAAGCTTTATCGAGAAGCAATTTCGATCGCT
GCCCGACCCTGCTTGTGTGTAGTGTCGCTGCCGTTCTTTCTGCGTCTCAC
CCTACTTTCAAGCAACTCCACTCTACTACTTCATGTGCCACTCGTCGGGT
ACTGCAGGGCCTTAATCAAGAAGAATCCCAGGAAGCTGCAGTGGAAAACG
CCTACGCACGGGCCGCTCATCCGGCCCTACCACCCGTACAAAGAGGTACG
CGCGGCAATTGGCCAACACACGGTGGTGGTGGTGCTGCTGCACTGACGAA
CGCTTTGCTGACAATGACACAGCTTAACTTTTCATGTATGCGGGTAACAA
TGAGGAGCCATCGACAAGCCAAGCTACGTGGGTATCTACATGTATCCCGC
GTAAGGATCAGTGAGATTGTGTGTGTTCTTGGAGTAGACTTTCCCCGAAT
CCCTCGATTCCTTGAAGGTAGAGATCCTCCCCCTAATATCACTGTGTTGC
CGCACCATATTGCGTATTTGATCCCCGTTCTCATTGCATGCTCGTTAGCC
AGGGTTGACTATGTTATTGTGACCACCCGGCTGTCCATCAACCTTTGCTT
TCGTTCCCAGTACATGTATGGTGTCCCTGTCCAAACCACACACCAAGATT
TTTCCTGTCTCATTCCCCCACCCGAATCATCATCTGCTCGAATGTCTTTT
GATGCCTTTCACGAAGGCATGGGCCCGACTGCTATCGAAGGTGGCGCACC
CGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1988:7847..10749-

>mRNA_Ecto-sp13_S_contig1988.6455.1 ID=mRNA_Ecto-sp13_S_contig1988.6455.1|Name=mRNA_Ecto-sp13_S_contig1988.6455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1988:7847..10749- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGCCGTTCAGATCTTGAACCGCGAACACGAGTTCTGCGGGTTCAC
AGGGCGTGTCCTTCACGTTGACTCTAGGGACCCCGGTCGAGAGGTCGCAG
AGGTCAAAATCGATGACGGCACTGCTCGCGTTGTCTTCGTCCGACTGCTT
AGCCACGAGGTTGGGAGCGAAGACATCCCGGTCGTCAATATGCTCAAGAT
CAACCGACAAGAACTTCGTCATCACGAACCGGAGGAGCTTGACCTGGTGA
GGGACGCCCTGCTTGCCTGGGCCGACCGAGAGCGGGAGAAGTGGCGCCCC
CAGCTCGCCGCGGTTGCTATCCAACGACGAATCCGGGGGTTCATCGCAAG
GCGCAGCACCGCACGGAGAAGATACCGTCATTGGACCCGCGAGCGCGCTC
TGCGGCTGACGTTTCTCCGAGCTCTCGATGTCAACAATACTGCCACCTAC
CAGGCTGTGCGAGCTGCGGTGAAGATGCGGGTGATAAGAGCGACGGACGT
ACCGACGAATATGCCATGGATCCCGCTGGTGCCGCCGCGACTGGAAGAGG
CCTTCAAGCGCCGGAGGCGCCGGATCATCCTCCAGGAGGAAATACGAACG
CGCACCGCCGAGAGAATGGCCTTAATCAAGAAGAATCCCAGGAAGCTGCA
GTGGAAAACGCCTACGCACGGGCCGCTCATCCGGCCCTACCACCCGTACA
AAGAGGCATGGGCCCGACTGCTATCGAAGGTGGCGCACCCG
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