mRNA_Ecto-sp13_S_contig19872.6451.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19872.6451.1
Unique NamemRNA_Ecto-sp13_S_contig19872.6451.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.330e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 QGYVEEVNPERLLETAVGSMLRTLDPYTEYQ 93
            QGYVEEVNPERLLETAVGSMLRTLDPYTEYQ
Sbjct:  310 QGYVEEVNPERLLETAVGSMLRTLDPYTEYQ 340
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BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Match: A0A368UTA5_9BACT (S41A family C-terminal processing peptidase-3 n=3 Tax=Marinilabilia salmonicolor TaxID=989 RepID=A0A368UTA5_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 2.720e-5
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:    7 YVEEVNPERLLETAVGSMLRTLDPYTEY 90
            YVEE NPE L+ET +G+ML +LDPYT Y
Sbjct:   56 YVEETNPEELVETGIGAMLESLDPYTTY 83
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BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC)

HSP 1 Score: 47.0 bits (110), Expect = 6.930e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 QGYVEEVNPERLLETAVGSMLRTLDPYTEYQ 93
            +GYVE+V+ E+L  TAV +MLR+LDPYTE++
Sbjct:  244 RGYVEKVDTEKLFNTAVTAMLRSLDPYTEFE 274
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BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Match: B7GBC3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBC3_PHATC)

HSP 1 Score: 46.6 bits (109), Expect = 9.490e-5
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 QGYVEEVNPERLLETAVGSMLRTLDPYTEYQ 93
            Q YVEEV+  +L ET + +MLR+LDPYTE++
Sbjct:  227 QAYVEEVDTNKLFETGIAAMLRSLDPYTEFE 257
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BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC)

HSP 1 Score: 46.6 bits (109), Expect = 9.500e-5
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    4 GYVEEVNPERLLETAVGSMLRTLDPYTEYQ 93
            GYVE+V+ E+L  TAV +MLR+LDPYTE++
Sbjct:   29 GYVEKVDTEKLFNTAVTAMLRSLDPYTEFE 58
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BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Match: A0A4D9CU61_9STRA (TSPc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU61_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 9.500e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 QGYVEEVNPERLLETAVGSMLRTLDPYTEYQ 93
            +GYVEEV+ ++L E+AV SML +LDPYTE++
Sbjct:  262 RGYVEEVDDQKLFESAVESMLSSLDPYTEFE 292
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BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Match: W7T3X2_9STRA (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3X2_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 9.560e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 QGYVEEVNPERLLETAVGSMLRTLDPYTEYQ 93
            +GYVEEV+ ++L E+AV SML +LDPYTE++
Sbjct:  307 RGYVEEVDDQKLFESAVESMLSSLDPYTEFE 337
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19872.6451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE2.330e-12100.00PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A368UTA5_9BACT2.720e-567.86S41A family C-terminal processing peptidase-3 n=3 ... [more]
A0A0G4F0N3_VITBC6.930e-561.29PDZ domain-containing protein n=3 Tax=Vitrella bra... [more]
B7GBC3_PHATC9.490e-558.06Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A0G4EX77_VITBC9.500e-563.33PDZ domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A4D9CU61_9STRA9.500e-561.29TSPc domain-containing protein n=1 Tax=Nannochloro... [more]
W7T3X2_9STRA9.560e-561.29Carboxyl-terminal protease (Fragment) n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19872contigEcto-sp13_S_contig19872:169..279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score68.6
Seed ortholog evalue7.2e-10
Seed eggNOG ortholog2880.D7FJW2
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Peptidase family S41
EggNOG OGs2RW0A@2759,COG0793@1
Cds size111
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.0583284-CDS-Ecto-sp13_S_contig19872:168..2791681463002.0583284-CDS-Ecto-sp13_S_contig19872:168..279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19872 169..279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19872.6451.1prot_Ecto-sp13_S_contig19872.6451.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19872 169..279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19872.6451.1

>prot_Ecto-sp13_S_contig19872.6451.1 ID=prot_Ecto-sp13_S_contig19872.6451.1|Name=mRNA_Ecto-sp13_S_contig19872.6451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
QGYVEEVNPERLLETAVGSMLRTLDPYTEYQVCFCA*
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mRNA from alignment at Ecto-sp13_S_contig19872:169..279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19872.6451.1 ID=mRNA_Ecto-sp13_S_contig19872.6451.1|Name=mRNA_Ecto-sp13_S_contig19872.6451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19872:169..279+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGTACGTGGAGGAGGTTAATCCGGAGCGCCTCCTGGAGACCGCGGT
GGGATCGATGCTCAGGACACTAGACCCTTACACGGAGTACCAGGTTTGTT
TTTGTGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19872:169..279+

>mRNA_Ecto-sp13_S_contig19872.6451.1 ID=mRNA_Ecto-sp13_S_contig19872.6451.1|Name=mRNA_Ecto-sp13_S_contig19872.6451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19872:169..279+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGTACGTGGAGGAGGTTAATCCGGAGCGCCTCCTGGAGACCGCGGT
GGGATCGATGCTCAGGACACTAGACCCTTACACGGAGTACCAGGTTTGTT
TTTGTGCGTGA
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