mRNA_Ecto-sp13_S_contig10042.65.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10042.65.1
Unique NamemRNA_Ecto-sp13_S_contig10042.65.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A6H5KBQ9_9PHAE (PHB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBQ9_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 2.320e-54
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            +QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQ AMRDGFM
Sbjct:  252 MQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQSAMRDGFM 347
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A6H5KP74_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP74_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.340e-53
Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            +QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQ F+E IDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVA++Q AMRDGFM
Sbjct:   87 MQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFM 182
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: D8LDT1_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT1_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.320e-51
Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            +QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQ F+E IDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVA++Q AMRDGFM
Sbjct:  293 MQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFM 388
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A835YL74_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL74_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.690e-47
Identity = 79/96 (82.29%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            +QVKAAEAEAESKYLSGVGVSRQR+AIV GLRDS+  FS +I+GT+PKDVMDLLLLTQYFDMLRD+GQS++++T+FLPHAP+SVASLQGAMRDGFM
Sbjct:  184 MQVKAAEAEAESKYLSGVGVSRQRQAIVAGLRDSIHDFSSSIEGTTPKDVMDLLLLTQYFDMLRDIGQSTKSSTIFLPHAPESVASLQGAMRDGFM 279
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: F0YP67_AURAN (PHB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP67_AURAN)

HSP 1 Score: 130 bits (327), Expect = 2.190e-36
Identity = 69/96 (71.88%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:   37 QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAA-TVFLPHAPQSVASLQGAMRDGFM 321
            QVKAAEA+AESKYLSGVGV+RQR+AIV GL+DS+  FS  I GT+PKDVMDLLLLTQYFDML+DVG S  +  T+FLPHAP SVA LQ +M+ G M
Sbjct:   74 QVKAAEADAESKYLSGVGVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKDVGASGVSGKTLFLPHAPSSVAELQKSMQSGLM 169
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A7S4IJZ4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IJZ4_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 2.840e-36
Identity = 61/94 (64.89%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:   40 VKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            VKAAEA+AESKYLSGVG++RQRKAIV+GL++SV TF+++++GTS KDVMDL+L+TQYFD L+D+G +S+++T+F+PH+P SV S+   +RDGFM
Sbjct:  186 VKAAEADAESKYLSGVGIARQRKAIVEGLQESVTTFADSVEGTSAKDVMDLVLVTQYFDTLKDLGSNSKSSTIFIPHSPGSVGSVAEQVRDGFM 279
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A6S8S5L6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S5L6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.950e-35
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQS-SRAATVFLPHAPQSVASLQGAMRDGFM 321
            VQVKAAEA+AESKYLSGVGV+RQR+AIV GL+DS+  FS  I GT+PKDVMDLLLLTQYFDML+DVG S S   T+FLPHAP +V  LQ ++++G M
Sbjct:  185 VQVKAAEADAESKYLSGVGVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKDVGSSGSGGKTLFLPHAPSAVGDLQDSLKNGLM 281
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: W7TM34_9STRA (Hypersensitive-induced response protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM34_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.540e-34
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            VQVKAAEA AESKYL+G+G++R+RKAIVDGLR SV+ FSET++G +PKDVMDL+LLTQYFDML+DVG +    T+F+ H P +V  L+  +R G M
Sbjct:  184 VQVKAAEASAESKYLNGMGIARERKAIVDGLRGSVEEFSETVEGATPKDVMDLILLTQYFDMLKDVGNNPTPTTLFMTHGPSAVTELKEQLRAGIM 279
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A816WVN1_BRANA ((rape) hypothetical protein n=2 Tax=Brassica TaxID=3705 RepID=A0A816WVN1_BRANA)

HSP 1 Score: 124 bits (311), Expect = 1.570e-34
Identity = 57/96 (59.38%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            +Q+K AE EAESKYLSG+G++RQR+AIVDGLR+SV  FSE++ GTS KDVMD++L+TQYFD L+D+G SS++  VF+PH P +V  +   +RDG +
Sbjct:   27 LQIKRAEGEAESKYLSGLGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVTQYFDTLKDIGASSKSNAVFIPHGPGAVKDIASQIRDGLL 122
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BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A699WBP0_TANCI (Uncharacterized protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699WBP0_TANCI)

HSP 1 Score: 123 bits (309), Expect = 1.600e-34
Identity = 56/96 (58.33%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:   34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
            +Q+K AE EAESKYLSG+G++RQR+AIVD LRDSV  FSE + GTS KDVMD++L+TQYFD ++D+G SS+++ VF+PH P +V  +   +RDG +
Sbjct:    5 LQIKRAEGEAESKYLSGLGIARQRQAIVDSLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKDIGASSKSSAVFIPHGPGAVKDIADQIRDGLL 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBQ9_9PHAE2.320e-5497.92PHB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KP74_9PHAE1.340e-5392.71PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDT1_ECTSI3.320e-5192.71PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YL74_9STRA1.690e-4782.29Flagellar associated protein n=1 Tax=Tribonema min... [more]
F0YP67_AURAN2.190e-3671.88PHB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S4IJZ4_9EUKA2.840e-3664.89Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6S8S5L6_9STRA2.950e-3570.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TM34_9STRA1.540e-3463.54Hypersensitive-induced response protein n=1 Tax=Na... [more]
A0A816WVN1_BRANA1.570e-3459.38(rape) hypothetical protein n=2 Tax=Brassica TaxID... [more]
A0A699WBP0_TANCI1.600e-3458.33Uncharacterized protein (Fragment) n=1 Tax=Tanacet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10042contigEcto-sp13_S_contig10042:33..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score186.0
Seed ortholog evalue8.9e-45
Seed eggNOG ortholog2880.D8LDT0
Preferred nameHIR1
Model size321
KEGG koko:K03129
KEGG Pathwayko03022,ko05016,ko05168,map03022,map05016,map05168
Hectar predicted targeting categorysignal peptide
GOsGO:0002239,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0012505,GO:0016020,GO:0019899,GO:0019900,GO:0019901,GO:0030054,GO:0031090,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043424,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055044,GO:0071944,GO:0098588,GO:0098805
Exons2
EggNOG free text desc.stress-induced mitochondrial fusion
EggNOG OGsCOG0330@1,KOG2620@2759
Cds size321
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462502.9829593-CDS-Ecto-sp13_S_contig10042:32..1951681462502.9829593-CDS-Ecto-sp13_S_contig10042:32..195Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10042 33..195 +
1681462502.9972544-CDS-Ecto-sp13_S_contig10042:821..9791681462502.9972544-CDS-Ecto-sp13_S_contig10042:821..979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10042 822..979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10042.65.1prot_Ecto-sp13_S_contig10042.65.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10042 33..979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10042.65.1

>prot_Ecto-sp13_S_contig10042.65.1 ID=prot_Ecto-sp13_S_contig10042.65.1|Name=mRNA_Ecto-sp13_S_contig10042.65.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
VACPLFLSFFRVQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFS
ETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQG
AMRDGFM
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mRNA from alignment at Ecto-sp13_S_contig10042:33..979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10042.65.1 ID=mRNA_Ecto-sp13_S_contig10042.65.1|Name=mRNA_Ecto-sp13_S_contig10042.65.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=947bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10042:33..979+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGTGTCCTCTCTTTCTTTCTTTTTTCCGCGTGCAGGTGAAGGCGGC
TGAGGCAGAGGCAGAGTCCAAGTACCTGTCCGGCGTGGGTGTGTCCAGGC
AGCGCAAGGCCATCGTGGACGGTCTCCGCGACTCCGTGCAGACCTTCTCC
GAAACCATCGACGGTGGGTTTTGGGTCACGTTATCGGAGCACACAAGAGC
CCGCACACAAGGGCGTTCTTATGGTAGAGCATGTTCGTCTGTTGACGCAG
CTGTTGGCGTCCGGGGGTGGGATTGGTGGCGCGGTGGTAGTAGCCGTTGC
GCTTGGAAGAAGTGTCGTTTCCCCGCGTGTTCTGTTTTCATGTCGCCTTT
TGTGTCGACTCGGTTTTCGTCCCGACCTGCGAAGGCGTTGTCTTTTGCTG
TCTTGGTTGGTGGGCTTTTTTGCGTAGCCTGCCCAAGGGGTTGGCATGCC
GGATCCCCTCACGCCCGTCATATAAGAGTGTTAGGTTGGGACCGAGGAGT
TGCGCCTACATATGCGCCGTGGTGGTTGCGGGAAACACGCGCAAAATCGC
TTCTTCCTTCGACTACTTGGGCTTTAGCTGCACAGAGCTAAGAATGCGTG
CTCATTGCTTTTTAGGAGCAAAATAAACGTCAAGGTTTTTTATCCTCCCC
CTCCGTTGCTTCTCTGCAGGAACTATCCTGTTGCCTCTTCCCTCCTCCGC
TTTGGCTTCATCTTTTTTTATTGCGTTTTTTTGGCACGGACGTTGACCGG
AATTTTTTTGCCCTCTCGTCCTGCATGTCATTGCTGCAGGGACTTCGCCG
AAGGATGTAATGGATCTGCTTCTCCTGACCCAGTACTTCGACATGCTCCG
CGACGTGGGCCAGTCCTCCCGCGCGGCGACGGTGTTCCTGCCTCACGCGC
CGCAGTCTGTGGCCTCCTTGCAGGGCGCCATGCGCGATGGCTTCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10042:33..979+

>mRNA_Ecto-sp13_S_contig10042.65.1 ID=mRNA_Ecto-sp13_S_contig10042.65.1|Name=mRNA_Ecto-sp13_S_contig10042.65.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10042:33..979+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGTGTCCTCTCTTTCTTTCTTTTTTCCGCGTGCAGGTGAAGGCGGC
TGAGGCAGAGGCAGAGTCCAAGTACCTGTCCGGCGTGGGTGTGTCCAGGC
AGCGCAAGGCCATCGTGGACGGTCTCCGCGACTCCGTGCAGACCTTCTCC
GAAACCATCGACGGGACTTCGCCGAAGGATGTAATGGATCTGCTTCTCCT
GACCCAGTACTTCGACATGCTCCGCGACGTGGGCCAGTCCTCCCGCGCGG
CGACGGTGTTCCTGCCTCACGCGCCGCAGTCTGTGGCCTCCTTGCAGGGC
GCCATGCGCGATGGCTTCATG
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