mRNA_Ecto-sp13_S_contig19857.6443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19857.6443.1
Unique NamemRNA_Ecto-sp13_S_contig19857.6443.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: D7G933_ECTSI (Possible metalloprotease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G933_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 8.210e-59
Identity = 135/238 (56.72%), Postives = 147/238 (61.76%), Query Frame = 2
Query:   62 WPWKNPQGILV*RGHPTLPR----LLVPNGLQQVMVMSDPNATKAAEAMSVDVGAASDPVA-PGLAHFLEHMPFLGERTYIVQRRYAT--------EKASAARRDIRHSRGSRWRQLRRPASAPRRLPTGLSSGTRR*RSLQRSPLPLLLLPLRPPGGSSTSGSNLRRSGPSSL-----PXXXXXXXXXXXXXXXXXXXXXXXXRCRRGSSRPYPAADTQARRWRGRSPALATNGRMK 721
            WPWKNPQGILV    P   R    LL+PNGLQ VMV+SDPNA KAA AMSVDVGAA DPV  PGLAHFLEHM FLG   Y ++  Y +          ASAARRDIR SRGSRWRQLRRPASAPRRLPT LSSG R  RS +RS LPL      P   S+ +  + +R   S L     P                        RCRRGS+RP+PAADTQA RWRGRSPALAT GR K
Sbjct:    3 WPWKNPQGILV---SPVEKRHYRWLLLPNGLQ-VMVISDPNANKAAAAMSVDVGAAPDPVGLPGLAHFLEHMAFLGTSKYPLENAYKSYLAKHGDRSNASAARRDIRLSRGSRWRQLRRPASAPRRLPTSLSSGARPQRSRRRSNLPL------PAAPSTNTVWHHQRQQSSPLRTVVPPGKSEPITPADLAPSPTSRWHPRRLRCRRGSTRPHPAADTQASRWRGRSPALATTGRTK 230          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: D7G8Z5_ECTSI (Peptidase_M16 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z5_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.990e-28
Identity = 68/95 (71.58%), Postives = 71/95 (74.74%), Query Frame = 2
Query:   35 EPLAAALEAWPWKNPQGILV*RGHPTLPR----LLVPNGLQQVMVMSDPNATKAAEAMSVDVGAASDPVA-PGLAHFLEHMPFLGERTYIVQRRY 304
            EPLA ALEAWPWKNPQGILV    P   R    LL+PNGLQ VMV+SDPNA KAA AMSVDVGAASDPV  PGLAHFLEHM FLG   Y V+  Y
Sbjct:    4 EPLAEALEAWPWKNPQGILV---SPMDKRHYRWLLLPNGLQ-VMVISDPNANKAAAAMSVDVGAASDPVGLPGLAHFLEHMLFLGTSKYPVENAY 94          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: A0A6H5KRX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.250e-25
Identity = 69/96 (71.88%), Postives = 72/96 (75.00%), Query Frame = 2
Query:   35 EPLAAALEAWPWKNPQGILV*RGHPTLPR----LLVPNGLQ-QVMVMSDPNATKAAEAMSVDVGAASDPVA-PGLAHFLEHMPFLGERTYIVQRRY 304
            EPLAAALEAWPWKNPQGILV    P   R    LL+PNGLQ  VMV+SDPNA KAA AMSVDVGAASDPV  PGLAHFLEHM FLG   Y V+  Y
Sbjct:  135 EPLAAALEAWPWKNPQGILV---SPMDKRHYRWLLLPNGLQVMVMVISDPNANKAAAAMSVDVGAASDPVGLPGLAHFLEHMLFLGTSKYPVENAY 227          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: D7G8Z3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.050e-22
Identity = 78/146 (53.42%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  289 STKAIRHRKSVGGPKGHKALAGESVAATATTSISAATTADRTIKRHKTVKKPSKKPASAVAAPFTTAGWQQHQRQQSPPLRTVFPPVKSELVTTADLAPSPTPAVAPASPSLSKR*QPAVPGRRHPSQEVARKEPRPRHQRKDEDA 726
            S + +   +   GPKGHK   GESVAAT TTSIS+ TTAD+ IKR KT KK                            L    PP KSE +T A LA S T AVAPASPSLSKR QPA PGRR+ SQ+VARKEPR RHQRKDE A
Sbjct:   51 SIRCVYSTRQKSGPKGHK-TPGESVAATVTTSISSTTTADKPIKRCKTSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTVPPGKSEPITPAALALSATAAVAPASPSLSKRQQPAAPGRRYASQQVARKEPRLRHQRKDEAA 195          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: A0A6H5JWH9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.410e-14
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 1
Query:  565 TTADLAPSPTPAVAPASPSLSKR*QPAVPGRRHPSQEVARKEPRPRHQRKDEDAKKIPA 741
            T ADLAPSPT  VAPASPSLSK  Q A PGRRHPSQ+VARKEPRPRH RKD D K+IPA
Sbjct:  135 TPADLAPSPTAPVAPASPSLSKGQQLAAPGRRHPSQQVARKEPRPRHHRKDADGKEIPA 193          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: A0A836CLR7_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.090e-9
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 2
Query:   50 ALEAWPWKNPQGILV*R-GHPTLPRLLVPNGLQQVMVMSDPNATKAAEAMSVDVGAASDP-VAPGLAHFLEHMPFLGERTYIVQRRY 304
            AL +WPW+  QG+L     H     + + NGL+ V+++ D  A KAA AM+V+VGAASDP + PGLAHF EHM FLG   Y  +  Y
Sbjct:  245 ALASWPWRTEQGLLKSSLDHRDYKYVTLCNGLK-VLLVHDHKADKAAAAMAVNVGAASDPDLMPGLAHFCEHMLFLGTGKYPTENAY 330          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: A0A6H5K1X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.970e-8
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  628 KR*QPAVPGRRHPSQEVARKEPRPRHQRKDEDAKKIPA 741
            KR QPA PGRRHPSQEVARKEPRPRH RKDED K+IPA
Sbjct:    2 KRQQPAAPGRRHPSQEVARKEPRPRHHRKDEDGKEIPA 39          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: A0A7S2XZ77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ77_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.610e-8
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 2
Query:   62 WPWKNPQGILV*RGHPTLPRLL-VPNGLQQVMVMSDPNATKAAEAMSVDVGAASDPV-APGLAHFLEHMPFLGERTYIVQRRY 304
            W W N QG+LV        ++  + NG++ V+V SDP   KAA +++V  GA SDP   PGLAHF EHM FLG  T+ V   Y
Sbjct:   15 WTWTNGQGVLVSPQDDRKYKVFKLDNGIEGVLV-SDPKTKKAAASLAVGAGAGSDPSDIPGLAHFCEHMLFLGTETFPVTNAY 96          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: L1IPS8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPS8_GUITC)

HSP 1 Score: 61.6 bits (148), Expect = 3.090e-7
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  125 LVPNGLQQVMVMSDPNATKAAEAMSVDVGAASDPVA-PGLAHFLEHMPFLGERTYIVQRRYAT 310
            ++PNGL+ V+ +SDP A +AA +M V VG+ SDP A PGLAHFLEHM F+G + Y  + +Y++
Sbjct:   12 ILPNGLK-VLTVSDPTADRAAASMDVSVGSFSDPEAFPGLAHFLEHMLFMGSKKYPDENQYSS 73          
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Match: A0A226DHR3_FOLCA (Insulin-degrading enzyme n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DHR3_FOLCA)

HSP 1 Score: 58.2 bits (139), Expect = 4.440e-7
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  122 LLVPNGLQQVMVMSDPNATKAAEAMSVDVGAASDPVA-PGLAHFLEHMPFLGERTY 286
            +L+PNG++ ++V SDPN TKAA A+SV VG+ +DP    G+AHFLEHM FLG + Y
Sbjct:   59 VLLPNGMKVILV-SDPNTTKAAAALSVSVGSINDPDDFLGMAHFLEHMLFLGSQKY 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19857.6443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G933_ECTSI8.210e-5956.72Possible metalloprotease n=1 Tax=Ectocarpus silicu... [more]
D7G8Z5_ECTSI8.990e-2871.58Peptidase_M16 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KRX7_9PHAE1.250e-2571.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8Z3_ECTSI2.050e-2253.42Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JWH9_9PHAE1.410e-1479.66Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836CLR7_9STRA2.090e-948.28Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A6H5K1X2_9PHAE1.970e-886.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XZ77_9STRA2.610e-845.78Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
L1IPS8_GUITC3.090e-752.38Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A226DHR3_FOLCA4.440e-757.14Insulin-degrading enzyme n=1 Tax=Folsomia candida ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19857contigEcto-sp13_S_contig19857:1353..3225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score125.9
Seed ortholog evalue9.8e-27
Seed eggNOG ortholog2880.D7G933
Model size742
KEGG koko:K01408
KEGG Pathwayko05010,map05010
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
EC3.4.24.56
Cds size285
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.473533-UTR-Ecto-sp13_S_contig19857:1352..16581681463001.473533-UTR-Ecto-sp13_S_contig19857:1352..1658Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19857 1353..1658 -
1681463001.512115-UTR-Ecto-sp13_S_contig19857:2703..27091681463001.512115-UTR-Ecto-sp13_S_contig19857:2703..2709Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19857 2704..2709 -
1681463001.5205915-UTR-Ecto-sp13_S_contig19857:3080..32251681463001.5205915-UTR-Ecto-sp13_S_contig19857:3080..3225Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19857 3081..3225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.4865572-CDS-Ecto-sp13_S_contig19857:1658..17931681463001.4865572-CDS-Ecto-sp13_S_contig19857:1658..1793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19857 1659..1793 -
1681463001.5010252-CDS-Ecto-sp13_S_contig19857:2553..27031681463001.5010252-CDS-Ecto-sp13_S_contig19857:2553..2703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19857 2554..2703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19857.6443.1prot_Ecto-sp13_S_contig19857.6443.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19857 1659..2703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19857.6443.1

>prot_Ecto-sp13_S_contig19857.6443.1 ID=prot_Ecto-sp13_S_contig19857.6443.1|Name=mRNA_Ecto-sp13_S_contig19857.6443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MVMSDPNATKAAEAMSVDVGAASDPVAPGLAHFLEHMPFLGERTYIVQRR
YATEKASAARRDIRHSRGSRWRQLRRPASAPRRLPTGLSSGTRR*
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mRNA from alignment at Ecto-sp13_S_contig19857:1353..3225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19857.6443.1 ID=mRNA_Ecto-sp13_S_contig19857.6443.1|Name=mRNA_Ecto-sp13_S_contig19857.6443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19857:1353..3225- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGGCTGTTTTGCAACGTTTTGTCATGTCTCAGAGCCTCTTGCAGCGG CGCTTGAGGCATGGCCCTGGAAGAATCCTCAAGGAATCCTCGTGTAGCGT GGACATCCGACATTACCGAGGCTGCTCGTGCCCAACGGTCTGCAGGTCCG GGTGCTTGGTTGATTTATTTTTTGGACCGTTTCTGCTACATGCGTTACCC ACGTTGCTTTGGCTGGTCAGTCGCTTGTATCTACTTGTGGCTGTGGTTTT ATGGCACAAGAAGACATAACTGAATACTGATGTCAATGCCAGACTTAACT AAACCCCCGACGATGTAGACTCTTTTGTGTGTGGCGGCGCAAGTGCTAAT CCCCTGGCTCCGAGGCCCGGACCCTCACGAACTCTTAGCACTACCCCGGC AGTCTGATAAGCTCAACAATTTTTTGTCAAACGGAGCTCAAACCACAAGA TTTGGCTGTTGACGCAAGTGGACCCAGCTCATAGAAGCAACCGCAATCTG TGGGCCTATACACTAGCAGGTGATGGTCATGAGCGACCCGAACGCCACCA AAGCTGCAGAGGCGATGTCGGTGGACGTAGGAGCAGCATCGGACCCGGTG GCTCCTGGCCTAGCGCACTTCCTCGAGCACATGCCTTTCCTAGGTGAGCG AACGTACATAGTACAAAGGCGAGTCTGAGGCTCCGAAACGTAGGAGTAGA GATAGCGTCAGGTGAGCCGCTGCCACGCGAATTGCCACACAGCCAGTCCC GCTCTACACCCGGGCGCCAACCACGGCCAGGAAGTGACGCCCGGAAGTGA GCTTTCTCGTGGTGGCCGAATTCTCGTAGGTAGCAACTGGCTGTTTTAGG TAGCAACTGGCTGTTTTAGCGGCAATTAGTAAGTGTGTTCGTTTTTCGAC GGGTGTCGTTCCATGGTGTCGGTCGGTGACTAGGCTGTTGTGGTTGCTGC TGCTGCTGCTGCTACTGCTGCTGTAGGGCTGGAGAGCGGGGAAGTGTTCG TATCTTTGCGGCATTTTCTCCCATGATTTCTGAATGCGAATCACGGGCAT TCCGCCGTCTGAGCCCACGGTGAACCTCGGTGAGTGCTCTGCATTCAGTG AGCGACGAGGAGAGATAAAGAAGCCGAAATCAACCATTAGACTATAGTCA GCGCTGACCAAGATCCTCATCAAGTTCAGGACGTTGTCACTCGCACTGCT GTTCCTCGTCGGTGTTGTCTTCAAATTTATATTGACCGAGATTATGTCAT CGAGGGCACCCGAGATTGGGTGAAGTTTCCTTGTATGTACCCGTTTAGAT CACATGTAGAGGGCACTGATTGGTTAGGAGGATTTGAACGACTTCAAGGC GGCAGAGAGAGGAGAGCAGGGTGATTGATCCTCCCTTATCTTCCTTGTCG CGTCCACGCGTGGAAACGCAGGCACATCCAAGTACGCCACCGAAAAAGCG TCGGCGGCCCGAAGGGACATAAGGCACTCGCGGGGGAGTCGGTGGCGGCA ACTGCGACGACCAGCATCAGCGCCGCGACGACTGCCGACAGGACTATCAA GCGGCACAAGACGGTAAAGAAGCCTTCAAAGAAGCCCGCTTCCGCTGTTG CTGCTCCCTTTACGACCGCCGGGTGGCAGCAGCACCAGCGGCAGCAATCT CCGCCGCTCAGGACCGTCTTCCCTCCCGTCAAGTCGGAGCTCGTCACAAC GGCTGATCTCGCACCCTCTCCGACGCCCGCGGTGGCGCCCGCGTCGCCGT CGTTGTCGAAGAGGTAGCAGCCGGCCGTACCCGGCCGCCGACACCCAAGC CAGGAGGTGGCGAGGAAGGAGCCCCGCCCTCGCCACCAACGGAAGGATGA AGATGCGAAGAAGATCCCTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19857:1353..3225-

>mRNA_Ecto-sp13_S_contig19857.6443.1 ID=mRNA_Ecto-sp13_S_contig19857.6443.1|Name=mRNA_Ecto-sp13_S_contig19857.6443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19857:1353..3225- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCATGAGCGACCCGAACGCCACCAAAGCTGCAGAGGCGATGTCGGT
GGACGTAGGAGCAGCATCGGACCCGGTGGCTCCTGGCCTAGCGCACTTCC
TCGAGCACATGCCTTTCCTAGGTGAGCGAACGTACATAGTACAAAGGCGA
TACGCCACCGAAAAAGCGTCGGCGGCCCGAAGGGACATAAGGCACTCGCG
GGGGAGTCGGTGGCGGCAACTGCGACGACCAGCATCAGCGCCGCGACGAC
TGCCGACAGGACTATCAAGCGGCACAAGACGGTAA
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