mRNA_Ecto-sp13_S_contig1984.6435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1984.6435.1
Unique NamemRNA_Ecto-sp13_S_contig1984.6435.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1984.6435.1 vs. uniprot
Match: D8LI91_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI91_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.020e-6
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    4 KSQSICLSVYNTTLLGLVNVVMYLLVNDNPVARSCM--RSFSAVWGTAFTISAVFGPKALKVRTKSICPCRPS 216
            +SQ ICL VYNTTLLGL+N+ + + + D  VA   +   +F+ + GT F +S +F PK  ++      P  P+
Sbjct:  109 ESQPICLCVYNTTLLGLINLGLQVFLEDTSVAVIGVGASAFTLIGGTVFAVSVLFVPKVYQLWMYGDLPANPA 181
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BLAST of mRNA_Ecto-sp13_S_contig1984.6435.1 vs. uniprot
Match: A0A369RXT3_9METZ (Gamma-aminobutyric acid type B receptor subunit 2 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RXT3_9METZ)

HSP 1 Score: 48.9 bits (115), Expect = 6.920e-5
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    1 NKSQSICLSVYNTTLLGLVNVVMYLLVNDNPVARSCMRSFSAVWGTAFTISAVFGPKALKVRTKS 195
            N S  I LS+YNTTLL ++ +++ +L+ +N  A   + S   ++G   T+  VF PKA K+R K+
Sbjct:  660 NDSHYIGLSIYNTTLLCVIGIIVSMLLGNNVNAGFAVTSGFIIFGVTVTMCLVFVPKAAKLRVKA 724
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1984.6435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI91_ECTSI2.020e-638.36G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A369RXT3_9METZ6.920e-538.46Gamma-aminobutyric acid type B receptor subunit 2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1984contigEcto-sp13_S_contig1984:14726..14944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.8498335-CDS-Ecto-sp13_S_contig1984:14725..149441681463000.8498335-CDS-Ecto-sp13_S_contig1984:14725..14944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 14726..14944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1984.6435.1prot_Ecto-sp13_S_contig1984.6435.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1984 14726..14944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1984.6435.1

>prot_Ecto-sp13_S_contig1984.6435.1 ID=prot_Ecto-sp13_S_contig1984.6435.1|Name=mRNA_Ecto-sp13_S_contig1984.6435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
NKSQSICLSVYNTTLLGLVNVVMYLLVNDNPVARSCMRSFSAVWGTAFTI
SAVFGPKALKVRTKSICPCRPS*
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mRNA from alignment at Ecto-sp13_S_contig1984:14726..14944-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1984.6435.1 ID=mRNA_Ecto-sp13_S_contig1984.6435.1|Name=mRNA_Ecto-sp13_S_contig1984.6435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1984:14726..14944- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGTCGCAATCGATCTGCTTGTCGGTGTACAATACCACGCTGCTTGG
TCTGGTGAACGTGGTAATGTACCTGCTGGTCAACGACAACCCTGTCGCGA
GGTCGTGCATGCGGAGCTTCTCGGCTGTCTGGGGGACGGCATTCACCATA
TCTGCGGTGTTCGGACCCAAGGCTTTAAAGGTTCGAACCAAAAGCATCTG
TCCGTGCAGACCCTCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1984:14726..14944-

>mRNA_Ecto-sp13_S_contig1984.6435.1 ID=mRNA_Ecto-sp13_S_contig1984.6435.1|Name=mRNA_Ecto-sp13_S_contig1984.6435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1984:14726..14944- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGTCGCAATCGATCTGCTTGTCGGTGTACAATACCACGCTGCTTGG
TCTGGTGAACGTGGTAATGTACCTGCTGGTCAACGACAACCCTGTCGCGA
GGTCGTGCATGCGGAGCTTCTCGGCTGTCTGGGGGACGGCATTCACCATA
TCTGCGGTGTTCGGACCCAAGGCTTTAAAGGTTCGAACCAAAAGCATCTG
TCCGTGCAGACCCTCCTAA
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