prot_Ecto-sp13_S_contig1984.6435.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1984.6435.1
Unique Name	prot_Ecto-sp13_S_contig1984.6435.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	73

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1984.6435.1 vs. uniprot
Match: D8LI91_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI91_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.020e-6
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 0

Query:    2 KSQSICLSVYNTTLLGLVNVVMYLLVNDNPVARSCM--RSFSAVWGTAFTISAVFGPKALKVRTKSICPCRPS 72
            +SQ ICL VYNTTLLGL+N+ + + + D  VA   +   +F+ + GT F +S +F PK  ++      P  P+
Sbjct:  109 ESQPICLCVYNTTLLGLINLGLQVFLEDTSVAVIGVGASAFTLIGGTVFAVSVLFVPKVYQLWMYGDLPANPA 181

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1984.6435.1 vs. uniprot
Match: A0A369RXT3_9METZ (Gamma-aminobutyric acid type B receptor subunit 2 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RXT3_9METZ)

HSP 1 Score: 48.9 bits (115), Expect = 6.920e-5
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 0

Query:    1 NKSQSICLSVYNTTLLGLVNVVMYLLVNDNPVARSCMRSFSAVWGTAFTISAVFGPKALKVRTKS 65
            N S  I LS+YNTTLL ++ +++ +L+ +N  A   + S   ++G   T+  VF PKA K+R K+
Sbjct:  660 NDSHYIGLSIYNTTLLCVIGIIVSMLLGNNVNAGFAVTSGFIIFGVTVTMCLVFVPKAAKLRVKA 724

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1984.6435.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1984.6435.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LI91_ECTSI	2.020e-6	38.36	G_PROTEIN_RECEP_F3_4 domain-containing protein n=1...	[more]
A0A369RXT3_9METZ	6.920e-5	38.46	Gamma-aminobutyric acid type B receptor subunit 2 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..38
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..27
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 57..72
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..56
None	No IPR available	TMHMM	TMhelix		coord: 42..61
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1984	contig	Ecto-sp13_S_contig1984:14726..14944 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1984.6435.1	mRNA_Ecto-sp13_S_contig1984.6435.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1984 14726..14944 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1984.6435.1 ID=prot_Ecto-sp13_S_contig1984.6435.1|Name=mRNA_Ecto-sp13_S_contig1984.6435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
NKSQSICLSVYNTTLLGLVNVVMYLLVNDNPVARSCMRSFSAVWGTAFTI
SAVFGPKALKVRTKSICPCRPS*