mRNA_Ecto-sp13_S_contig19838.6432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19838.6432.1
Unique NamemRNA_Ecto-sp13_S_contig19838.6432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.620e-50
Identity = 85/92 (92.39%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 282
             C     PFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFV+
Sbjct:  547 MCRENSWPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVS 638
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A1V9YCP2_9STRA (DNA repair and recombination protein RAD54 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YCP2_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.850e-44
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFV 279
             C     P VRLDGST  SKR K+V+ FN+P   SFAFLLSSKAGGCGLNLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV
Sbjct:    8 LCRERGLPSVRLDGSTSASKRMKLVDVFNDPKTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFV 98
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A0V0HUJ3_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HUJ3_SOLCH)

HSP 1 Score: 151 bits (381), Expect = 1.010e-43
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 282
             C     PF+RLDG+T +SKRQK+VN FN+P    FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   57 LCRERRYPFLRLDGTTSISKRQKLVNHFNDPAKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 148
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A5B6YH93_DAVIN (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YH93_DAVIN)

HSP 1 Score: 150 bits (378), Expect = 4.370e-43
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 282
             C     PF+RLDG+T +SKRQK+VN FN+P    F FLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   33 LCRERRYPFLRLDGTTSISKRQKLVNRFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 124
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A151RRA8_CAJCA (Helicase C-terminal domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RRA8_CAJCA)

HSP 1 Score: 150 bits (379), Expect = 2.400e-42
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVTA 285
             C     P +RLDG+T +SKRQKMVN FN+P    F FLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++A
Sbjct:    9 LCRERRYPHLRLDGTTSISKRQKMVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSA 101
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: UPI001FB080BD (protein CHROMATIN REMODELING 25-like n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB080BD)

HSP 1 Score: 150 bits (380), Expect = 6.970e-42
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 282
             C     PF+RLDG+T +SKRQK+VN FN+P    FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   57 LCRERRYPFLRLDGTTSISKRQKLVNRFNDPTKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 148
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A2G3B2U3_CAPCH (DNA repair and recombination protein RAD54 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3B2U3_CAPCH)

HSP 1 Score: 152 bits (383), Expect = 7.130e-42
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 282
             C     PF+RLDG+T +SKRQK++N FN+P    FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:  263 LCRERRHPFLRLDGTTSISKRQKLINRFNDPAKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 354
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A7S4QD60_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QD60_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.030e-41
Identity = 68/91 (74.73%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFV 279
             C   +  F RLDGS  + KRQKMV+ FN+P     AFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF+
Sbjct:   83 MCRENNWGFCRLDGSITMKKRQKMVDEFNDPSTPLIAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFL 173
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A2C9VLL7_MANES (Helicase C-terminal domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VLL7_MANES)

HSP 1 Score: 148 bits (374), Expect = 1.680e-41
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 282
             C     P+VRLDG+T + KRQK+VN FN+P    F FLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   14 LCRERRYPYVRLDGTTSIGKRQKLVNRFNDPAKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 105
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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A453PN85_AEGTS (Helicase C-terminal domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PN85_AEGTS)

HSP 1 Score: 147 bits (370), Expect = 1.870e-41
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    7 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 282
             C     P+VRLDGST ++KRQK+VN FN+     FAFLLSSKAGGCGLNL+GGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:  187 LCRERRYPYVRLDGSTSINKRQKLVNQFNDLSRDEFAFLLSSKAGGCGLNLVGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSB9_9PHAE3.620e-5092.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9YCP2_9STRA2.850e-4474.73DNA repair and recombination protein RAD54 (Fragme... [more]
A0A0V0HUJ3_SOLCH1.010e-4375.00Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A5B6YH93_DAVIN4.370e-4373.91Helicase C-terminal domain-containing protein (Fra... [more]
A0A151RRA8_CAJCA2.400e-4274.19Helicase C-terminal domain-containing protein n=1 ... [more]
UPI001FB080BD6.970e-4275.00protein CHROMATIN REMODELING 25-like n=1 Tax=Capsi... [more]
A0A2G3B2U3_CAPCH7.130e-4273.91DNA repair and recombination protein RAD54 n=1 Tax... [more]
A0A7S4QD60_9STRA1.030e-4174.73Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A2C9VLL7_MANES1.680e-4172.83Helicase C-terminal domain-containing protein n=1 ... [more]
A0A453PN85_AEGTS1.870e-4172.83Helicase C-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19838contigEcto-sp13_S_contig19838:663..1343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score177.9
Seed ortholog evalue2.2e-42
Seed eggNOG ortholog2880.D7FYB3
Preferred nameRAD54L
Model size285
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.DNA repair and recombination protein
EggNOG OGsCOG0553@1,KOG0390@2759
Cds size285
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.6366453-CDS-Ecto-sp13_S_contig19838:662..8161681463000.6366453-CDS-Ecto-sp13_S_contig19838:662..816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19838 663..816 -
1681463000.6489546-CDS-Ecto-sp13_S_contig19838:1212..13431681463000.6489546-CDS-Ecto-sp13_S_contig19838:1212..1343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19838 1213..1343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19838.6432.1prot_Ecto-sp13_S_contig19838.6432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19838 663..1343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19838.6432.1

>prot_Ecto-sp13_S_contig19838.6432.1 ID=prot_Ecto-sp13_S_contig19838.6432.1|Name=mRNA_Ecto-sp13_S_contig19838.6432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
IPFCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCG
LNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVTA
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mRNA from alignment at Ecto-sp13_S_contig19838:663..1343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19838.6432.1 ID=mRNA_Ecto-sp13_S_contig19838.6432.1|Name=mRNA_Ecto-sp13_S_contig19838.6432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19838:663..1343- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCCCTTTTGTCCACGCTTGGACAGGCCGTTCGTGCGATTGGACGGGAG
CACGGGGGTGTCGAAGCGGCAGAAGATGGTGAACGCGTTCAACGAACCCG
GCCCTCAGAGCTTCGCCTTCCTTCTGTCCAGGTCCGGCGCTGTTGCTGTT
GCTGTTGCAGTTGTTGTCGTTGTTGTTTTTTGTCGTTGCACTGTTATTGT
TCGATGCTGTGACCAGGGGTTGGAGTAAATGGCGTTAGTACTGTGAGCGC
TGATTTGAAGAGAAGACAAAAAAACAAAAAAAACTAATATTGTTCGATGC
TGCTGGTGCTGGTGCTGTTGTTGTTGACCAGCATCTGGTACATGTTTGTG
AACCATACTAGAAGCTTTAGCCGGCCAAAACCCGGCATATCGCTCTGTCC
TTGCATGGTCTAACGACTGATTGCGACATTCATTGACATGGTTACACCCC
CTCCCATCGCCGACACCCTTTCCCACACACTAGTCTAACCCCCATCCCCT
CGTTGCCGCTTCGCTCTGCTCTGCCAGCAAAGCGGGAGGGTGCGGACTCA
ACCTGATCGGTGGCAACCGGCTGGTGCTGTTCGACCCGGACTGGAACCCC
GCGGTGGACAAGCAGGCGGCGGCGAGGGTCTGGCGCGACGGGCAGAAGAA
GCGTTGTTTCGTGTACAGGTTTGTCACGGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19838:663..1343-

>mRNA_Ecto-sp13_S_contig19838.6432.1 ID=mRNA_Ecto-sp13_S_contig19838.6432.1|Name=mRNA_Ecto-sp13_S_contig19838.6432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19838:663..1343- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCCCTTTTGTCCACGCTTGGACAGGCCGTTCGTGCGATTGGACGGGAG
CACGGGGGTGTCGAAGCGGCAGAAGATGGTGAACGCGTTCAACGAACCCG
GCCCTCAGAGCTTCGCCTTCCTTCTGTCCAGCAAAGCGGGAGGGTGCGGA
CTCAACCTGATCGGTGGCAACCGGCTGGTGCTGTTCGACCCGGACTGGAA
CCCCGCGGTGGACAAGCAGGCGGCGGCGAGGGTCTGGCGCGACGGGCAGA
AGAAGCGTTGTTTCGTGTACAGGTTTGTCACGGCT
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