prot_Ecto-sp13_S_contig19838.6432.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig19838.6432.1
Unique Name	prot_Ecto-sp13_S_contig19838.6432.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	95

Homology

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.620e-50
Identity = 85/92 (92.39%), Postives = 86/92 (93.48%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 94
             C     PFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFV+
Sbjct:  547 MCRENSWPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVS 638

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A1V9YCP2_9STRA (DNA repair and recombination protein RAD54 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YCP2_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.850e-44
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFV 93
             C     P VRLDGST  SKR K+V+ FN+P   SFAFLLSSKAGGCGLNLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV
Sbjct:    8 LCRERGLPSVRLDGSTSASKRMKLVDVFNDPKTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFV 98

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A0V0HUJ3_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HUJ3_SOLCH)

HSP 1 Score: 151 bits (381), Expect = 1.010e-43
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 94
             C     PF+RLDG+T +SKRQK+VN FN+P    FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   57 LCRERRYPFLRLDGTTSISKRQKLVNHFNDPAKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 148

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A5B6YH93_DAVIN (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YH93_DAVIN)

HSP 1 Score: 150 bits (378), Expect = 4.370e-43
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 94
             C     PF+RLDG+T +SKRQK+VN FN+P    F FLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   33 LCRERRYPFLRLDGTTSISKRQKLVNRFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 124

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A151RRA8_CAJCA (Helicase C-terminal domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RRA8_CAJCA)

HSP 1 Score: 150 bits (379), Expect = 2.400e-42
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVTA 95
             C     P +RLDG+T +SKRQKMVN FN+P    F FLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++A
Sbjct:    9 LCRERRYPHLRLDGTTSISKRQKMVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSA 101

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: UPI001FB080BD (protein CHROMATIN REMODELING 25-like n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB080BD)

HSP 1 Score: 150 bits (380), Expect = 6.970e-42
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 94
             C     PF+RLDG+T +SKRQK+VN FN+P    FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   57 LCRERRYPFLRLDGTTSISKRQKLVNRFNDPTKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 148

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A2G3B2U3_CAPCH (DNA repair and recombination protein RAD54 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3B2U3_CAPCH)

HSP 1 Score: 152 bits (383), Expect = 7.130e-42
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 94
             C     PF+RLDG+T +SKRQK++N FN+P    FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:  263 LCRERRHPFLRLDGTTSISKRQKLINRFNDPAKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 354

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A7S4QD60_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QD60_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.030e-41
Identity = 68/91 (74.73%), Postives = 73/91 (80.22%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFV 93
             C   +  F RLDGS  + KRQKMV+ FN+P     AFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF+
Sbjct:   83 MCRENNWGFCRLDGSITMKKRQKMVDEFNDPSTPLIAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFL 173

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A2C9VLL7_MANES (Helicase C-terminal domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VLL7_MANES)

HSP 1 Score: 148 bits (374), Expect = 1.680e-41
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 94
             C     P+VRLDG+T + KRQK+VN FN+P    F FLLSSKAGGCGLNLIGGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:   14 LCRERRYPYVRLDGTTSIGKRQKLVNRFNDPAKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 105

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BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Match: A0A453PN85_AEGTS (Helicase C-terminal domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PN85_AEGTS)

HSP 1 Score: 147 bits (370), Expect = 1.870e-41
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 0

Query:    3 FCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVT 94
             C     P+VRLDGST ++KRQK+VN FN+     FAFLLSSKAGGCGLNL+GGNRLVLFDPDWNPA DKQAAARVWRDGQKKR ++YRF++
Sbjct:  187 LCRERRYPYVRLDGSTSINKRQKLVNQFNDLSRDEFAFLLSSKAGGCGLNLVGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLS 278

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig19838.6432.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSB9_9PHAE	3.620e-50	92.39	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A1V9YCP2_9STRA	2.850e-44	74.73	DNA repair and recombination protein RAD54 (Fragme...	[more]
A0A0V0HUJ3_SOLCH	1.010e-43	75.00	Putative ovule protein (Fragment) n=1 Tax=Solanum ...	[more]
A0A5B6YH93_DAVIN	4.370e-43	73.91	Helicase C-terminal domain-containing protein (Fra...	[more]
A0A151RRA8_CAJCA	2.400e-42	74.19	Helicase C-terminal domain-containing protein n=1 ...	[more]
UPI001FB080BD	6.970e-42	75.00	protein CHROMATIN REMODELING 25-like n=1 Tax=Capsi...	[more]
A0A2G3B2U3_CAPCH	7.130e-42	73.91	DNA repair and recombination protein RAD54 n=1 Tax...	[more]
A0A7S4QD60_9STRA	1.030e-41	74.73	Hypothetical protein (Fragment) n=1 Tax=Ditylum br...	[more]
A0A2C9VLL7_MANES	1.680e-41	72.83	Helicase C-terminal domain-containing protein n=1 ...	[more]
A0A453PN85_AEGTS	1.870e-41	72.83	Helicase C-terminal domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 1..82 e-value: 8.3E-11 score: 51.9
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 10..81 e-value: 2.8E-10 score: 40.5
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 1..95 score: 10.813
None	No IPR available	GENE3D	3.40.50.300		coord: 3..94 e-value: 1.1E-48 score: 168.0
None	No IPR available	PANTHER	PTHR45629	FAMILY NOT NAMED	coord: 4..94
None	No IPR available	PANTHER	PTHR45629:SF6	DNA REPAIR AND RECOMBINATION PROTEIN RAD54-LIKE	coord: 4..94
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig19838	contig	Ecto-sp13_S_contig19838:663..1343 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig19838.6432.1	mRNA_Ecto-sp13_S_contig19838.6432.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig19838 663..1343 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig19838.6432.1 ID=prot_Ecto-sp13_S_contig19838.6432.1|Name=mRNA_Ecto-sp13_S_contig19838.6432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
IPFCPRLDRPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLLSSKAGGCG
LNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVTA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR027417	P-loop_NTPase