mRNA_Ecto-sp13_S_contig19837.6431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19837.6431.1
Unique NamemRNA_Ecto-sp13_S_contig19837.6431.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.060e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   32 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.900e-50
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   33 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.430e-48
Identity = 77/85 (90.59%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 YIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: A0A8J5MIZ0_9STRA (Histone domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MIZ0_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.080e-48
Identity = 76/85 (89.41%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVL+QVHPDTGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   37 YIYKVLRQVHPDTGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 121
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BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.300e-48
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  166 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 157 bits (397), Expect = 4.240e-48
Identity = 76/85 (89.41%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   36 YIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
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BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: M4B6M3_HYAAE (Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B6M3_HYAAE)

HSP 1 Score: 156 bits (394), Expect = 1.110e-47
Identity = 75/85 (88.24%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVL+QVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   33 YIYKVLRQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 117
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BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.680e-47
Identity = 76/85 (89.41%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   69 YIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 155 bits (392), Expect = 2.030e-47
Identity = 75/85 (88.24%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   30 YIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Match: K0TPB8_THAOC (Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPB8_THAOC)

HSP 1 Score: 157 bits (396), Expect = 2.290e-47
Identity = 76/85 (89.41%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 255
            YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   79 YIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19837.6431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI4.060e-52100.00Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CJ22_9STRA5.900e-5094.12Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA1.430e-4890.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A8J5MIZ0_9STRA3.080e-4889.41Histone domain-containing protein n=1 Tax=Phytopht... [more]
A0A836CJT3_9STRA3.300e-4894.12Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B8BX20_THAPS4.240e-4889.41Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
M4B6M3_HYAAE1.110e-4788.24Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B... [more]
A0A7S2P1D6_9STRA1.680e-4789.41Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
H2B_OLILU2.030e-4788.24Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
K0TPB8_THAOC2.290e-4789.41Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19837contigEcto-sp13_S_contig19837:4..261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score168.3
Seed ortholog evalue1.6e-39
Seed eggNOG ortholog2880.D7FWI8
Model size258
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
Cds size258
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.604173-CDS-Ecto-sp13_S_contig19837:3..2611681463000.604173-CDS-Ecto-sp13_S_contig19837:3..261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19837 4..261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19837.6431.1prot_Ecto-sp13_S_contig19837.6431.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19837 4..261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19837.6431.1

>prot_Ecto-sp13_S_contig19837.6431.1 ID=prot_Ecto-sp13_S_contig19837.6431.1|Name=mRNA_Ecto-sp13_S_contig19837.6431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
YIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATL
SSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS*
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mRNA from alignment at Ecto-sp13_S_contig19837:4..261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19837.6431.1 ID=mRNA_Ecto-sp13_S_contig19837.6431.1|Name=mRNA_Ecto-sp13_S_contig19837.6431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19837:4..261+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACTGGTATCTCCAA
GCGCGGCATGTCGATCATGAACTCGTTCATCAACGACGTGTTTGAGCGCG
TGGCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTG
TCCTCCCGCGAGGTCCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCT
CGCGAAGCACGCCGTTTCCGAGGGTACCAAGGCCGTCACGAAGTTCACCT
CGTCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19837:4..261+

>mRNA_Ecto-sp13_S_contig19837.6431.1 ID=mRNA_Ecto-sp13_S_contig19837.6431.1|Name=mRNA_Ecto-sp13_S_contig19837.6431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19837:4..261+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACTGGTATCTCCAA
GCGCGGCATGTCGATCATGAACTCGTTCATCAACGACGTGTTTGAGCGCG
TGGCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTG
TCCTCCCGCGAGGTCCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCT
CGCGAAGCACGCCGTTTCCGAGGGTACCAAGGCCGTCACGAAGTTCACCT
CGTCCTAA
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