mRNA_Ecto-sp13_S_contig1983.6425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1983.6425.1
Unique NamemRNA_Ecto-sp13_S_contig1983.6425.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1983.6425.1 vs. uniprot
Match: D7FNK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK4_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 2.050e-173
Identity = 271/303 (89.44%), Postives = 279/303 (92.08%), Query Frame = 1 
Query:    1 MKRVGQLKSTLAKVPDPPAVAAEMALLYLVLSDQRGALKSFQLAAKPSPERVPTKEETDKREMQERRLMLLNKDRRAEALAQLEAQDAEREREREATEHARRRQAATGIYRCLLEMKQPVQAAEAARTRLDMCETREERQQVETEIHEALLKYDGLIEPEATNQGAWLTESAGALVDLHVDVLRSLTGFSIHEKSASPSSCWGTSSLGGAKEAVDDLEEGSRAPVKEISYRGGDVRETTGRGVGISADGHRGNTLLGGCDSTLTKRDAFSATACEGVVSRRGSTCGGNGPRDVAATTAEVAPD 909
            MKRVGQLKSTLAK PDPPAVAAE+ALLYLVLSDQRGALKSFQLAAKPSPERVPTKEETDKREMQERRLMLLNKDRRAEALAQLEAQDAEREREREATEHARRR+AATG+YRCLLEMKQPVQAAEAAR RLDMCETREERQQVETEIHE LLKYDGLIEPEATNQGAWLTESAGAL DLH DVLRSLTGFS+HEKSASPSSCWGTSS GGA EAVDD EEGS AP  EI++RGG V ETTGR VG+SADG+RGN LL G DSTLTK  AFSAT CEG  S RG TCGGNGPRDVAATTAEVAPD
Sbjct:    1 MKRVGQLKSTLAKAPDPPAVAAELALLYLVLSDQRGALKSFQLAAKPSPERVPTKEETDKREMQERRLMLLNKDRRAEALAQLEAQDAEREREREATEHARRRKAATGVYRCLLEMKQPVQAAEAARARLDMCETREERQQVETEIHETLLKYDGLIEPEATNQGAWLTESAGALSDLHADVLRSLTGFSMHEKSASPSSCWGTSSSGGAMEAVDDPEEGSCAPGMEINHRGGGV-ETTGRAVGVSADGYRGNNLLEGGDSTLTKEGAFSATVCEGAGSSRGYTCGGNGPRDVAATTAEVAPD 302
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1983.6425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK4_ECTSI2.050e-17389.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1983contigEcto-sp13_S_contig1983:2..2312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size909
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005120.1
Cds size909
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.2981634-CDS-Ecto-sp13_S_contig1983:1..4871681463000.2981634-CDS-Ecto-sp13_S_contig1983:1..487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 2..487 -
1681463000.3071842-CDS-Ecto-sp13_S_contig1983:1075..13501681463000.3071842-CDS-Ecto-sp13_S_contig1983:1075..1350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 1076..1350 -
1681463000.3157125-CDS-Ecto-sp13_S_contig1983:2164..23121681463000.3157125-CDS-Ecto-sp13_S_contig1983:2164..2312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1983 2165..2312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1983.6425.1prot_Ecto-sp13_S_contig1983.6425.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1983 2..2312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1983.6425.1

>prot_Ecto-sp13_S_contig1983.6425.1 ID=prot_Ecto-sp13_S_contig1983.6425.1|Name=mRNA_Ecto-sp13_S_contig1983.6425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MKRVGQLKSTLAKVPDPPAVAAEMALLYLVLSDQRGALKSFQLAAKPSPE
RVPTKEETDKREMQERRLMLLNKDRRAEALAQLEAQDAEREREREATEHA
RRRQAATGIYRCLLEMKQPVQAAEAARTRLDMCETREERQQVETEIHEAL
LKYDGLIEPEATNQGAWLTESAGALVDLHVDVLRSLTGFSIHEKSASPSS
CWGTSSLGGAKEAVDDLEEGSRAPVKEISYRGGDVRETTGRGVGISADGH
RGNTLLGGCDSTLTKRDAFSATACEGVVSRRGSTCGGNGPRDVAATTAEV
APD
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mRNA from alignment at Ecto-sp13_S_contig1983:2..2312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1983.6425.1 ID=mRNA_Ecto-sp13_S_contig1983.6425.1|Name=mRNA_Ecto-sp13_S_contig1983.6425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1983:2..2312- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACGGGTTGGGCAGTTGAAGTCTACTCTGGCGAAGGTCCCAGACCC
CCCCGCGGTCGCGGCCGAGATGGCACTACTATACCTTGTACTCTCGGACC
AAAGGGGCGCTTTGAAGAGCTTTCAGCTGGCCGCCAAGCCATCTCCTGGT
CAGTCAGACACCCAACAGTAAGCCCCGAAAGAGAACATCTGTACGACAGA
ACGGCACCTATTGTTCATAATTTTTCGTATAGACTCTGTGCTTCAAGCAG
TTTACTATCCTACACTCTCGCAGTTTCCAGCTACCCTACGACCTGGCTTC
TCTAGCGGAAGAGCTCCGATCCGGGGTCACACACGGGTTGGTTCATTATC
AACATAGAAGCATCACCGCGTATGTTTGTTGACTTCGCACAAAGCGCTCT
ATCCGCTTCCTCCATGTTTTCATGCACATCATCTCCATCATCATGAAGTT
TCAAACAACAGAAACTTCAAACCTTGTAGGGACAGCGAGATCTCTCGAAC
GCATCTCCTAGAAAGGGAAGGACGGTATTCAGGTTCGACGGATACAACTT
TGCTGTAGCACGAACAACTTGGAAGTGGCAGTCAGCGCCTAAAACATGCG
CAGAACTCCGAATACATACACTCTTGCCTGACCATCTCTTTGGGAAAAAA
AACTCCAACCACAAGACGATAACGTTCTGACTTACCTTGTTCTCACATGG
ATTCGAAATCCGACGTGAGGGATCGGACAGAGTACAGAACACAACGATAC
AGAGAAAAAGAAGGTACAAACATGTCTTCACCGTGCCCGTATCCGGACGC
TAAAACCTAGTGGTTTGCTTCCCGCTAATCTTTTGATACCTGTTCTTGTT
CGCTCGTTTGTGTGTCACCATACCTCATCCGATGGCGGTGGTTTTTGTTT
CGCTTCAATCCCTTTCTCTGTCCCCACTTGTTCCCCTCCCTTTCACGTCC
CTACCACCTCAGAACGCGTCCCGACGAAGGAAGAGACGGACAAGAGGGAG
ATGCAAGAGCGCCGGCTGATGTTGCTTAACAAGGACCGGAGAGCCGAGGC
TCTCGCCCAGCTGGAGGCCCAAGACGCAGAGAGGGAACGAGAGCGCGAAG
CAACAGAGCACGCAAGGAGGAGACAGGCGGCCACTGGAATCTACCGGTGC
CTCCTGGAGATGAAGCAGCCGGTCCAGGCGGCGGAGGCTGCGAGAACGAG
GCTCGACATGTGCGAGACGCGCGAAGAGCGCCAGCAGGTACATGTAGTAC
ATAGGTACACGTAGTACATGCAACACTTACAAATCGATATACGTTCATTC
CAACTAAAGGGATCTTCATGCTTTGTCGGTGTTATCCACTGGTTCTCTGC
TGCCTCGTGATTCCGCTCAGCGGCACCATCCAATGATGCTCGTGGAACCT
CTTCAGCACGCTCGTTGGTTTGATTCCCAACACATACCGAGTGTGAGTGA
GTTTTTGGCAAAATACTCTTAGTGCGTGGGGTTGGTTCCACGCCGCAAGT
CATGTCGAAAAAATCTTGCAAAGGCTCACGTTCCGGAGAAGAGCGTAGGC
CAGTGGGGGGCAGGGAGCGAGGGGGTGGGGGGGCGTCGTCTTTGCTGCTC
TCCTTGGGGTCTTGAAGTTTTTCTGTGATGTTCATTGGTACGAAACGAGA
TGCGAGAGATTTCTTGCCAAATCCCTTAACCAGCAAGCACAACAACAGCG
ATATGCCACCACGGCAAGCTCAAGAGCCCACAATGCGGTAGCGTTGAGCG
CTGTGTGTCTCTACCAAAATCTTCGATGGTCTAAATTGTAACACTTCGCG
ATAAGTCTGGTCACGCCACCGCTAGGTCGAGACGGAAATTCACGAGGCGT
TGCTCAAGTACGATGGTCTAATCGAGCCGGAAGCCACGAACCAAGGGGCG
TGGCTCACGGAATCCGCGGGGGCTCTAGTGGACCTTCATGTGGACGTGCT
CCGGAGTCTGACCGGCTTTTCCATACACGAAAAAAGTGCATCTCCATCAT
CTTGCTGGGGCACCTCTTCCTTAGGAGGAGCAAAGGAAGCGGTAGACGAC
CTGGAAGAGGGATCGCGTGCACCAGTAAAAGAAATCAGCTACCGGGGAGG
CGATGTACGGGAAACAACAGGAAGAGGCGTCGGTATTAGCGCGGACGGTC
ACCGAGGGAACACTCTGCTGGGGGGTTGTGATAGCACACTGACCAAGAGG
GATGCCTTCTCAGCTACCGCCTGTGAAGGGGTGGTTTCCAGAAGGGGGTC
CACGTGCGGCGGCAACGGACCGCGTGATGTTGCGGCAACAACAGCAGAAG
TGGCCCCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1983:2..2312-

>mRNA_Ecto-sp13_S_contig1983.6425.1 ID=mRNA_Ecto-sp13_S_contig1983.6425.1|Name=mRNA_Ecto-sp13_S_contig1983.6425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1983:2..2312- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACGGGTTGGGCAGTTGAAGTCTACTCTGGCGAAGGTCCCAGACCC
CCCCGCGGTCGCGGCCGAGATGGCACTACTATACCTTGTACTCTCGGACC
AAAGGGGCGCTTTGAAGAGCTTTCAGCTGGCCGCCAAGCCATCTCCTGAA
CGCGTCCCGACGAAGGAAGAGACGGACAAGAGGGAGATGCAAGAGCGCCG
GCTGATGTTGCTTAACAAGGACCGGAGAGCCGAGGCTCTCGCCCAGCTGG
AGGCCCAAGACGCAGAGAGGGAACGAGAGCGCGAAGCAACAGAGCACGCA
AGGAGGAGACAGGCGGCCACTGGAATCTACCGGTGCCTCCTGGAGATGAA
GCAGCCGGTCCAGGCGGCGGAGGCTGCGAGAACGAGGCTCGACATGTGCG
AGACGCGCGAAGAGCGCCAGCAGGTCGAGACGGAAATTCACGAGGCGTTG
CTCAAGTACGATGGTCTAATCGAGCCGGAAGCCACGAACCAAGGGGCGTG
GCTCACGGAATCCGCGGGGGCTCTAGTGGACCTTCATGTGGACGTGCTCC
GGAGTCTGACCGGCTTTTCCATACACGAAAAAAGTGCATCTCCATCATCT
TGCTGGGGCACCTCTTCCTTAGGAGGAGCAAAGGAAGCGGTAGACGACCT
GGAAGAGGGATCGCGTGCACCAGTAAAAGAAATCAGCTACCGGGGAGGCG
ATGTACGGGAAACAACAGGAAGAGGCGTCGGTATTAGCGCGGACGGTCAC
CGAGGGAACACTCTGCTGGGGGGTTGTGATAGCACACTGACCAAGAGGGA
TGCCTTCTCAGCTACCGCCTGTGAAGGGGTGGTTTCCAGAAGGGGGTCCA
CGTGCGGCGGCAACGGACCGCGTGATGTTGCGGCAACAACAGCAGAAGTG
GCCCCCGAC
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