mRNA_Ecto-sp13_S_contig19828.6424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19828.6424.1
Unique NamemRNA_Ecto-sp13_S_contig19828.6424.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19828.6424.1 vs. uniprot
Match: D8LCI2_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.720e-41
Identity = 122/134 (91.04%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:  106 WSKRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRTKKHGREIISVSEQGLSSEGQRGMMHELFGGGQSVSSQPSPTRTGNGGSSSSSDGTDRFADERAPAADREETAAAAWLFMGLRMKRRVGDDVG 507
            WSKRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRTKKHGREIISVSEQG  SEGQRGMMHELFGGGQSVSS P+ T TGN GSSSSS GTDRFADERAPA +REETAAAAWLFMGLRMK+RV DDVG
Sbjct:  116 WSKRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRTKKHGREIISVSEQGPPSEGQRGMMHELFGGGQSVSSGPTSTGTGNRGSSSSSGGTDRFADERAPAEEREETAAAAWLFMGLRMKKRVADDVG 249
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19828.6424.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.010e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    4 CGHPRCTTRASFGAEGSRKAEFCSRHAKEGMVDV 105
            C H  CTTRA+FG  GS+KAEFCSRHA++GMVD+
Sbjct:    9 CDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19828.6424.1 vs. uniprot
Match: D7FNJ9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.210e-5
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 CGHPRCTTRASFGAEGSRKAEFCSRHAKEGMVDVWSKR 117
            CG P C T+A++GA GS+KA+FC+RHA +GMV+V +K+
Sbjct:   10 CGFPSCLTQANYGANGSKKAQFCARHADDGMVNVTAKK 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19828.6424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCI2_ECTSI2.720e-4191.04EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2... [more]
D8LCH9_ECTSI7.010e-670.59EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FNJ9_ECTSI6.210e-557.89EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19828contigEcto-sp13_S_contig19828:680..2171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1492
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-26_005130.1
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.1982088-UTR-Ecto-sp13_S_contig19828:679..7721681463000.1982088-UTR-Ecto-sp13_S_contig19828:679..772Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19828 680..772 +
1681463000.2155178-UTR-Ecto-sp13_S_contig19828:1309..21711681463000.2155178-UTR-Ecto-sp13_S_contig19828:1309..2171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19828 1310..2171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.2072291-CDS-Ecto-sp13_S_contig19828:772..13091681463000.2072291-CDS-Ecto-sp13_S_contig19828:772..1309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19828 773..1309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19828.6424.1prot_Ecto-sp13_S_contig19828.6424.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19828 773..1309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19828.6424.1

>prot_Ecto-sp13_S_contig19828.6424.1 ID=prot_Ecto-sp13_S_contig19828.6424.1|Name=mRNA_Ecto-sp13_S_contig19828.6424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MVDVWSKRGRCAYQGCPTRAHFGFDGCRKAEFCSRHAKDGMVDFRTKKHG
REIISVSEQGLSSEGQRGMMHELFGGGQSVSSQPSPTRTGNGGSSSSSDG
TDRFADERAPAADREETAAAAWLFMGLRMKRRVGDDVGNNPPREVSRSAG
HAAQFGRPMPGSVEPVRDKDGIPVRAGR*
back to top

mRNA from alignment at Ecto-sp13_S_contig19828:680..2171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19828.6424.1 ID=mRNA_Ecto-sp13_S_contig19828.6424.1|Name=mRNA_Ecto-sp13_S_contig19828.6424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19828:680..2171+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGTGGGCACCCGCGTTGCACCACGCGGGCGAGCTTCGGCGCAGAAGG
ATCGAGGAAAGCAGAATTCTGTTCGCGACACGCGAAAGAGGGGATGGTGG
ACGTCTGGAGCAAGAGAGGTCGCTGCGCCTACCAGGGCTGTCCCACGCGG
GCGCACTTCGGCTTCGACGGCTGCAGGAAAGCAGAGTTCTGTTCGCGGCA
CGCGAAGGACGGGATGGTGGACTTCAGGACCAAGAAGCACGGCCGCGAAA
TTATTTCTGTGTCCGAGCAAGGGCTGTCCAGCGAGGGACAGAGGGGAATG
ATGCACGAACTTTTTGGTGGTGGCCAGAGCGTCTCCTCACAACCATCTCC
GACAAGAACGGGTAATGGGGGCAGCAGCAGCAGCAGTGACGGTACGGATC
GATTCGCCGACGAACGAGCTCCGGCGGCAGATAGGGAGGAGACAGCCGCT
GCGGCTTGGCTGTTCATGGGGCTACGGATGAAGAGGAGGGTTGGTGACGA
TGTTGGTAATAATCCGCCCCGCGAGGTTTCGCGTAGCGCAGGGCATGCAG
CGCAGTTCGGGCGGCCTATGCCAGGTTCGGTGGAACCGGTACGGGATAAA
GATGGAATTCCGGTGAGGGCGGGGCGATGATGGTGTTCAGGCGGCGGCGG
CGGCGGCGGCGTTTTTTGCTTGTGGTATTTTATCTGCCACCGGTAGGTGT
TAGCGCCAAGACGTGAATTTGGAGTGTTATTCTTGGCTTAAAGTTGTCGA
GCTTGTTGTCAAGCTTACTGCTGGGCAGCAACTAGTCAAATAAATCATGT
ACAGATGTTCTGCCACGTTTTTCCTGTGTTGATCTGTGGAGATATTTTCT
TTGTTGTGCCGTGCGACGAAACTTCTGGTGCGTCGCTTGATTAGCGGAGT
AATTCGTTCCCATTGAGTTGCTATGTATCTTGCGTTGCTCCTGTTCCCTG
CGTTAAGGCACGCGCATCTCTGTCGGAAGCAGCTGCACCTACAGCGGTAC
CCATAGTTCGGTGACATGCTAGGCATTTGGCTGTACAACTGCGCGACACC
GACCGGTTGATGTTGTGGTAATGGTGAGCACTGCTCTGTGACTACCAGGG
ATGAAGACCAATGTTGTGCGCCCGAATGACTTCCGGTGATTCCCACCGAA
CGTTGTTCTCCGAGCATAAGCTGTCTGAGGCGCTACCGACGATTTCGTTT
GCAGGACTGCAGGAAATGAAGCAGGACTTTGTATTTTGTAGCTGATTTCG
AGTACGGGTAGACGTGTTGTGCGGAAACTCCGCAATTATATGAGATGCGA
GGTATGTAGAGAAACGAAGTGAGTAGGTTCAGGTAACTGTGAAATTGTTT
TATGCTCGAGGTTTTGCGCTACAGGCGCAACGATATTTCGTTTGCGTGTG
TTGTGGTACAGCAGTCCGAGGTTCACACATCTGGTAGGTGGGGTTTGTGT
GTTGTCCTTTTTGTGATACATGTTTGTCGTGGCTGTGGGTTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19828:680..2171+

>mRNA_Ecto-sp13_S_contig19828.6424.1 ID=mRNA_Ecto-sp13_S_contig19828.6424.1|Name=mRNA_Ecto-sp13_S_contig19828.6424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19828:680..2171+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACGTCTGGAGCAAGAGAGGTCGCTGCGCCTACCAGGGCTGTCC
CACGCGGGCGCACTTCGGCTTCGACGGCTGCAGGAAAGCAGAGTTCTGTT
CGCGGCACGCGAAGGACGGGATGGTGGACTTCAGGACCAAGAAGCACGGC
CGCGAAATTATTTCTGTGTCCGAGCAAGGGCTGTCCAGCGAGGGACAGAG
GGGAATGATGCACGAACTTTTTGGTGGTGGCCAGAGCGTCTCCTCACAAC
CATCTCCGACAAGAACGGGTAATGGGGGCAGCAGCAGCAGCAGTGACGGT
ACGGATCGATTCGCCGACGAACGAGCTCCGGCGGCAGATAGGGAGGAGAC
AGCCGCTGCGGCTTGGCTGTTCATGGGGCTACGGATGAAGAGGAGGGTTG
GTGACGATGTTGGTAATAATCCGCCCCGCGAGGTTTCGCGTAGCGCAGGG
CATGCAGCGCAGTTCGGGCGGCCTATGCCAGGTTCGGTGGAACCGGTACG
GGATAAAGATGGAATTCCGGTGAGGGCGGGGCGATGA
back to top