mRNA_Ecto-sp13_S_contig19801.6419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19801.6419.1
Unique NamemRNA_Ecto-sp13_S_contig19801.6419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A6H5JAN0_9PHAE (NYD-SP28 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAN0_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 6.230e-60
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    4 DPNRPDQVVTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFFGSDVAEPDAEDIPSMATFRALGLDPDREPDALKV 333
            DPNRP QVV KVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEA LVSAVSMLKALGVEEQSDIEELMRYFFGSDVAEPDAEDIPSMATFRALGLDPDREPDALKV
Sbjct:  494 DPNRPGQVVAKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAQLVSAVSMLKALGVEEQSDIEELMRYFFGSDVAEPDAEDIPSMATFRALGLDPDREPDALKV 603
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A7S2S5S2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5S2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.420e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:   19 DQVVTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFF 231
            D     VSG ++KA+++LL  EAGFLVD  VK+ALD+   +E+ L  A S+L+ALGVE ++D+E L+ YFF
Sbjct:  486 DPAARMVSGAKMKAMMQLLVSEAGFLVDTKVKEALDSFLPEESELAQAESLLRALGVEHENDVEALLSYFF 556
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A8J5IKS5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IKS5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.080e-12
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   28 VTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFF 231
            V K+SG ++K +L++L+ EAGFLV+  V+ ALD +  DEA LV A  +++ALGV+ + D+E+LM YFF
Sbjct:  490 VKKISGAKLKYMLKMLASEAGFLVNGSVQQALDNLPDDEAELVKADMIMRALGVDNEEDMEKLMGYFF 557
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A8K1FH92_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH92_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-11
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   10 NRPDQVVTK-VSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFFGSDVAE 249
            N  D VV K +S T++K +LR+L+ EAGFLV+  V+ ALD +  DEA LV A  +++ALG+++++D+E LM +F+    AE
Sbjct:  466 NDMDVVVEKKISSTKLKYMLRVLASEAGFLVNGNVQQALDNLPDDEAELVKADMIMRALGIDQENDMERLMGFFYEDPRAE 546
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A7S3XRL0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL0_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 3.610e-11
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:   37 VSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFFGSDVAEPDAEDIPSMATFRALGLDPDREPDALK 330
            VSG +++A++ L+ QE GFL+D  +  ALD +  D+A +  A ++L ALGV++Q ++E L RYFF     + D  + P+   +  L L+ ++ PD ++
Sbjct:   23 VSGAKIRAMVELIVQECGFLLDGQLTAALDRLPADQAEVRQAEALLAALGVKDQREVEALTRYFFRRGAEDED--EPPTGEDYNDLALEVEKVPDIVR 118
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: H3GY05_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3GY05_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 4.780e-11
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   28 VTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFF 231
            V K+SG ++K +L++L+ EAGFLV+  V+ AL+ +  DEA LV A  +++ LGV+ + D+E+LM YFF
Sbjct:  489 VKKISGAKLKYMLKMLASEAGFLVNGSVQQALENLPDDEAELVKADMIMRTLGVDNEEDMEKLMGYFF 556
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: D0P0Z7_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P0Z7_PHYIT)

HSP 1 Score: 67.8 bits (164), Expect = 6.520e-11
Identity = 31/69 (44.93%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   25 VVTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFF 231
            ++ K+SG ++K +L++L+ EAGFLV+  V+ AL+ +  DEA LV A  +++ALGV+ + ++E+LM YFF
Sbjct:  490 LIKKISGLKLKYMLKMLASEAGFLVNGSVQQALNNLPNDEAELVKADMIMRALGVDREEEMEKLMGYFF 558
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A3R7KYW4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KYW4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.530e-11
Identity = 31/68 (45.59%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   28 VTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFF 231
            V K+SG ++K +L++L+ EAGFLV+  V+ AL+ +  DEA LV A  +++ LG++ + D+E+LM YFF
Sbjct:  488 VKKISGAKLKYMLKMLASEAGFLVNGSVQQALENLPDDEAELVKADMIMRTLGIDNEEDMEKLMGYFF 555
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A662WWB9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWB9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.560e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   28 VTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFF 231
            V K+SG ++K +L++L+ EAGFLV+  V+ AL+ +  DEA LV A  +++ LGV+ + D+E LM YFF
Sbjct:  497 VRKISGAKLKYMLKMLASEAGFLVNGSVQQALENLPDDEAELVKADMIMRTLGVDNEEDMERLMGYFF 564
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BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Match: A0A482RM41_9ARCH (NYD-SP28_assoc domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RM41_9ARCH)

HSP 1 Score: 67.4 bits (163), Expect = 6.780e-11
Identity = 31/75 (41.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    7 PNRPDQVVTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAHLVSAVSMLKALGVEEQSDIEELMRYFF 231
            P+  +Q   KV+G RV+AVL++L+ EAGF+++P +  +L+ +  DEA +  A +MLKALG++ +  +  L++YFF
Sbjct:   32 PSAANQNKRKVAGFRVRAVLKMLASEAGFMINPLIAQSLETLPDDEADVSRAETMLKALGIKSEEKLHTLVQYFF 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19801.6419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JAN0_9PHAE6.230e-6097.27NYD-SP28 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2S5S2_9STRA2.420e-1350.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5IKS5_9STRA4.080e-1250.00Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A8K1FH92_PYTOL1.880e-1145.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3XRL0_HETAK3.610e-1135.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
H3GY05_PHYRM4.780e-1147.06Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
D0P0Z7_PHYIT6.520e-1144.93Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A3R7KYW4_9STRA6.530e-1145.59Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A662WWB9_9STRA6.560e-1147.06Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A482RM41_9ARCH6.780e-1141.33NYD-SP28_assoc domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19801contigEcto-sp13_S_contig19801:439..2167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score208.4
Seed ortholog evalue1.7e-51
Seed eggNOG ortholog2880.D8LIH6
Preferred nameDRC1
Model size335
KEGG koko:K19754
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0032838,GO:0034622,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048731,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
EggNOG free text desc.cilium-dependent cell motility
EggNOG OGs2CMDT@1,2QQ2B@2759
Cds size333
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.6970084-CDS-Ecto-sp13_S_contig19801:438..5611681462999.6970084-CDS-Ecto-sp13_S_contig19801:438..561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19801 439..561 -
1681462999.7081506-CDS-Ecto-sp13_S_contig19801:1149..12451681462999.7081506-CDS-Ecto-sp13_S_contig19801:1149..1245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19801 1150..1245 -
1681462999.718434-CDS-Ecto-sp13_S_contig19801:2053..21671681462999.718434-CDS-Ecto-sp13_S_contig19801:2053..2167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19801 2054..2167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19801.6419.1prot_Ecto-sp13_S_contig19801.6419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19801 439..2167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19801.6419.1

>prot_Ecto-sp13_S_contig19801.6419.1 ID=prot_Ecto-sp13_S_contig19801.6419.1|Name=mRNA_Ecto-sp13_S_contig19801.6419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
DDPNRPDQVVTKVSGTRVKAVLRLLSQEAGFLVDPGVKDALDAMTTDEAH
LVSAVSMLKALGVEEQSDIEELMRYFFGSDVAEPDAEDIPSMATFRALGL
DPDREPDALKV
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mRNA from alignment at Ecto-sp13_S_contig19801:439..2167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19801.6419.1 ID=mRNA_Ecto-sp13_S_contig19801.6419.1|Name=mRNA_Ecto-sp13_S_contig19801.6419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19801:439..2167- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGATCCCAACCGGCCGGATCAAGTGGTAACGAAGGTCTCGGGGACGCG
GGTAAAGGCCGTGCTGAGGCTTCTCTCGCAAGAGGCGGGATTTCTAGTCG
ACCCAGGTGTTAAGGTCAGCGACGACGGGGGGAAGGGGGATTTGTTAGTG
GTCTTCGCTTTCGAAGCCGTCTGGTCTTTCGGGTACAGTACGTTCTTCAT
TTCAGATTCCTCAAGGTGATGAGGAGAAAGCATAATCCGATCCGATGAAT
AGGATGGTGTCAACGACGTCCTCAGACTCCGAGAACCTTGCTTGGTCAAG
GGAAGGATGTACTTGTGATCTACACAACCGCATGCTAGCTATTACCCCGC
GGTTGCCGACTGAGGAAGGAAGTGTGGCTATGATGCCGTTCATTTCGTTC
TGTAACGGTCGCTTGCATGGATTCGACGGTTGTGCAACTTGGAGCAGCTA
AGGACGGAACGTATTTGTGAGTACTTTCTTACCCCCCTCCTGTCGACTTG
GGCTTTTGTAGTTTGGGTGAAATGTTTGGCACTCAGATTTCCAATTGGTC
TATCTTCCTTATTTTCTGTACTGCGTCATCCGAGATCGAAGAACGCGCCG
CCCTTACATGATTAGGACCACAAGCATGACGAAACTATTTGTCTAGGTGC
GGTAGCCGTGGTACGAACATCAGACCGAGCAGCGCAGAATAAGTGCATTG
CTTCCCGTATCACAGCAATTATTACCAGGGGAAATGTATCGGGGGTGCAC
ATTGTGCAAGCTTTCCTTATCTGGTTTGGCTGCGACGAAAAGAGTAAAAA
CATGTTGCTACCTGTGCTTGCATACCATTCGGAGTAGCACACACCCCTCC
TCCGCCCCCCAGCCCCCCCCCCCCCCCTATCCACCCATCGTGGCCTTTCC
CCTGCGCGACTTCTTTATGCAGGACGCCTTAGATGCCATGACAACCGACG
AAGCCCACTTGGTATCGGCAGTCAGCATGCTCAAGGCTCTCGGGGTAGAG
GAGCAATCGGACATCGAGGTGGGGACGCTCGGGTCATAGGTTGATGTTGA
TGTTGATTTCGTGGTTTCTGTTTTGGCCTTGTTCTTGCAGCCGTCAGATG
TTTCCAGGGAAGAAGAAGACGTGAATCGCTACATTGCACGACCGGCGCAC
GCCCGTCATCCCCTTCGCGTTCGCCTTCAACGATTCACCGCCATCCCAAT
TGCGTCATCGTGACTATAAATCAGCGACGACGAACACCGTTCTTTCGATT
ATGTGAAGTTGTGGTTTCTGTTTTGGCCTTGTTCTTGCAGCCGTCAGATG
TTTCCAGGGAAGAAGAAGACGTGAATCGCTACATTGCACGACCGGCGCAC
GCCCGTCATCCCCTTCGCGTTCGCCTTCAACGATTCACCGCCATCCCAAT
TGCGTCATCGTGACTATAAATCAGCGACGACGAACACCGTTCTTTCGATT
ATGTGAAGTTACTCTGCCATATTTCACCTTCTCGACTGCTCTCAGAGACG
TTTAGTGTCCTAACTGGACACCTGTGCACAACGTCTCGTCGATTGCCCTA
CTTACATATTCGCCTCCTCTCCCTCTCTTGTCTCCCAACGAAACCTTTTC
CCGAAGGAACTGATGCGGTACTTCTTCGGCTCAGACGTGGCGGAGCCAGA
TGCTGAGGACATACCGTCGATGGCCACGTTCAGAGCCCTGGGGCTAGACC
CCGACAGAGAGCCAGATGCCCTCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19801:439..2167-

>mRNA_Ecto-sp13_S_contig19801.6419.1 ID=mRNA_Ecto-sp13_S_contig19801.6419.1|Name=mRNA_Ecto-sp13_S_contig19801.6419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19801:439..2167- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGATCCCAACCGGCCGGATCAAGTGGTAACGAAGGTCTCGGGGACGCG
GGTAAAGGCCGTGCTGAGGCTTCTCTCGCAAGAGGCGGGATTTCTAGTCG
ACCCAGGTGTTAAGGACGCCTTAGATGCCATGACAACCGACGAAGCCCAC
TTGGTATCGGCAGTCAGCATGCTCAAGGCTCTCGGGGTAGAGGAGCAATC
GGACATCGAGGAACTGATGCGGTACTTCTTCGGCTCAGACGTGGCGGAGC
CAGATGCTGAGGACATACCGTCGATGGCCACGTTCAGAGCCCTGGGGCTA
GACCCCGACAGAGAGCCAGATGCCCTCAAGGTG
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