mRNA_Ecto-sp13_S_contig19800.6418.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A6H5KZW9_9PHAE (XRN_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZW9_9PHAE) HSP 1 Score: 652 bits (1683), Expect = 1.060e-228 Identity = 341/366 (93.17%), Postives = 349/366 (95.36%), Query Frame = 1
Query: 1 NLDEDYGAENGRERSSRKGKTPLFDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALEWRGVSSGLDIAKILKTCQNLMPQELSEFHDDSHSSGAWKVVYLDLAARQRTPPAPPPPSKDFPPLDSSRRSNSYKFQRIQVTSMSATSAPRNLPWSSAINSDSSSKEMQGILDLPYKKALHGSGKAEGGRRRRGPGGKGARGPREGAAPPKSAAWRKKSSAPRIRKSGKAGEGSDARRGTNGRGEDTVPDL-RRPPPGVA-DVKARHSPFPSSARPNSRRSSMCLGKLATRRSHCRLIL 1092
NLDED GAENGRER SRKGKTPLFDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLP+RLQPLVRPGSPLLEALEWRGVSSGLDIAKILKTCQNLMPQELSEFHD +HSS AWKVVYLDL+ARQRTPPAPPPPSKDFPPLDSSR SNSYKFQRIQVTSMSATSAPRNLPWSSA SDSSS+EMQG+LDLPYKKAL+GSGK EGGRRRRG GKGARGPR GAAPPKSAAWRKKSSAPRIRKSGKAGEGSDARRGTNGRGED PDL RRPPP VA DVKAR SPFPSSARP+SRRSSMCLGKLATRRSHCRL+L
Sbjct: 442 NLDEDSGAENGRERGSRKGKTPLFDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPKRLQPLVRPGSPLLEALEWRGVSSGLDIAKILKTCQNLMPQELSEFHDGAHSSCAWKVVYLDLSARQRTPPAPPPPSKDFPPLDSSRHSNSYKFQRIQVTSMSATSAPRNLPWSSA--SDSSSEEMQGVLDLPYKKALNGSGKPEGGRRRRGSAGKGARGPRGGAAPPKSAAWRKKSSAPRIRKSGKAGEGSDARRGTNGRGEDAAPDLPRRPPPAVAADVKARPSPFPSSARPDSRRSSMCLGKLATRRSHCRLLL 805
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A7S0E9R5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E9R5_9CRYP) HSP 1 Score: 77.8 bits (190), Expect = 4.350e-12 Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 70 FDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVR-PGSPLLEAL 378
F++ + G+LWN+QMYIDGYVP++++ Y+ R++P IV W++ L++PV P L ACL M+P T +P+ Q L+R P S L + L
Sbjct: 326 FNIPDYFEGLLWNIQMYIDGYVPDYFYTYNFRFAPDAKSIVKWIESEDFGPFPELSIPVSDCPALQPLHACLAMMPSTS--PEHVPKAYQALIREPSSRLYQVL 427
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A7S4J905_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4J905_GUITH) HSP 1 Score: 70.9 bits (172), Expect = 3.620e-10 Identity = 42/148 (28.38%), Postives = 72/148 (48.65%), Query Frame = 1
Query: 70 FDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLV-RPGSPLLEALEWRGVSSGLDIAKILKTCQNLMPQELS-EFHDDSHSSGAWKVVY 507
F++ + +LWN+QMYIDGYVP++++ Y+ +++P IV W++ L +P L ACL M+P T F+P+ Q L+ P S L + L S D+ + L + + L+ E + +G W + +
Sbjct: 136 FNIPDYFESLLWNIQMYIDGYVPDYFYTYNFKFAPDAKSIVKWIESEDFAPFPELNIPYSECRALQPLHACLAMMPSTS--PEFVPKAYQSLICEPSSRLYQVLNVD--SKDFDVPEFLDIMNTIDGRLLTPEEEIQTRDNGCWSIFF 279
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A4D9CTZ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTZ4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.950e-10 Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 1
Query: 67 LFDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLAN--LAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALEWRGVSSGLDIAKILKTCQNLMPQELSEFHDDSHSSGAWKVVYLDLAARQRTPPAPPPPSKDFPPLDS 582
LFD E +L G+LWN+QMY+DGY P++ + Y R++PS + +++ +++ ++ L+VP PPL ++ACL ++P G +PE L ++ + + + E G + L NL+ ++ H H + + ++ A TP A P PS FPP S
Sbjct: 160 LFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRW--GLHLVPENLSSVLESSARVNKMYE-TGAAFSL----------NLLMDTVNSSHP--HLVRSQNFHWTEIKAN--TPCASPTPSS-FPPSSS 315
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: W7T206_9STRA (Exoribonuclease 2 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T206_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 6.240e-10 Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 1
Query: 67 LFDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLAN--LAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALEWRGVSSGLDIAKILKTCQNLMPQEL--SEFHDDSHSSGAWKVVYLDLAARQRTPPAPPP 552
LFD E +L G+LWN+QMY+DGY P++ + Y R++PS + +++ +++ ++ L+VP PPL ++ACL ++P G +PE L ++ + + + E G + L++ ++ T + P + FH W + + TP + PP
Sbjct: 27 LFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMPRW--GLHLVPENLSSVLESSARVNKMYE-TGAAFSLNL--LMDTVNSSHPHLVRSQNFH--------WTEIKANTPCASPTPSSSPP 179
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A7S3EG98_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG98_9RHOD) HSP 1 Score: 64.7 bits (156), Expect = 2.780e-8 Identity = 38/108 (35.19%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 70 FDVESFLLGVLWNLQMYIDGYVPN--FYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALEWR 387
+DVE+++ G+LWN+QMYIDGY P+ FY+R+ +Y+P ++ + + + +PV P + + +A MLP S P RLQPLV+ G+ + + +E R
Sbjct: 83 YDVETYIKGLLWNMQMYIDGYPPDQLFYYRF--KYAPPVDAVLDF--FLEKGMYTQVDLPVSNRPAITSQLALTLMLP--SAAWSLAPGRLQPLVKSGASISDFVEVR 184
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A433QGS0_9FUNG (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QGS0_9FUNG) HSP 1 Score: 66.6 bits (161), Expect = 2.800e-8 Identity = 76/273 (27.84%), Postives = 120/273 (43.96%), Query Frame = 1
Query: 52 KGKTPLFDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPP---LPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALEWRGVSSGLDIAKI----------LKTCQNLMPQELSEFHDDSHSSGAWKVVYLDLAARQRTPPAPPPPSK--DFPPLDSSRRSNSYKFQRIQVTSMSATSAPRNLPWSSAINSDSSSKEMQGILDLPYKKALHG-SGKAEGGRRRRGPG-GKGARGPREG 819
+ +P+FDV ++L G+LWNL MY +G P+F + Y R +PS I+ WV E L +I P LP S +L + +RG +L L+ + L+ A+ S G +A + L L+ L EF + S V+ R+ P P PPS+ D+P L R ++ KF+ + T P++ I+++ E P++K G + + +GG + RG G G+G RG R G
Sbjct: 423 ESSSPMFDVRTYLEGLLWNLTMYAEGRCPDFKYTYRYRMAPSPRQILEWVN-EREKAAGTLVGQLITCPQSSQLPFSPLLCALLVLPERGNIYLHSSFSTLLTTHAALITAIVASQGSDGGALATLSAAISAIHSTLSPTDRLLLTPLFEFRNPS--------VWWQSLLREHDIPMPIPPSEAGDWPAL---ARGSNIKFKDVVKT------VPQDATAMGWIDAERLRVEAIQAGAWPFRKIFGGGTHRIDGGYQGRGQGRGRGYRGARRG 677
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A7S0BRQ1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BRQ1_9RHOD) HSP 1 Score: 64.7 bits (156), Expect = 5.480e-8 Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 61 TPLFDVESFLLGVLWNLQMYIDGYVPN--FYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALE 381
T +DVE +L G+LWNLQMYIDGY P+ FY+R+ RY+P ++ + NL PV P + + +A MLP S P LQPLV+ G+ + + +E
Sbjct: 121 TGNYDVEMYLKGLLWNLQMYIDGYPPDQQFYYRF--RYAPPVDAVLEYFLEKGTSTQVNL--PVSNRPAITSQLALTLMLP--SAAWSLAPGLLQPLVKSGASINDFVE 223
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A7S2ZT58_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT58_9RHOD) HSP 1 Score: 64.7 bits (156), Expect = 1.010e-7 Identity = 38/108 (35.19%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 70 FDVESFLLGVLWNLQMYIDGYVPN--FYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALEWR 387
+DVE+++ G+LWN+QMYIDGY P+ FY+R+ +Y+P ++ + + + +PV P + + +A MLP S P RLQPLV+ G+ + + +E R
Sbjct: 342 YDVETYIKGLLWNMQMYIDGYPPDQLFYYRF--KYAPPVDAVLDF--FLEKGMYTQVDLPVSNRPAITSQLALTLMLP--SAAWSLAPGRLQPLVKSGASISDFVEVR 443
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Match: A0A7S2ZT80_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT80_9RHOD) HSP 1 Score: 64.7 bits (156), Expect = 1.030e-7 Identity = 38/108 (35.19%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 70 FDVESFLLGVLWNLQMYIDGYVPN--FYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPERLQPLVRPGSPLLEALEWR 387
+DVE+++ G+LWN+QMYIDGY P+ FY+R+ +Y+P ++ + + + +PV P + + +A MLP S P RLQPLV+ G+ + + +E R
Sbjct: 361 YDVETYIKGLLWNMQMYIDGYPPDQLFYYRF--KYAPPVDAVLDF--FLEKGMYTQVDLPVSNRPAITSQLALTLMLP--SAAWSLAPGRLQPLVKSGASISDFVEVR 462 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19800.6418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19800.6418.1 >prot_Ecto-sp13_S_contig19800.6418.1 ID=prot_Ecto-sp13_S_contig19800.6418.1|Name=mRNA_Ecto-sp13_S_contig19800.6418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=365bp NLDEDYGAENGRERSSRKGKTPLFDVESFLLGVLWNLQMYIDGYVPNFYWback to top mRNA from alignment at Ecto-sp13_S_contig19800:207..1606+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19800.6418.1 ID=mRNA_Ecto-sp13_S_contig19800.6418.1|Name=mRNA_Ecto-sp13_S_contig19800.6418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19800:207..1606+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19800:207..1606+ >mRNA_Ecto-sp13_S_contig19800.6418.1 ID=mRNA_Ecto-sp13_S_contig19800.6418.1|Name=mRNA_Ecto-sp13_S_contig19800.6418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19800:207..1606+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |