mRNA_Ecto-sp13_S_contig198.6413.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig198.6413.1
Unique NamemRNA_Ecto-sp13_S_contig198.6413.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: D8LU58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU58_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 6.360e-95
Identity = 138/149 (92.62%), Postives = 141/149 (94.63%), Query Frame = 1
Query:    7 VDIISLCVLAASRILSRNKGRWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDSRLDPHVAAAAAAETAAGAAALGHDLDGGMFLPIGGGGTSSALPPLWADASIGDASGGGFLLDSW 453
            VDIISLCVLAASRILSRNKGRWTKDEH+RFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQD+ LDPHVAAA AAETAAGAAALGHDLDGGMFLP G GG SSAL PLWADAS+GDA GGGF LDSW
Sbjct:   10 VDIISLCVLAASRILSRNKGRWTKDEHERFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDTSLDPHVAAAVAAETAAGAAALGHDLDGGMFLPSGSGGASSALAPLWADASVGDADGGGFPLDSW 158          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: A0A6H5JBL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.650e-46
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 1
Query:    7 VDIISLCVLAASRILSRNKGRWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 246
            V++ISL VLAASRILSRNKGRWTKDEH+RFL VAGQLGKNKESW+WISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE
Sbjct:   33 VNVISLGVLAASRILSRNKGRWTKDEHERFLCVAGQLGKNKESWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 112          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: A0A6H5L659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L659_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.100e-45
Identity = 104/223 (46.64%), Postives = 112/223 (50.22%), Query Frame = 1
Query:   49 LSRNKGRWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE--------------------------------------------------------------------------------------------GGQDSRLDPHVAAAAAAETAAGAAALGHDLDGGMFLPIGGGGTSSA----LPPLWADASIGDASG 429
            LSRNKGRWTKDEH+RFLSVAGQLGK  ESW+WIS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE                                                                                            G QDS LDPHVAAA+A ETAAGAAALGHDLD GMFLP GG G  S+    LPPLW+   IGDASG
Sbjct:   18 LSRNKGRWTKDEHERFLSVAGQLGKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDENEXXXXXXXXXXXXXXXXXXXXXXQIMATPDDARCHSPPSSGLMAVVKVPSVVSLINSYDDCGGFPQAGGIPALPPSLCSPCGLFPGFTPEQGWQDSSLDPHVAAASA-ETAAGAAALGHDLDRGMFLPSGGSGEGSSAPPPLPPLWS--GIGDASG 237          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: D8LU61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU61_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 3.120e-42
Identity = 102/237 (43.04%), Postives = 110/237 (46.41%), Query Frame = 1
Query:   55 RNKGRWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE------------------------------------------------------------------------------------------------------------GGQDSRLDPHVAAAAAAETAAGAAALGHDLDGGMFLPIGGGGTSSA----LPPLWADASIGDASG 429
            RNKGRWTKDEH+RFLSV GQLGK  ESW+ IS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE                                                                                                             GQDS LDPHVAAAAA ETAAGAAALGHDLDGGMFLP GG G  S+    LPPLW+D  IGD+SG
Sbjct:    4 RNKGRWTKDEHERFLSVVGQLGKTTESWKLISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYADDRLDDGEGHEQNEXXXXXXXXXXXGRSTAAGEAPPPQIKATPDGARCHSPPSSGLMVVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGFTPKQDGQDSSLDPHVAAAAA-ETAAGAAALGHDLDGGMFLPSGGSGEGSSAAPPLPPLWSD--IGDSSG 237          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: A0A6H5JA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA96_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.520e-33
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 1
Query:  238 PDEGGQDSRLDPHVAAAAAAETAAGAAALGHDLDGGMFLPIGGGGTSSALPPLWADASIGDASGGGFLLDSW 453
            P EGGQDS LDPHVAAAAAAETAAGAAALGHDLD GMFLP GGGG +SALPPLWADA +GDA GGGFLL+SW
Sbjct:   83 PGEGGQDSCLDPHVAAAAAAETAAGAAALGHDLDEGMFLPSGGGGGASALPPLWADAGVGDAGGGGFLLESW 154          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: A0A3Q7HA84_SOLLC (Uncharacterized protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7HA84_SOLLC)

HSP 1 Score: 63.5 bits (153), Expect = 4.180e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    4 NVDIISLCVLAASRILSRNKG-RWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYF 210
            N D +S C+L   +   R KG  WT++EH+RFL    +LGK    WR IS+  VTTR+P QV +HAQKYF
Sbjct:   14 NGDYLSDCLLGQPK--ERRKGVGWTEEEHRRFLMGLEKLGKG--DWRGISRKFVTTRTPTQVASHAQKYF 79          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: UPI000CE1DF32 (probable transcription factor At5g61620 n=2 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1DF32)

HSP 1 Score: 63.2 bits (152), Expect = 6.870e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   67 RWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYF 210
            RWT++EHK FLS   QLGK+   W+ ISQ  VTT++PAQ+ +HAQKYF
Sbjct:   84 RWTEEEHKLFLSGLNQLGKH--DWKEISQKFVTTKTPAQIASHAQKYF 129          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: A0A0V0H3Y4_SOLCH (Putative myb-like protein J-like (Fragment) n=3 Tax=Solanum TaxID=4107 RepID=A0A0V0H3Y4_SOLCH)

HSP 1 Score: 64.7 bits (156), Expect = 7.790e-10
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    4 NVDIISLCVLAASRILSRNKG-RWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRK 216
            N D +S C+L+  +   R KG  WT++EH+RFL    +LGK    WR IS+  VTTR+P QV +HAQKYF K
Sbjct:   93 NGDYLSDCLLSQPQ--ERRKGVGWTEEEHRRFLMGLEKLGKG--DWRGISRKFVTTRTPTQVASHAQKYFLK 160          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.030e-9
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   52 SRNKGRWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 246
            S N GRWTK+EH  FL      GKN   W  I+ +V  TRS  QVRTH QKYF+K+ +G  FP+E
Sbjct:    4 SFNNGRWTKEEHDAFLQGLVLHGKN---WDLIAPIV-KTRSAVQVRTHGQKYFKKVDKGERFPEE 64          
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Match: M7Z095_TRIUA (Transcription factor MYB1R1 n=3 Tax=Triticum TaxID=4564 RepID=M7Z095_TRIUA)

HSP 1 Score: 61.6 bits (148), Expect = 2.450e-9
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   43 RILSRNKG-RWTKDEHKRFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYF 210
            R   R KG  WT+DEH+RFL+   +LGK    WR IS+  VTTR+P QV +HAQKYF
Sbjct:   13 RAQERKKGVPWTEDEHRRFLAGLEKLGKG--DWRGISRHFVTTRTPTQVASHAQKYF 67          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig198.6413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU58_ECTSI6.360e-9592.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBL6_9PHAE1.650e-4692.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L659_9PHAE1.100e-4546.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU61_ECTSI3.120e-4243.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA96_9PHAE1.520e-3386.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3Q7HA84_SOLLC4.180e-1050.00Uncharacterized protein n=1 Tax=Solanum lycopersic... [more]
UPI000CE1DF326.870e-1060.42probable transcription factor At5g61620 n=2 Tax=Qu... [more]
A0A0V0H3Y4_SOLCH7.790e-1050.00Putative myb-like protein J-like (Fragment) n=3 Ta... [more]
A0A6H5JC35_9PHAE2.030e-952.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
M7Z095_TRIUA2.450e-956.14Transcription factor MYB1R1 n=3 Tax=Triticum TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig198contigEcto-sp13_S_contig198:18183..20220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score149.1
Seed ortholog evalue1.7e-33
Seed eggNOG ortholog2880.D8LU61
Model size456
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Myb-like DNA-binding domain
EggNOG OGs2EA1V@1,2SGBG@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-16_000320.1
Cds size456
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.307986-CDS-Ecto-sp13_S_contig198:18182..183921681462999.307986-CDS-Ecto-sp13_S_contig198:18182..18392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 18183..18392 -
1681462999.3190088-CDS-Ecto-sp13_S_contig198:19974..202201681462999.3190088-CDS-Ecto-sp13_S_contig198:19974..20220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 19975..20220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig198.6413.1prot_Ecto-sp13_S_contig198.6413.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig198 18183..20220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig198.6413.1

>prot_Ecto-sp13_S_contig198.6413.1 ID=prot_Ecto-sp13_S_contig198.6413.1|Name=mRNA_Ecto-sp13_S_contig198.6413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MNVDIISLCVLAASRILSRNKGRWTKDEHKRFLSVAGQLGKNKESWRWIS
QVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDSRLDPHVAAAAAAE
TAAGAAALGHDLDGGMFLPIGGGGTSSALPPLWADASIGDASGGGFLLDS
W*
back to top

mRNA from alignment at Ecto-sp13_S_contig198:18183..20220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig198.6413.1 ID=mRNA_Ecto-sp13_S_contig198.6413.1|Name=mRNA_Ecto-sp13_S_contig198.6413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:18183..20220- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGTTGATATAATCTCGTTGTGTGTACTTGCTGCATCACGCATCCT CAGCCGCAACAAAGGCCGCTGGACGAAGGACGAGCACAAGCGGTTTCTCT CCGTGGCGGGACAGTTGGGCAAGAACAAGGAGAGCTGGAGATGGATATCT CAGGTTGTCGTTACCACGAGGTCGCCTGCCCAGGTTCGCACCCACGCGCA GAAGTACTTTCGGAAAATCGGTCAGGGGCTGCCATTTCCCGACGAGGTAC GCAAATCCTCCGTACGTACGTAGGTACACTAGAGACACGTTGTTGTTTGC GGAAGTAGCCACCTGCAGCGGAATTGGCTTGTGCGTTGTTTGGTGGAGGT GTGATGGTGGAGGGAAACCCCGGCCATAAATGTTCTAGTGGCGTCATGTT TCAGAGATAAATAGATGCTTTGACTATGTTCCTCTCTGTATGTGTCGAGT TCTCGGAAACACGTTTTACTTGAGTGCCAACGTAAAACAAGATAACTAAC CCGGTATCCATTCCGCTGTTACATCAATTGATTTTGGCTGGCATCAAGTT CCACCTACTTCGAAAGAGGTGTGCATGCATGTGTGTTTGGGTTGCTGTTG TTTTCTTCACATTTAAAACCGTTCCGGTCTCTGCTCAGTACCTTGTAACG TGCGTACTTGGCCGGCGCTATCACCGTGCGGTTTTGATCTTTTCTTGTCT CGAAACATTGAAACAATGTTTTGGGCTGTTGGCTATCCTTGTCGGCAGAC TACAAGTGTTTGGGATCGCTTATGCCACGCATACCACCAGACCAATTGGT CCCGTCAATCATCACACAATTCATCCCTTGGGGTCTGTCAGAGACTCCCC TTACCCCGAACAGCACTTGTCCTGGTATGTTGGTCCCACCGCCGGCTTTT CCACCCGAGGTGTCTCGGTGTCACCGCGATTTGCTTGGTCTATACTTGTT TGTTGGACACCTCCCGTTCCAAAGAAGTCGTGCACGCTTTTTCTTTGCTC CGTGGCAATGCTAGGGTTCATGTGTGGTGCTGCTTTCTTCCTACTTGTGG CACTGAGGAATGCCCCCTGCCCCCCCCTTTTCCGTGTTCATGTAGTAGCA GATATGCCGTTCATGAAGAGGGAAAGAAAAAATTAAAATGACTACGCTGG GCAAAGTTAAAAGGGAGCTATAGAGAGATGTTTAAGGCGTGGAATAGCCA GGAGAGGACGGTAGCTACACTGGGCTGTAGGAAGTGGGTTGAAAGGCGGG AAGTTCTATCGACCGGATGGATAGGGTAGGATAAAAAAATTGAACACTTT TGGCAACGTAGTAAGGTGGTCTGTCCTGTGGGAACAATGCTCCGTCCTCT CGAGGACACGTGGGCAACGGTCTATAATCGTCAAGTACCCGCCGCCCCTC CACCCCCCCCCACCCCGTGCGTCACCACTAAGCCGTACACCAACGACCGC GCTAACGACGGCGAGAGTGGCGAAGAAGGGCAAGAACAAGAAGAGGAGGA GGAAGAAGAAGAAGAAGAAAAAAAAGAAAGCGCCTCATCTGCTGCTAGTG GGGGGGCACCATTGTCACGACCCCCAACGGCCATGGCAACAACTCCCGAC GGTGCTGGACTGCCTCTCCCACCTATCGCTCTCTTTGGTGGGCAGATGAG GTTGGCAGGAGCACCAGCCATGGATTCTCTAGGCCCGGGTCGTATCGTGC CCTACCACGGCTACGAAGACGGCGACGGGGCCTCTACGGGGGATAGTTTC CCACACGCCATCGGTGCCCCCGCTCTGCCGCCGCTGTGCTTTCCCGGCGG GATCGCTCCCGGCTTCGGCGCCGGACAGGGCGGGCAAGACTCTCGTCTGG ACCCGCATGTAGCGGCGGCAGCGGCGGCGGAAACGGCGGCAGGGGCGGCT GCGCTCGGCCACGACTTAGACGGAGGCATGTTCCTGCCCATCGGCGGTGG GGGGACGTCATCGGCTCTGCCGCCGCTGTGGGCCGATGCTAGCATCGGAG ACGCCAGCGGGGGTGGCTTTCTTCTGGACAGCTGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig198:18183..20220-

>mRNA_Ecto-sp13_S_contig198.6413.1 ID=mRNA_Ecto-sp13_S_contig198.6413.1|Name=mRNA_Ecto-sp13_S_contig198.6413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:18183..20220- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGTTGATATAATCTCGTTGTGTGTACTTGCTGCATCACGCATCCT
CAGCCGCAACAAAGGCCGCTGGACGAAGGACGAGCACAAGCGGTTTCTCT
CCGTGGCGGGACAGTTGGGCAAGAACAAGGAGAGCTGGAGATGGATATCT
CAGGTTGTCGTTACCACGAGGTCGCCTGCCCAGGTTCGCACCCACGCGCA
GAAGTACTTTCGGAAAATCGGTCAGGGGCTGCCATTTCCCGACGAGGGCG
GGCAAGACTCTCGTCTGGACCCGCATGTAGCGGCGGCAGCGGCGGCGGAA
ACGGCGGCAGGGGCGGCTGCGCTCGGCCACGACTTAGACGGAGGCATGTT
CCTGCCCATCGGCGGTGGGGGGACGTCATCGGCTCTGCCGCCGCTGTGGG
CCGATGCTAGCATCGGAGACGCCAGCGGGGGTGGCTTTCTTCTGGACAGC
TGGTGA
back to top