mRNA_Ecto-sp13_S_contig198.6412.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig198.6412.1
Unique NamemRNA_Ecto-sp13_S_contig198.6412.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig198.6412.1 vs. uniprot
Match: D8LU59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU59_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.510e-32
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:   43 MRRSPSKAPTFRRGKGLGSIVTRVIREKRSSGGADVVVPRPLSGLRDEEASAALRVVGDYHMTQERADIANAGVCVREE 279
            MR SP KAPT  RGKGLGSIVTRVIREK SSG ADVVV R +SGLRD EASAALR V DYHMTQERADIANAG C+R+E
Sbjct:    1 MRGSPWKAPTDGRGKGLGSIVTRVIREKWSSGEADVVVLRLVSGLRDGEASAALRAVVDYHMTQERADIANAGACIRKE 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig198.6412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU59_ECTSI2.510e-3281.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig198contigEcto-sp13_S_contig198:14427..15154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000330.1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.262622-CDS-Ecto-sp13_S_contig198:14426..146541681462999.262622-CDS-Ecto-sp13_S_contig198:14426..14654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 14427..14654 +
1681462999.2741067-CDS-Ecto-sp13_S_contig198:15103..151541681462999.2741067-CDS-Ecto-sp13_S_contig198:15103..15154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 15104..15154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig198.6412.1prot_Ecto-sp13_S_contig198.6412.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig198 14427..15154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig198.6412.1

>prot_Ecto-sp13_S_contig198.6412.1 ID=prot_Ecto-sp13_S_contig198.6412.1|Name=mRNA_Ecto-sp13_S_contig198.6412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
SCATRIGQGGTESPMRRSPSKAPTFRRGKGLGSIVTRVIREKRSSGGADV
VVPRPLSGLRDEEASAALRVVGDYHMTQERADIANAGVCVREE
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mRNA from alignment at Ecto-sp13_S_contig198:14427..15154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig198.6412.1 ID=mRNA_Ecto-sp13_S_contig198.6412.1|Name=mRNA_Ecto-sp13_S_contig198.6412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:14427..15154+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTGCGCGACGCGTATTGGGCAAGGTGGCACGGAGTCGCCCATGCGAAG
GAGTCCGTCGAAAGCACCTACCTTTCGACGGGGTAAGGGTCTCGGGAGTA
TCGTCACTCGGGTGATCCGCGAAAAACGGTCCTCTGGCGGGGCGGATGTG
GTCGTCCCGAGGCCCTTGAGTGGACTCCGCGACGAAGAGGCATCTGCCGC
GCTTCGCGTTGTCGGCGACTATCATATGGTGAGCACTGGTCATCACACCT
ACGTCATAGGCCCCGCGCCAAAGGTCGTGAATGTACCGCTTAAATGTGGC
CCCCGTGCTTTGTATCTCTAACAAACCGTCGTACCTGCGGTTGGGGAGAT
CGCTCCGAGTGGGTGCTGTACACATGACTTCTTCAATATAGACGGTGCAC
GATGTGGAAACGAGTCTCTTTGTTGGTGTTTCCTCCTCGGTAGCCATCCA
TGCATCCATGCCGTACGGCGGTTCGACTGCTTTGCCGATGTCTATCTCGT
ACGGGCATCCCCTGAGAGTTCGCGTCCATGTTGTCTGATAATGGCGGAAG
TAATACTCATCTTCCCTCGTTACCATATGTAACAAGAATGTGTTGCTTTT
CAAAGCAAGGTGCGAACCTGCCCAATCTCCAACGCATCCCCGTCGACCCG
CTCCCGGGTTTGTTTCTTGTGCTGTAGACCCAAGAACGCGCGGATATCGC
CAACGCCGGAGTATGCGTTCGGGAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig198:14427..15154+

>mRNA_Ecto-sp13_S_contig198.6412.1 ID=mRNA_Ecto-sp13_S_contig198.6412.1|Name=mRNA_Ecto-sp13_S_contig198.6412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:14427..15154+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTGCGCGACGCGTATTGGGCAAGGTGGCACGGAGTCGCCCATGCGAAG
GAGTCCGTCGAAAGCACCTACCTTTCGACGGGGTAAGGGTCTCGGGAGTA
TCGTCACTCGGGTGATCCGCGAAAAACGGTCCTCTGGCGGGGCGGATGTG
GTCGTCCCGAGGCCCTTGAGTGGACTCCGCGACGAAGAGGCATCTGCCGC
GCTTCGCGTTGTCGGCGACTATCATATGACCCAAGAACGCGCGGATATCG
CCAACGCCGGAGTATGCGTTCGGGAAGAG
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