mRNA_Ecto-sp13_S_contig198.6411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig198.6411.1
Unique NamemRNA_Ecto-sp13_S_contig198.6411.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D8LU61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU61_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 1.790e-155
Identity = 225/256 (87.89%), Postives = 226/256 (88.28%), Query Frame = 1
Query:    1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYTDDRLDDGEGHEQNEEEDQEG-----GRSTAAGEAPPPQIKGTPDGARCHSPPSSGLMAVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVASAETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWSGIGDVSGASCGGSLSMPYDGGSGSPLDNW 753
            RNKGRWTKDEHERFLSV GQL KTTESWK ISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY DDRLDDGEGHEQNE           GRSTAAGEAPPPQIK TPDGARCHSPPSSGLM VVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPG TP Q  QDSSLDPHVA A+AET AGAAALGHDLDGGMFLPSGG GE  SA PPLPPLWS IGD SGASCGGSLSMPYDG SGSPLDNW
Sbjct:    4 RNKGRWTKDEHERFLSVVGQLGKTTESWKLISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYADDRLDDGEGHEQNEXXXXXXXXXXXGRSTAAGEAPPPQIKATPDGARCHSPPSSGLMVVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGFTPKQDGQDSSLDPHVAAAAAETAAGAAALGHDLDGGMFLPSGGSGEGSSAAPPLPPLWSDIGDSSGASCGGSLSMPYDGRSGSPLDNW 259          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5L659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L659_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 9.770e-137
Identity = 204/256 (79.69%), Postives = 204/256 (79.69%), Query Frame = 1
Query:    1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYTDDRLDDGEGHEQNEEEDQEGGRSTAAGEAPPPQIKGTPDGARCHSPPSSGLMAVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVASAETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWSGIGDVSGASCGGSLSMPYDGGSGSPLDNWYGKRW 768
            RNKGRWTKDEHERFLSVAGQL KTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDE                                   QI  TPD ARCHSPPSSGLMAVVKVPSVVSLINSYDD GGFPQAGG PALPPSLCSPCGLFPG TP QGWQDSSLDPHVA ASAET AGAAALGHDLD GMFLPSGG GE  SAPPPLPPLWSGIGD SGASC GSLSMPYDG SGSPLDNWYGKRW
Sbjct:   20 RNKGRWTKDEHERFLSVAGQLGKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDENEXXXXXXXXXXX-----------XXXXXXXXXXXQIMATPDDARCHSPPSSGLMAVVKVPSVVSLINSYDDCGGFPQAGGIPALPPSLCSPCGLFPGFTPEQGWQDSSLDPHVAAASAETAAGAAALGHDLDRGMFLPSGGSGEGSSAPPPLPPLWSGIGDASGASCCGSLSMPYDGSSGSPLDNWYGKRW 264          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D8LU58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU58_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.480e-39
Identity = 103/254 (40.55%), Postives = 113/254 (44.49%), Query Frame = 1
Query:    1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYTDDRLDDGEGHEQNEEEDQEGGRSTAAGEAPPPQIKGTPDGARCHSPPSSGLMAVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVA-SAETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWS--GIGDVSGASCGGSLSMPYDGGSGSPLDNW 753
            RNKGRWTKDEHERFLSVAGQL K  ESW+WIS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE                                                                                                       G QD+SLDPHVA A +AET AGAAALGHDLDGGMFLPSG  G   +    L PLW+   +GD              DGG G PLD+W
Sbjct:   26 RNKGRWTKDEHERFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE-------------------------------------------------------------------------------------------------------GGQDTSLDPHVAAAVAAETAAGAAALGHDLDGGMFLPSGSGGASSA----LAPLWADASVGDA-------------DGG-GFPLDSW 158          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5JBL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.190e-30
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1
Query:    1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDE 192
            RNKGRWTKDEHERFL VAGQL K  ESWKWIS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE
Sbjct:   49 RNKGRWTKDEHERFLCVAGQLGKNKESWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 112          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5JA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA96_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.650e-25
Identity = 80/171 (46.78%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  310 TPDGA-RCHSPPSS---GLMAVVKVPSVVSL-------INSYDDGG------GFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVASA-ETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWS--GIGDVSGASCGGSLSMPYDGGSGSPLDNWYGK 762
            TPDGA R   PP++   G M +   P++ SL        + Y+DGG       FP A G PALPP LC P G+     PG+G QDS LDPHVA A+A ET AGAAALGHDLD GMFLPSGG G   +    LPPLW+  G+GD               GG G  L++W  K
Sbjct:    6 TPDGAGRYPLPPTARFGGQMRLAGAPAMDSLGPGRIVPSHGYEDGGRASTGGSFPHAIGAPALPP-LCFPDGIASSFAPGEGGQDSCLDPHVAAAAAAETAAGAAALGHDLDEGMFLPSGGGGGASA----LPPLWADAGVGDA--------------GGGGFLLESWPSK 157          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D8LPL1_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.820e-8
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 198
            +NKG+WT++EHE FLS   Q    + +       +V TRS  Q+RTHAQKYF +I +G  FP +PY
Sbjct:    6 KNKGKWTREEHEAFLSGLWQHESNSHA-------LVPTRSALQIRTHAQKYFDKIERGEKFPAQPY 64          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D7FXQ4_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.240e-7
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 198
            RNKGRWT +EH  FL    +L K ++     S  ++ TR+  QVRTHAQKYF ++ +G PFP+EPY
Sbjct:    5 RNKGRWTHEEHAEFLRGV-ELFKRSDLEAVAS--MLPTRTILQVRTHAQKYFDKVDKGEPFPNEPY 67          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: UPI000E705CD7 (transcription factor MYBS1-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E705CD7)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-6
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   16 WTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIG 168
            WTKDEH +FL    Q SK    W+ IS+F + +R+P QV +HAQKYFQ  G
Sbjct:   41 WTKDEHRKFLEGLEQFSKG--DWRSISRFFIVSRTPTQVASHAQKYFQHQG 89          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5KVV5_9PHAE (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.740e-6
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 198
            RNKGRWT +EH  FL    +L K ++     S  ++ TR+  QVRTHAQKYF ++ +G PFP EPY
Sbjct:    5 RNKGRWTHEEHAVFLRGV-ELFKRSDLEAVAS--MLPTRTILQVRTHAQKYFDKVDKGEPFPTEPY 67          
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: UPI000CE1DF32 (probable transcription factor At5g61620 n=2 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1DF32)

HSP 1 Score: 55.8 bits (133), Expect = 2.460e-6
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   13 RWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYF 156
            RWT++EH+ FLS   QL K    WK IS+  VTT++PAQ+ +HAQKYF
Sbjct:   84 RWTEEEHKLFLSGLNQLGK--HDWKEISQKFVTTKTPAQIASHAQKYF 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU61_ECTSI1.790e-15587.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L659_9PHAE9.770e-13779.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU58_ECTSI2.480e-3940.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBL6_9PHAE7.190e-3085.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA96_9PHAE1.650e-2546.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPL1_ECTSI1.820e-846.97HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
D7FXQ4_ECTSI3.240e-750.00HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
UPI000E705CD71.110e-652.94transcription factor MYBS1-like n=1 Tax=Papaver so... [more]
A0A6H5KVV5_9PHAE1.740e-650.00HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
UPI000CE1DF322.460e-656.25probable transcription factor At5g61620 n=2 Tax=Qu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig198contigEcto-sp13_S_contig198:5019..6307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score446.4
Seed ortholog evalue9e-123
Seed eggNOG ortholog2880.D8LU61
Model size783
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Myb-like DNA-binding domain
EggNOG OGs2EA1V@1,2SGBG@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-16_000350.1
Cds size783
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.2093284-CDS-Ecto-sp13_S_contig198:5018..56091681462999.2093284-CDS-Ecto-sp13_S_contig198:5018..5609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 5019..5609 -
1681462999.2200863-CDS-Ecto-sp13_S_contig198:6115..63071681462999.2200863-CDS-Ecto-sp13_S_contig198:6115..6307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 6116..6307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig198.6411.1prot_Ecto-sp13_S_contig198.6411.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig198 5019..6307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig198.6411.1

>prot_Ecto-sp13_S_contig198.6411.1 ID=prot_Ecto-sp13_S_contig198.6411.1|Name=mRNA_Ecto-sp13_S_contig198.6411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQK
YFQRIGQGRPFPDEPYTDDRLDDGEGHEQNEEEDQEGGRSTAAGEAPPPQ
IKGTPDGARCHSPPSSGLMAVVKVPSVVSLINSYDDGGGFPQAGGTPALP
PSLCSPCGLFPGCTPGQGWQDSSLDPHVAVASAETVAGAAALGHDLDGGM
FLPSGGCGEELSAPPPLPPLWSGIGDVSGASCGGSLSMPYDGGSGSPLDN
WYGKRWDAAC*
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mRNA from alignment at Ecto-sp13_S_contig198:5019..6307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig198.6411.1 ID=mRNA_Ecto-sp13_S_contig198.6411.1|Name=mRNA_Ecto-sp13_S_contig198.6411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:5019..6307- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAACAAAGGTCGCTGGACGAAGGACGAGCACGAGCGGTTTCTCTCCGT GGCGGGACAGTTGAGCAAGACAACAGAAAGCTGGAAGTGGATTTCTAAGT TTGTCGTAACGACGAGGTCGCCTGCTCAGGTCCGCACCCACGCGCAGAAA TATTTTCAGAGAATTGGTCAGGGGCGACCATTTCCAGACGAGGTACGTAC AGTAGGTGCGTACAGAGCGGGCCCGCAACTTAGGCTCAAATTTCTTTCTT CGACATCGCTGTAGCGCACAATGTTGTATTATTTTACTGGTAGAGCTTTG TGTGGGATGCACCCCTGAGCTGACTATCCTTTTCCCTGGCGTCATATCGT TTGTGTTTTGATCTATGGCCCGTACCGTGTAGACCCGTCGTCGGTCGCGT TCTCGATTACGCTGAAAAACATCTGCTATCTATTCGGTCCCTTTCCATCG ACAAAGCCACCTATTGGACGAACCACCCGTTAGTTTGGTTTGTAGTGTCA CGGCACACTTCTTGGGGTATATTTCTTGGACACTCCTCGTCGTTTTGGTG GAACCCCGCAAGCTCTTTTTGCTCTGCGGGAACGCGAGGGTTCATGTGGT ATGCTCCTCTACCGCCTTCCTTCCATTGTAGTGCCTTCCATCGTGGTGAG AAACATTCTTTCTCTTCCTCTTCCTCACCGCCGCGAATCGCCATGAAGCC GTACACCGATGATCGTCTTGACGATGGCGAGGGACATGAACAGAACGAAG AAGAAGACCAAGAGGGCGGCCGGTCTACCGCTGCAGGGGAAGCACCACCA CCGCAAATCAAGGGAACTCCCGACGGTGCTCGTTGCCACTCGCCCCCGTC CAGTGGACTGATGGCGGTGGTAAAGGTGCCGTCCGTGGTCTCGCTGATCA ATAGCTACGACGACGGTGGCGGTTTCCCCCAGGCCGGCGGCACCCCCGCT CTGCCACCGTCGTTGTGTTCCCCGTGCGGGCTCTTTCCAGGATGCACCCC CGGACAGGGCTGGCAAGACTCTTCTCTGGACCCGCACGTGGCGGTAGCGT CGGCGGAAACGGTGGCAGGGGCGGCTGCGCTTGGCCACGATTTAGACGGA GGTATGTTCTTGCCCAGCGGCGGTTGTGGAGAGGAATTATCGGCTCCACC ACCGCTGCCGCCGCTGTGGAGCGGCATCGGAGATGTCAGCGGGGCCAGCT GTGGCGGATCGCTCTCGATGCCCTATGACGGGGGCAGCGGCTCTCCTCTG GACAACTGGTACGGAAAAAGATGGGATGCGGCGTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig198:5019..6307-

>mRNA_Ecto-sp13_S_contig198.6411.1 ID=mRNA_Ecto-sp13_S_contig198.6411.1|Name=mRNA_Ecto-sp13_S_contig198.6411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:5019..6307- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAACAAAGGTCGCTGGACGAAGGACGAGCACGAGCGGTTTCTCTCCGT
GGCGGGACAGTTGAGCAAGACAACAGAAAGCTGGAAGTGGATTTCTAAGT
TTGTCGTAACGACGAGGTCGCCTGCTCAGGTCCGCACCCACGCGCAGAAA
TATTTTCAGAGAATTGGTCAGGGGCGACCATTTCCAGACGAGCCGTACAC
CGATGATCGTCTTGACGATGGCGAGGGACATGAACAGAACGAAGAAGAAG
ACCAAGAGGGCGGCCGGTCTACCGCTGCAGGGGAAGCACCACCACCGCAA
ATCAAGGGAACTCCCGACGGTGCTCGTTGCCACTCGCCCCCGTCCAGTGG
ACTGATGGCGGTGGTAAAGGTGCCGTCCGTGGTCTCGCTGATCAATAGCT
ACGACGACGGTGGCGGTTTCCCCCAGGCCGGCGGCACCCCCGCTCTGCCA
CCGTCGTTGTGTTCCCCGTGCGGGCTCTTTCCAGGATGCACCCCCGGACA
GGGCTGGCAAGACTCTTCTCTGGACCCGCACGTGGCGGTAGCGTCGGCGG
AAACGGTGGCAGGGGCGGCTGCGCTTGGCCACGATTTAGACGGAGGTATG
TTCTTGCCCAGCGGCGGTTGTGGAGAGGAATTATCGGCTCCACCACCGCT
GCCGCCGCTGTGGAGCGGCATCGGAGATGTCAGCGGGGCCAGCTGTGGCG
GATCGCTCTCGATGCCCTATGACGGGGGCAGCGGCTCTCCTCTGGACAAC
TGGTACGGAAAAAGATGGGATGCGGCGTGTTGA
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