mRNA_Ecto-sp13_S_contig19797.6410.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19797.6410.1
Unique NamemRNA_Ecto-sp13_S_contig19797.6410.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19797.6410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19797contigEcto-sp13_S_contig19797:257..1266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size335
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.1104996-CDS-Ecto-sp13_S_contig19797:256..3861681462999.1104996-CDS-Ecto-sp13_S_contig19797:256..386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19797 257..386 +
1681462999.1221292-CDS-Ecto-sp13_S_contig19797:1063..12661681462999.1221292-CDS-Ecto-sp13_S_contig19797:1063..1266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19797 1064..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19797.6410.1prot_Ecto-sp13_S_contig19797.6410.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19797 257..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19797.6410.1

>prot_Ecto-sp13_S_contig19797.6410.1 ID=prot_Ecto-sp13_S_contig19797.6410.1|Name=mRNA_Ecto-sp13_S_contig19797.6410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
GAGAAPISGAVSRTASLEGDGESDGEEPVPSQAEDLCEDSDDPGDAFGDP
VNNEDIGGDWEDDEEQQDPPLADFRRCVKAVHPWKSAILSDMRDWRDSLS
RLQETRADGLP
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mRNA from alignment at Ecto-sp13_S_contig19797:257..1266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19797.6410.1 ID=mRNA_Ecto-sp13_S_contig19797.6410.1|Name=mRNA_Ecto-sp13_S_contig19797.6410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19797:257..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCTGGCGCTGCGCCGATTTCGGGCGCGGTCAGCAGGACGGCGTCTTT
GGAGGGTGACGGGGAGAGTGACGGGGAGGAACCCGTCCCATCCCAGGCCG
AAGACCTCTGCGAGGACTCAGACGACCCTGGCAAGGCCAAAGCTAGGATC
CACATTTCCGACGATCGAGCACTAGGTGGCTATCATGTACATCATGAACC
TTCAACATTTTTCCAAGTTTTTATTGATCGACTACCGACTTTCGACTCGT
ACTGAAAAGCTGACGGTCGTCTGCGATTCCATTCCTGCTATTCGTACATG
GTATACCTACACCCCGACATCCACCCGTATGCATACTTGTCTGTAATCCA
CGGCAACGGCACGGCCTTGCAACGTCGCTTGTGACACCTCGCATACGTCG
TACTTTGCCGCGATCGGTACCGATCGAATTTTTCAATTATATCTTTCGTA
CACCCACAACCTAACCCTTTTGCCTACATTCCCGAAGCTCATATGTCATC
GGTCCGACCGAACATGGTAACCAGAGTCGAGAAGAGAGCAACGTCATCTT
CTACCGTCATTTGTGCCGCGTTCGCAACGCTACATGTTTTCTCGTCCTCC
CCGGACGCCCCTAACCGTAGATTTGGAAGCGGACACCGTAGATTTGGGAG
CGGTCACGTTGAGGGCGGAGCTGTCTCACTGAAGCTGGATATATTGTGCC
GGAGGGGCCCTAGTAAGACTGCGTAGAGCGTGTCCATCTGTCGTCGTTAT
GCTGTGAACGCAACTCGGTAACAACGCATCCTGACTTTATGATCGTCGTC
ACCCAAGGTGACGCTTTCGGGGATCCCGTCAACAACGAGGACATAGGCGG
TGATTGGGAGGATGACGAAGAACAACAAGACCCTCCTCTAGCGGACTTCC
GCCGCTGCGTCAAGGCTGTGCATCCGTGGAAATCCGCAATCTTATCCGAC
ATGCGGGATTGGCGGGACTCCCTCTCTCGCCTTCAAGAGACCCGCGCCGA
CGGCCTGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19797:257..1266+

>mRNA_Ecto-sp13_S_contig19797.6410.1 ID=mRNA_Ecto-sp13_S_contig19797.6410.1|Name=mRNA_Ecto-sp13_S_contig19797.6410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19797:257..1266+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCTGGCGCTGCGCCGATTTCGGGCGCGGTCAGCAGGACGGCGTCTTT
GGAGGGTGACGGGGAGAGTGACGGGGAGGAACCCGTCCCATCCCAGGCCG
AAGACCTCTGCGAGGACTCAGACGACCCTGGTGACGCTTTCGGGGATCCC
GTCAACAACGAGGACATAGGCGGTGATTGGGAGGATGACGAAGAACAACA
AGACCCTCCTCTAGCGGACTTCCGCCGCTGCGTCAAGGCTGTGCATCCGT
GGAAATCCGCAATCTTATCCGACATGCGGGATTGGCGGGACTCCCTCTCT
CGCCTTCAAGAGACCCGCGCCGACGGCCTGCCC
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