mRNA_Ecto-sp13_S_contig19793.6409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 496 bits (1276), Expect = 1.540e-171 Identity = 265/289 (91.70%), Postives = 273/289 (94.46%), Query Frame = 1
Query: 1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQ 867
+VVLEHFDHD+GEASRFTGWLTLVSCIVQLIAIP LCGASDVIGRRAILAGALALTAVSS SL LAPSSI VVSVCQVVSGVANAILPISQA++IDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMS LGVLSLKFFGWEETAPAA QG GG+ AN SA G WKKLCARGSSSRIVNPFSVLKVFLESS LMQLAVVLACFSLSLNVFSVY NYFDFRYHWSPLDIS + STFGIL ALTSG+LIRFLVPKRLS+GRGVLLGLALQ
Sbjct: 73 KVVLEHFDHDNGEASRFTGWLTLVSCIVQLIAIPTLCGASDVIGRRAILAGALALTAVSSFSLGLAPSSIAVVSVCQVVSGVANAILPISQAVVIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSVLGVLSLKFFGWEETAPAATQGAGGATANASAGGGWKKLCARGSSSRIVNPFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQ 361
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 189 bits (480), Expect = 1.220e-51 Identity = 131/346 (37.86%), Postives = 181/346 (52.31%), Query Frame = 1
Query: 1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAP--------------------------------------------AAAQGTGGSAANTSA------------RGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQV 870
+++L DDGEAS++ GWL ++QLI +P + G SDV+GR+A++ A L A S +L S+ +VC++ + V ILP+SQAI+IDLS G THGLG+ A L S G ++GGSLTE H G AC +SA+ S +LSL FGW ETAP AA GG A +A +G + AR S + +NP SVLKVFLES L+++A F LSLNVF+ NY D+R+ W+P +IS + +T+ IL AL G +IRF+VPKRL+ +G L G+++QV
Sbjct: 96 KIILLSCGGDDGEASKYRGWLAAGVSVIQLIFVPAISGWSDVVGRKAVVCFAQVLHAGSVLALAAMADSLAWATVCRLATSVCIVILPVSQAIMIDLSP----DRGKGATHGLGIAFGASALGFSAGDIIGGSLTEHHRGAACLVSAAFSAASLLSLALFGWRETAPPLVGEGWQRWLWWRVEEQERIDDAVVGMNDDDDVGANRGICGRDVAAVVQGGDAVEATASVDSFVWDDDGKQGAGGRGRARRSGRKQLNPLSVLKVFLESRALLRIACSYFLFVLSLNVFATGYNYVDYRFGWTPSEISYFFATYNILMALAGGWVIRFIVPKRLTEEKGALFGISVQV 437
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A6H5L7V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V6_9PHAE) HSP 1 Score: 123 bits (308), Expect = 2.600e-29 Identity = 70/167 (41.92%), Postives = 100/167 (59.88%), Query Frame = 1
Query: 1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAP 501
+++L DDGEAS++ GWL ++QL+ +P + G+SDV+GR+ ++ A L A S +L S+ +VC++ + V ILP+SQAI+IDLS G THGLG+ A L S G ++GGSL E H G AC +SA+ + +LSL FGW ETAP
Sbjct: 56 KIILLSSGGDDGEASKYRGWLAAGVSVIQLLFVPAISGSSDVVGRKVVVCFAQVLHASSVLALAAMADSLVWATVCRLATSVCIVILPVSQAIMIDLSP----DRGKGATHGLGIAFGACALGFSAGDIIGGSLAEHHRGAACLVSAAFATASLLSLMLFGWRETAP 218
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A835YXD6_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD6_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 3.090e-19 Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 1
Query: 1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLS-HWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLG--------------VLSLKFFGWEET 495
+VVL ++ DDG+ + F GW++ S ++Q + P+L + DV GRR +L A A+ +P++I + + V++G+ ++P+SQAII D++ H GAAA HG G+I FGL + +GP+LGG LT H AC+ +A + L +L +GWEET
Sbjct: 210 KVVLSYYGGDDGKTASFLGWVSGGSSMLQFVLSPSLTASCDVRGRRGLLLAAAGAQALICFIWGFSPNNIGLAAAVAVITGMCGVVIPVSQAIISDVTRHDGAAA-----AHGFGVIAGTFGLGLCIGPLLGGWLTNVHRPAACFTAAGAALLAHCWWRWWAGTALLALLVATVWGWEET 384
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A426U4E4_9CHLR (MFS transporter n=1 Tax=Candidatus Viridilinea halotolerans TaxID=2491704 RepID=A0A426U4E4_9CHLR) HSP 1 Score: 71.2 bits (173), Expect = 2.610e-10 Identity = 79/278 (28.42%), Postives = 124/278 (44.60%), Query Frame = 1
Query: 7 VLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAP--SSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLA-VVLACFSLSLNVFSVYNNYFDF---RYHWSPLDISSYLSTFGILQALTSGVLIRFLVPK 822
+L H+ E++ G L+ + ++QL+A P L SD IGRR +L G+L ++ + L L S+ ++ + GVA A +P QA I D + E T LGL+GAAFG+ + VGP GG L+ + +A ++ LG E+ PA R R R ++P S+ + L L ++LA F L+L + +N+ F R+ W PLD + + G T GVL+ L+P+
Sbjct: 31 LLPFIVHEQAESALVVGMLSSLYALMQLLAAPVLGTLSDRIGRRPVLLGSLLASSCAYALLGLGGMCGSLLLIGLAVAWGGVAGASIPTVQAYISDRAK------SSERTRSLGLVGAAFGIGLMVGPAAGGLLSVYGLNVPAFAAALLA-LGNALFALVALPESLPA------------ERRVR-----------RSLSPTSIASQIGYAVALPNLRPLLLAIFLLNLAFAGLQSNFPIFSSTRFGWDPLDNGIFFAFVGFCGVFTQGVLVGRLLPR 278
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A3U1K1_PSEBH (Putative transport transmembrane protein n=1 Tax=Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) TaxID=252305 RepID=A3U1K1_PSEBH) HSP 1 Score: 70.5 bits (171), Expect = 4.950e-10 Identity = 77/281 (27.40%), Postives = 126/281 (44.84%), Query Frame = 1
Query: 37 EASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDFR-YHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQVLG 876
+AS GW+ + Q + P + SD GRR++L A+ AV LAP+ ++ + ++++G+ A I+ A + D++ A G+IGAAFGL +GP LGG L E W +A+++ FG+ + G R S R NPF VL+VF ++ L +VL + + V+ ++ + W+ I + L+ FGI+ ALT G+L LV +R+ R ++ GL + LG
Sbjct: 49 DASVIGGWMFAAYALAQFLFGPLIGSLSDAYGRRSLLLLAIGGLAVDYVFSALAPTFWLLI-LGRIIAGICGASHIIATAYLTDITPPEGRA------RAFGMIGAAFGLGFVIGPALGGLLGEFGPRVPFWAAAALAAANFA----FGYAVLPESLPPGK-----------------RRPLSLRRANPFGVLRVFRGYPSVLPLTMVLMLYFFAGQVYPTLWTFWGIAAFGWTEATIGATLALFGIMSALTEGLLSGPLV-RRMGESRVIVAGLIVAALG 300
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: UPI0013004A95 (TCR/Tet family MFS transporter n=1 Tax=Pelagibacterium sediminicola TaxID=2248761 RepID=UPI0013004A95) HSP 1 Score: 70.1 bits (170), Expect = 7.070e-10 Identity = 81/291 (27.84%), Postives = 134/291 (46.05%), Query Frame = 1
Query: 4 VVLEHFDHDD-GEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVF-SVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQV 870
++LE D D+ A+ G+L V +Q + P L SD GRR +L +L ++ + AP+ + + V +V+SG+ A + + A + D++ + + GLIGAAFGL + VGPV+GG L E +L+A+++ V+ FF E+ K R + NPF + F + ++ L L F+L+ + +V+N Y ++ WSP + L FGIL AL+ VL+ + + + +L GLAL V
Sbjct: 35 LILELTDGDNVANAAVIGGYLVFVYASMQFLFSPILGNLSDRWGRRPVLLLSLVGLSIDYFLMAWAPT-LAWLFVGRVLSGICGAAMGTATAYVADITPKE------KRSQRFGLIGAAFGLGLIVGPVIGGELGEFGPRAPFYLAATLAATNVV-FGFFVLPESL--------------------SKFRRRRFDLKRANPFGAILAFRHTPIVLVLLGALFLFALAGQTYPNVWNFYTIRQFDWSPSQVGRSLGVFGILFALSQAVLVGPAI-RYFGVAATILAGLALAV 296
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A1C2HBU0_9RHOB (ABC transporter permease n=2 Tax=Thioclava sp. SK-1 TaxID=1889770 RepID=A0A1C2HBU0_9RHOB) HSP 1 Score: 68.2 bits (165), Expect = 2.650e-9 Identity = 72/284 (25.35%), Postives = 123/284 (43.31%), Query Frame = 1
Query: 7 VLEHFDHDD-GEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDF-RYHWSPLDISSYLSTFGILQALTSGVLI-----RFLVPKRLSMG 837
++E H D +A+R GW+ + Q + P + SD GRR +L A+ + LAPS + + + ++++G+ + I+ A + D+S G +GAAFGL +GP LGG L E W +A +S L + F E+ P +A+ R + R NP VL VF ++ + VL + + +V+ ++ ++ WS + L+ FG++ ALT G+L RF P+ ++ G
Sbjct: 20 LIEQVGHLDLAQAARIGGWMFAGFSLAQFLCAPTMGALSDRFGRRPLLLLAVGGLGLDYLFHALAPS-LVFLFIGRIIAGICGSSFVIANAYLADIST------PEHRARAFGWMGAAFGLGFILGPALGGLLGEFGPRAPFWAAAGLS-LANFAFGLFALPESLPPSAR--------------------RPMNWREANPLGVLAVFRRHPGVLPMTGVLVLYFFATSVYVAIWPFWGMQKFGWSEATVGITLAAFGLVMALTQGLLTGPVGKRFGEPRVIAAG 275
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A534X623_9DELT (TCR/Tet family MFS transporter n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534X623_9DELT) HSP 1 Score: 65.9 bits (159), Expect = 1.660e-8 Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 37 EASRFT-GWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLT 405
+A+ FT G L V ++QLI P SD IGRR +L LA +A+S L A + V+ + +V++GVA A +P++QA I D++ G GE G+GLIGAAFGL + +GP LGG L+
Sbjct: 41 KATPFTAGVLIAVYSLMQLIFAPVWGRVSDDIGRRPVLLLCLAGSAMSYLLLAAA-WRLEVLFLARVLAGVAGASIPVAQAYIADVT------GPGERARGMGLIGAAFGLGMVIGPALGGGLS 157
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A2T6DJ54_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Opitutaceae bacterium EW11 TaxID=2161865 RepID=A0A2T6DJ54_9BACT) HSP 1 Score: 65.9 bits (159), Expect = 1.740e-8 Identity = 77/295 (26.10%), Postives = 128/295 (43.39%), Query Frame = 1
Query: 4 VVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLA----VVLACFSLSLNVFSVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMG--RGVLLGLALQV 870
+V E + S G L V ++Q I P L SD IGRR ++ +LA +V + AP+ +T + V +++SG +L + A + D++ + GL+GAAFG+ + VGP+LGG L + W +A + L L F E P + WK+ NP L+ + +A +++ C ++ ++S + Y RYHW+ + L G+ A+ +L+R +VP +MG R VL GLA+ +
Sbjct: 36 LVTEFQGGEVSAGSHAYGLLVGVFALLQFIGSPILGSLSDRIGRRKVILLSLAGASVDYVIMANAPN-MTWLFVARMISGFTAGVLATANAYVADVTP------PEKRAQNYGLLGAAFGIGLIVGPLLGGMLGAINLRLPFWFAAGCAALNWLYGYFVLPESLKPEHRRSFS-----------WKR----------ANPVGALRALGRFPAVRSMANAYFILMLCQAM---LYSTWVLYMGHRYHWTTSQVGLSLGLAGVTSAIVQALLVRRIVP---AMGDERAVLFGLAVGI 296 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19793.6409.1 >prot_Ecto-sp13_S_contig19793.6409.1 ID=prot_Ecto-sp13_S_contig19793.6409.1|Name=mRNA_Ecto-sp13_S_contig19793.6409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAback to top mRNA from alignment at Ecto-sp13_S_contig19793:1293..3081+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19793.6409.1 ID=mRNA_Ecto-sp13_S_contig19793.6409.1|Name=mRNA_Ecto-sp13_S_contig19793.6409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19793:1293..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19793:1293..3081+ >mRNA_Ecto-sp13_S_contig19793.6409.1 ID=mRNA_Ecto-sp13_S_contig19793.6409.1|Name=mRNA_Ecto-sp13_S_contig19793.6409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19793:1293..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |