mRNA_Ecto-sp13_S_contig1979.6408.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1979.6408.1
Unique NamemRNA_Ecto-sp13_S_contig1979.6408.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1979.6408.1 vs. uniprot
Match: D8LC50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC50_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.230e-36
Identity = 128/152 (84.21%), Postives = 130/152 (85.53%), Query Frame = 1 
Query:    1 MCPSPPLSGKFLTQRKILFDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKRSYDDDRLEAVSKDELSALKGNVIYPRARRKAAIASQRRTASEIGKFVGGAADDDDXXXSDEDGELGGNXXXASAAVADGESEEEAELEF 456
            MC SPPLSG FL QR    DE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKRSYDDDRLEAVSKDELSALKGN+IYPRARRKAAIASQRRTASEIGKFVGGAAD+DDXXXSDEDGEL   XXX           EEAELEF
Sbjct:    1 MCSSPPLSGDFLAQRD---DEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKRSYDDDRLEAVSKDELSALKGNIIYPRARRKAAIASQRRTASEIGKFVGGAADEDDXXXSDEDGELXXXXXXXXXXXXXXXXXEEAELEF 149
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BLAST of mRNA_Ecto-sp13_S_contig1979.6408.1 vs. uniprot
Match: A0A6H5J8X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.040e-33
Identity = 79/93 (84.95%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:  178 KAKRSYDDDRLEAVSKDELSALKGNVIYPRARRKAAIASQRRTASEIGKFVGGAADDDDXXXSDEDGELGGNXXXASAAVADGESEEEAELEF 456
            KAKRSYDDDRLEAVSKDELSALKGNVIYPRARRKAAIASQRRTASEIGKFVGGAADDD XXXSDEDGELGG XXX            EAELEF
Sbjct:  149 KAKRSYDDDRLEAVSKDELSALKGNVIYPRARRKAAIASQRRTASEIGKFVGGAADDDXXXXSDEDGELGGXXXXXXXXXXXXXXXXEAELEF 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1979.6408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC50_ECTSI2.230e-3684.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8X7_9PHAE7.040e-3384.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1979contigEcto-sp13_S_contig1979:12947..14447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size819
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_004470.1
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.984206-UTR-Ecto-sp13_S_contig1979:12946..133061681462998.984206-UTR-Ecto-sp13_S_contig1979:12946..13306Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1979 12947..13306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.997436-CDS-Ecto-sp13_S_contig1979:13306..135391681462998.997436-CDS-Ecto-sp13_S_contig1979:13306..13539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1979 13307..13539 -
1681462999.0070064-CDS-Ecto-sp13_S_contig1979:14101..142701681462999.0070064-CDS-Ecto-sp13_S_contig1979:14101..14270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1979 14102..14270 -
1681462999.0170555-CDS-Ecto-sp13_S_contig1979:14390..144471681462999.0170555-CDS-Ecto-sp13_S_contig1979:14390..14447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1979 14391..14447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1979.6408.1prot_Ecto-sp13_S_contig1979.6408.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1979 13307..14447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1979.6408.1

>prot_Ecto-sp13_S_contig1979.6408.1 ID=prot_Ecto-sp13_S_contig1979.6408.1|Name=mRNA_Ecto-sp13_S_contig1979.6408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MCPSPPLSGKFLTQRKILFDEDEDEQEEEEASGSGGGKGKGKGKGKGTAV
AEKERRPKKKAKRSYDDDRLEAVSKDELSALKGNVIYPRARRKAAIASQR
RTASEIGKFVGGAADDDDDDDSDEDGELGGNLGGASAAVADGESEEEAEL
EF*
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mRNA from alignment at Ecto-sp13_S_contig1979:12947..14447-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1979.6408.1 ID=mRNA_Ecto-sp13_S_contig1979.6408.1|Name=mRNA_Ecto-sp13_S_contig1979.6408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1979:12947..14447- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTCCCTCCCCGCCCCTTTCCGGGAAATTTTTAACCCAGCGCAAGAT
TTTGTTTGTGTATCGTGGCCTAAAAACACGGCGCCCGCTTGGTAGTGTAC
CGCTTTCATCTCTTGGATGAATTCTGTCGTGTTTCTTGCTCCCTTCCCTC
CTCCGTATTCGTCCAATCAAAGGTGAGGATGAAGACGAAGACGAGCAAGA
AGAGGAAGAAGCCAGCGGCAGCGGAGGGGGCAAGGGGAAGGGAAAAGGGA
AGGGGAAGGGGACGGCGGTCGCGGAGAAGGAGAGACGACCCAAGAAAAAG
GCCAAAAGAAGCTACGACGACGACCGCCTCGAAGCGGTTTCAAAAGGTGC
AAAATTAGTTCGGGGAGAAGGAACAACAACGACCACTGCGTGTGCCACTG
CTCGTCTTAAGTTTACGTCATGGGGAGCGTTGCGTTGCAATAGCTGCGAA
CCATTAAGGTGTGGAATCAGCTCCGTCCAGAAGTAACGCTACTCCCGCGG
TCTGTTTTTTTGCAGCAATCAACGTCGCGGGTTCGCAAATGCCGGATCGC
CCAGACGGAACGAAACAACGTTCGTGCTGTGTATACTGGGCTGCTTCGTC
TCGGCTGCTGGACGTGTTGTTACGTGTTGCCGTCATTCTGGCTATTGCCG
GACACTTACTTCATCACACGAAAATGGCAAGCAAACACGTGACCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCTCTCTTTGTTCCCCAAAACAAACCACT
TCGCCCCCAGGTGGAGGCCACACACCNNNNNNNNNNTGCATGTTTGCCTT
CGCTCTGCGTTGTTGTGACTCTTCTTTTTCTTAATCGATATTGGCGGGAA
GAGCCCGGTCCCCCCCCCCCCCCCGTCAACCCCCTGCCTCTCTTGCTTGT
CCGAACAGACGAACTCTCTGCGCTCAAGGGGAACGTCATCTACCCCCGCG
CTCGCCGCAAGGCCGCCATTGCCTCTCAGCGCCGCACGGCGTCAGAGATT
GGCAAGTTCGTGGGCGGCGCGGCAGACGACGACGATGACGACGATTCAGA
CGAGGATGGGGAGCTCGGAGGCAACTTGGGCGGCGCCTCCGCGGCGGTAG
CGGACGGCGAGAGCGAAGAGGAAGCAGAGCTCGAGTTCTGAACTGGATGA
TGGACAGGAGAGGGCCTTTCGCCCTTGTGCACGTTTTTTTCTATAGTAGT
GGTCTCTCGAACAGCAGTGTAGTTTATGCATGGGTTTTACGTCTGTAGGG
ATAGTGCATGGTATTGGGGCGCTATACACAGGGGGAGCTGAAGGTCTCGC
AGGGTAGGTAGGGGTCGGTGGAATCCTCAGCGGAGGGGCCCCTAACAGGC
GGGAGGGTTGGGTGGGCTGGGATAGGAGGTTGGTTGCGGCCTCACTTTTG
GTGACGCAGTTTTGTTCCAGGCCAATCTTGGCGTTGCCACTCCGTGCGTA
CAAAGCTCGGTTGCTCGAGACCGATCGATGCTGTTAGCTGTGGCGGGGGA
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1979:12947..14447-

>mRNA_Ecto-sp13_S_contig1979.6408.1 ID=mRNA_Ecto-sp13_S_contig1979.6408.1|Name=mRNA_Ecto-sp13_S_contig1979.6408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1979:12947..14447- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTCCCTCCCCGCCCCTTTCCGGGAAATTTTTAACCCAGCGCAAGAT
TTTGTTTGATGAAGACGAAGACGAGCAAGAAGAGGAAGAAGCCAGCGGCA
GCGGAGGGGGCAAGGGGAAGGGAAAAGGGAAGGGGAAGGGGACGGCGGTC
GCGGAGAAGGAGAGACGACCCAAGAAAAAGGCCAAAAGAAGCTACGACGA
CGACCGCCTCGAAGCGGTTTCAAAAGACGAACTCTCTGCGCTCAAGGGGA
ACGTCATCTACCCCCGCGCTCGCCGCAAGGCCGCCATTGCCTCTCAGCGC
CGCACGGCGTCAGAGATTGGCAAGTTCGTGGGCGGCGCGGCAGACGACGA
CGATGACGACGATTCAGACGAGGATGGGGAGCTCGGAGGCAACTTGGGCG
GCGCCTCCGCGGCGGTAGCGGACGGCGAGAGCGAAGAGGAAGCAGAGCTC
GAGTTCTGA
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