mRNA_Ecto-sp13_S_contig1978.6400.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1978.6400.1
Unique NamemRNA_Ecto-sp13_S_contig1978.6400.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1978.6400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1978contigEcto-sp13_S_contig1978:14213..14691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size480
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.52687-CDS-Ecto-sp13_S_contig1978:14212..145841681462998.52687-CDS-Ecto-sp13_S_contig1978:14212..14584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1978 14213..14584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.536248-UTR-Ecto-sp13_S_contig1978:14584..146911681462998.536248-UTR-Ecto-sp13_S_contig1978:14584..14691Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1978 14585..14691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1978.6400.1prot_Ecto-sp13_S_contig1978.6400.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1978 14213..14584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1978.6400.1

>prot_Ecto-sp13_S_contig1978.6400.1 ID=prot_Ecto-sp13_S_contig1978.6400.1|Name=mRNA_Ecto-sp13_S_contig1978.6400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
HNLRDENTWTGPPNPLLPNACCYHLFLNNRPSSLHISASILYVTHTAGNT
CSRHVNTRTTPTLRQANRRKARRTWMRSGVFTSLIGFCKRATFHKPASSL
SGKRSRKPEEIKGGTHRHDFRMK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1978:14213..14691+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1978.6400.1 ID=mRNA_Ecto-sp13_S_contig1978.6400.1|Name=mRNA_Ecto-sp13_S_contig1978.6400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1978:14213..14691+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAACCTCCGAGATGAAAATACCTGGACAGGCCCACCGAACCCCTTGCT
CCCGAACGCGTGCTGCTACCACTTATTTCTCAACAACCGTCCATCGTCGC
TACACATAAGCGCGTCTATCCTCTACGTTACCCATACAGCTGGGAACACG
TGCTCTCGGCATGTCAACACGAGAACCACGCCGACACTTAGGCAGGCAAA
CAGGCGAAAGGCGAGGCGTACATGGATGCGATCGGGTGTCTTCACTTCAC
TGATTGGTTTCTGCAAACGCGCGACATTCCACAAACCGGCTTCATCCTTG
TCTGGAAAACGCTCTCGGAAGCCAGAGGAAATCAAAGGCGGAACACACCG
ACACGACTTTCGTATGAAATAAGCGGGGGCACATGCCCCGGCACTTTTAC
CGTCCTACAAACACGCGCGTCCTACAAACACGGGCTATTGCCGATCACAC
ACCAAATCAAGTCATCGCTCAGGTCGACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1978:14213..14691+

>mRNA_Ecto-sp13_S_contig1978.6400.1 ID=mRNA_Ecto-sp13_S_contig1978.6400.1|Name=mRNA_Ecto-sp13_S_contig1978.6400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1978:14213..14691+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAACCTCCGAGATGAAAATACCTGGACAGGCCCACCGAACCCCTTGCT
CCCGAACGCGTGCTGCTACCACTTATTTCTCAACAACCGTCCATCGTCGC
TACACATAAGCGCGTCTATCCTCTACGTTACCCATACAGCTGGGAACACG
TGCTCTCGGCATGTCAACACGAGAACCACGCCGACACTTAGGCAGGCAAA
CAGGCGAAAGGCGAGGCGTACATGGATGCGATCGGGTGTCTTCACTTCAC
TGATTGGTTTCTGCAAACGCGCGACATTCCACAAACCGGCTTCATCCTTG
TCTGGAAAACGCTCTCGGAAGCCAGAGGAAATCAAAGGCGGAACACACCG
ACACGACTTTCGTATGAAATAA
back to top