prot_Ecto-sp13_S_contig1976.6391.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1976.6391.1
Unique Name	prot_Ecto-sp13_S_contig1976.6391.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	531

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1976.6391.1 vs. uniprot
Match: A0A6H5J880_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J880_9PHAE)

HSP 1 Score: 671 bits (1730), Expect = 3.290e-237
Identity = 464/531 (87.38%), Postives = 473/531 (89.08%), Query Frame = 0

Query:    1 MSTPQRGGYSSRSKGKNRGRAXXXXXXXXXXX-QKKQKVGTPGGAGKGVQFEAALDSGAPAAAGTAGLGRGGDDDATGASSGGEGVDTFSYDDVSNLATVTPVVTKRSVSRAEVESSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVTEEGGAGVPAQQPAIAEGGDADEASAAVVDPRSALSSSKEQQAGPRSRPEVGKKSQRSSTSKSARKVPRYPQVLPETAGYAKPRNMSDALKIAVAAEIKGLIRKRGKEPDCKAAVQACKDSGMQILKHAKEICADLDPRPKVDLKEVRKALAEESRRYHAQIAEEEELWAIEEQKCLALAENTKRSQQAKVQAHDEKQAQGHVPSLTGNKEVRALLEPLDQDEEETAAANPSLDGTDTCKRVCDEIVASTNHMILNATAIGRCLQEMGSGVADAQETKERLAQVFRQVSLKSYPNVNDPKAGIAAMLK 530
            MSTPQRGGYSSRSKGKNRGR    X        QKKQKVGTPGGAGKGVQFEAA D G PAAAGTAGLGRGGDD+ATGASSGGEGVDTFSYDDVSNLATVTPVVTKRSVSRAEVES G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                              PAV  EGGAGVPAQQPA+AEGGDADEAS+AVVDPRSALSSSKEQQAGPRSRP VGKK++RSST+KSARKVPRYPQVLPETAGYAKPRNMSDALKIAVA+EIKGLIRKRGKEPDCKAAVQACKDSGMQILKHAKEICA LDPRPKVDLKEVRKALAEESRRYHAQIAEEE+LWAIEEQKCLALAE+TKRSQ AKVQAHDE QA GHVPSLTGNKEVRALLEPLDQDEEE AA NPSLDGTDTCKRVCDEIVASTNHMILNATAIGRCLQEMGSGVADAQETKERLAQVFRQVSLKSYPNVNDPKAGIAAMLK
Sbjct:    1 MSTPQRGGYSSRSKGKNRGRTTSSXSRSRAPPLQKKQKVGTPGGAGKGVQFEAAFDPGTPAAAGTAGLGRGGDDNATGASSGGEGVDTFSYDDVSNLATVTPVVTKRSVSRAEVESGGGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAAAGNESKSDMSNISSNGHAAAV-----PAVAAEGGAGVPAQQPAVAEGGDADEASSAVVDPRSALSSSKEQQAGPRSRPNVGKKTRRSSTAKSARKVPRYPQVLPETAGYAKPRNMSDALKIAVASEIKGLIRKRGKEPDCKAAVQACKDSGMQILKHAKEICAGLDPRPKVDLKEVRKALAEESRRYHAQIAEEEKLWAIEEQKCLALAESTKRSQ-AKVQAHDEIQAHGHVPSLTGNKEVRALLEPLDQDEEECAAVNPSLDGTDTCKRVCDEIVASTNHMILNATAIGRCLQEMGSGVADAQETKERLAQVFRQVSLKSYPNVNDPKAGIAAMLK 525

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1976.6391.1 vs. uniprot
Match: D8LIH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH4_ECTSI)

HSP 1 Score: 412 bits (1059), Expect = 3.990e-140
Identity = 216/223 (96.86%), Postives = 221/223 (99.10%), Query Frame = 0

Query:  308 MSDALKIAVAAEIKGLIRKRGKEPDCKAAVQACKDSGMQILKHAKEICADLDPRPKVDLKEVRKALAEESRRYHAQIAEEEELWAIEEQKCLALAENTKRSQQAKVQAHDEKQAQGHVPSLTGNKEVRALLEPLDQDEEETAAANPSLDGTDTCKRVCDEIVASTNHMILNATAIGRCLQEMGSGVADAQETKERLAQVFRQVSLKSYPNVNDPKAGIAAMLK 530
            MSDALKIAVAAEIKGLIRKRGKEPDCKAAVQACKDSGMQ+LKHAKEICADLDPRPKVDLKEVRKALAEESRRYHAQIAEEE+LWAIEEQKCLALAE+TKRSQ AKVQAH+EKQA GHVPSLTGNKEVRALLEPLDQDEEE+AAANPSLDGTDTCKRVCDEIVASTNHMILNATAIGRCLQEMGSGVADAQETKERLAQVFRQVSLKSYPNVNDPKAGIAAMLK
Sbjct:    1 MSDALKIAVAAEIKGLIRKRGKEPDCKAAVQACKDSGMQVLKHAKEICADLDPRPKVDLKEVRKALAEESRRYHAQIAEEEKLWAIEEQKCLALAESTKRSQ-AKVQAHNEKQAHGHVPSLTGNKEVRALLEPLDQDEEESAAANPSLDGTDTCKRVCDEIVASTNHMILNATAIGRCLQEMGSGVADAQETKERLAQVFRQVSLKSYPNVNDPKAGIAAMLK 222

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1976.6391.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1976.6391.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5J880_9PHAE	3.290e-237	87.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LIH4_ECTSI	3.990e-140	96.86	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 370..390
None	No IPR available	COILS	Coil	Coil	coord: 399..419
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 180..199
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..179
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 200..530

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1976	contig	Ecto-sp13_S_contig1976:1360..8898 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1976.6391.1	mRNA_Ecto-sp13_S_contig1976.6391.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1976 113..8898 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1976.6391.1 ID=prot_Ecto-sp13_S_contig1976.6391.1|Name=mRNA_Ecto-sp13_S_contig1976.6391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=531bp
MSTPQRGGYSSRSKGKNRGRASGSSSSRAPPPQKKQKVGTPGGAGKGVQF
EAALDSGAPAAAGTAGLGRGGDDDATGASSGGEGVDTFSYDDVSNLATVT
PVVTKRSVSRAEVESSGGSTTDKDTQQQQQQQQQQQRPQQGGKGKKRAAE
RQGAAAEGTDTEEEYESGGARRRKKRKQEAAAAAAAAAAATATALRAAAG
GERKSDISNNSSNGHAAAVPAVTEEGGAGVPAQQPAIAEGGDADEASAAV
VDPRSALSSSKEQQAGPRSRPEVGKKSQRSSTSKSARKVPRYPQVLPETA
GYAKPRNMSDALKIAVAAEIKGLIRKRGKEPDCKAAVQACKDSGMQILKH
AKEICADLDPRPKVDLKEVRKALAEESRRYHAQIAEEEELWAIEEQKCLA
LAENTKRSQQAKVQAHDEKQAQGHVPSLTGNKEVRALLEPLDQDEEETAA
ANPSLDGTDTCKRVCDEIVASTNHMILNATAIGRCLQEMGSGVADAQETK
ERLAQVFRQVSLKSYPNVNDPKAGIAAMLK*