prot_Ecto-sp13_S_contig1975.6383.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1975.6383.1
Unique Nameprot_Ecto-sp13_S_contig1975.6383.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length832
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1975.6383.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI)

HSP 1 Score: 1164 bits (3011), Expect = 0.000e+0
Identity = 635/737 (86.16%), Postives = 653/737 (88.60%), Query Frame = 0 
Query:   95 MPEVVQALLQQVQSELPVCTPVIVHVLLHRLAVVRPVKEASCRCTNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGTAAWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGCDTLDDSLALDAEGEEAQDTRRRSRCLSCSAALSDIAAGIDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCDGVRQALVAAELSRRQASPPSFPPGCRLLLSFIGGLAGDGGAQIAGFLRELCGAEMRRFLARGRSKPSSRTGRGRRYADTYKAMGRGAVARRQPEFPTLEAYVGHLSLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERQQSSTFAAVLASLSHALALLLTRPKRGGGCSSTVRGTAGNLLEIVFDSDARPLSCLPRPLAEAAIDVLKEAGHLRLARSNELLRPQRGSRR-EPNAAGRRKESKLGPVAATVTEEGASFASGIDFQGASLAFRNSWSLAAAGVDTQLPSTSRSDRSRRGDGGXXXXXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLMVSDVWRPFFEARWPLTAIGSDLDLAGVSDRLLAEGLGSARKNAKRRRRHGKIGVVHWRTPEDTSEQQQPLLERDWMALYRDRHRAERAARGKFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPRKKRRIGKK 830
            MPEV+QALLQ                                  TNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPG A WAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGCDTLDDSLALDAEGEE QD RRRSRCLSCS ALSD AAG DASETE ARPQCC+AQEKRD+VLESMLRWAVDVHFRQCSRLLQASVNRAVC GVRQALVAAELSRRQASPPSFP GCRLLLSF+GGLAGDGGAQIAGFLRE CGAEMRRFL RGR +P S T RGRR+AD + A GRG VARRQPE P L+AYVGHL LCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPER+Q+S F AVLASLSHALALLLTRPKRGG CSS V  T GNLLEIVFDSD RPLSC+PRPLAEAAIDVLKEAGHL+LARS+ELLR   GSRR EPNAAGRR+ESKLGPVAATVTEEGASFASGIDFQ ASLAFRNSWSLAAAGVD QLPST+ S RSRRGDGG   XXXXXXXXXXXX ADGDVDGA AIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELL VS VWRPFFEARWPLTAIGSDLDL GVSDRLLAEGLGSARKNAKRRRRHGKIGVVHWRT EDTS QQQPLLERDWMALYRDRHRAERAARG+FAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPR+KR +GKK
Sbjct:    1 MPEVIQALLQ----------------------------------TNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGAAVWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGCDTLDDSLALDAEGEETQDRRRRSRCLSCSTALSDNAAGTDASETERARPQCCNAQEKRDLVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSRRQASPPSFPLGCRLLLSFVGGLAGDGGAQIAGFLRERCGAEMRRFLTRGRWRPPSGTARGRRHADAWTATGRG-VARRQPELPMLDAYVGHLCLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERRQNSNFEAVLASLSHALALLLTRPKRGGVCSSIVPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLRLPWGSRRGEPNAAGRREESKLGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLLAEGLGSARKNAKRRRRHGKIGVVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKRLMGKK 702
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BLAST of mRNA_Ecto-sp13_S_contig1975.6383.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE)

HSP 1 Score: 851 bits (2199), Expect = 6.860e-303
Identity = 468/528 (88.64%), Postives = 486/528 (92.05%), Query Frame = 0 
Query:  227 DDSLALDAEGEEAQDTRRRSRCLSCSAALSDIAAGIDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCDGVRQALVAAELSRRQASPPSFPPGCRLLLSFIGGLAGDGGAQIAGFLRELCGAEMRRFLARGRSKPSSRTGRGRRYADTYKAMGRGAVARRQPEFPTLEAYVGHLSLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERQQSSTFAAVLASLSHALALLLTRPKRGGGCSSTVRGTAGNLLEIVFDSDARPLSCLPRPLAEAAIDVLKEAGHLRLARSNELLRPQRGSRR-EPNAAGRRKESKLGPVAATVTEEGASFASGIDFQGASLAFRNSWSLAAAGVDTQLPSTSRSDRSRRGDGGXXXXXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLMVSDVWRPFFEARWPLTAIGSDLDLAGVSDRLLAEGLGSARKNAKRRRRHGKIGVVHWRTPE 753
            DDSLAL+AEGEEAQ TRRRSRCLSCSAALSD  AG DASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVC GVRQALVAAELS RQASPPSFPPGCRLLLSF+GGLAGDGGAQIAGFLRE CGAE+RRFLARGR +P S T RGRR+ADT  A G GAVA RQ E P L+AYVGHL LCRHVSDPL+ATHL WLARQAL VLRMLDMPEEGA  TTAA ER+QSS FA VLASLSHALALLLTRPKRGG CSSTV  TAGNLLEIVFDSDARPLSC+PRPLAEAAIDVLKEAGH++LARS+ELLRP RGSRR EPNAAGRR +SKLGPVAATVTEEGASFASGIDF+ ASLAFR++WSLAAAGVDTQLPSTSRS RSRRGDGG    XXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVT+RV SFMTPKRVCRLACVDRAWRELLMVS VWRPFFEARWPL+AIGSDLDLAGVSDRLLAEGLGSARK AKRRRRHGKIGVVHWRTPE
Sbjct:   33 DDSLALEAEGEEAQGTRRRSRCLSCSAALSDNPAGTDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSMRQASPPSFPPGCRLLLSFVGGLAGDGGAQIAGFLRERCGAELRRFLARGRWRPPSGTCRGRRHADTCTATG-GAVAGRQAESPMLDAYVGHLCLCRHVSDPLAATHLAWLARQALTVLRMLDMPEEGAHETTAAAERRQSSNFADVLASLSHALALLLTRPKRGGLCSSTVPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRPPRGSRRGEPNAAGRRTKSKLGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLLAEGLGSARKKAKRRRRHGKIGVVHWRTPE 559
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1975.6383.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS3_ECTSI0.000e+086.16F-box, zinc finger protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JX00_9PHAE6.860e-30388.64F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 796..818
IPR001810F-box domainPROSITEPS50181FBOXcoord: 654..700
score: 9.656
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 653..778

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1975contigEcto-sp13_S_contig1975:8652..13984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1975.6383.1mRNA_Ecto-sp13_S_contig1975.6383.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1975 8617..15130 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1975.6383.1 ID=prot_Ecto-sp13_S_contig1975.6383.1|Name=mRNA_Ecto-sp13_S_contig1975.6383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=832bp
MEKTKGWEQLGELSKILQAFRRMYVHREAEDNHPAFPHWRQELVDFLKGL
LLSCEVGTREDGDWIHFSFEGPFATVLGHSCCDWSSPDAFGCGLMPEVVQ
ALLQQVQSELPVCTPVIVHVLLHRLAVVRPVKEASCRCTNGPFLALVSGL
QGALDACPAMPTLTLETSIEDCLRRPSPGTAAWAFGSTRMFVSGVLSLVS
SSPRSLCQAVVSVLVRFVAGDGCDTLDDSLALDAEGEEAQDTRRRSRCLS
CSAALSDIAAGIDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQC
SRLLQASVNRAVCDGVRQALVAAELSRRQASPPSFPPGCRLLLSFIGGLA
GDGGAQIAGFLRELCGAEMRRFLARGRSKPSSRTGRGRRYADTYKAMGRG
AVARRQPEFPTLEAYVGHLSLCRHVSDPLSATHLVWLARQALAVLRMLDM
PEEGAPGTTAAPERQQSSTFAAVLASLSHALALLLTRPKRGGGCSSTVRG
TAGNLLEIVFDSDARPLSCLPRPLAEAAIDVLKEAGHLRLARSNELLRPQ
RGSRREPNAAGRRKESKLGPVAATVTEEGASFASGIDFQGASLAFRNSWS
LAAAGVDTQLPSTSRSDRSRRGDGGGDSSDNTDSGDDDDDSADGDVDGAG
AIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLMVSDVWRPF
FEARWPLTAIGSDLDLAGVSDRLLAEGLGSARKNAKRRRRHGKIGVVHWR
TPEDTSEQQQPLLERDWMALYRDRHRAERAARGKFAAKTEFPWLVCPFLG
CVSSLKSEFAVKRHVRTHKRPRKKRRIGKKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR001810F-box_dom
IPR036047F-box-like_dom_sf