mRNA_Ecto-sp13_S_contig19740.6378.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: D8LHW8_ECTSI (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW8_ECTSI) HSP 1 Score: 338 bits (868), Expect = 7.650e-113 Identity = 198/210 (94.29%), Postives = 204/210 (97.14%), Query Frame = 1
Query: 1 MIHTVKVLDIMEKVSTGGNDRPRLAVTIDDCGQVGEMVEDDEQAGGISGQVGQAGADGGEADARRSTEEXXXXXXXXXXXXXXXXXVLEEPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
++ ++VLDIMEKVSTGGNDRPRLAVTIDDCGQVGE+VEDDEQAGG+SGQVGQA GGEADARRSTEEXXXXXXXXXXXXXXXXXVLEEPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQN KKEKHKAAFGWNVFNQDALFKGYKKRL
Sbjct: 149 IVEGMEVLDIMEKVSTGGNDRPRLAVTIDDCGQVGEVVEDDEQAGGVSGQVGQAXXXGGEADARRSTEEXXXXXXXXXXXXXXXXXVLEEPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNNKKEKHKAAFGWNVFNQDALFKGYKKRL 358
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: A0A7S2RFH4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFH4_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.740e-36 Identity = 83/206 (40.29%), Postives = 125/206 (60.68%), Query Frame = 1
Query: 13 VKVLDIMEKVSTGGNDRPRLAVTIDDCGQVGEMVEDDEQAGGISGQVGQAGADGGEADARRSTEEXXXXXXXXXXXXXXXXXVLEEPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
+ L +++KVST NDRPR V + DCGQ+G +V+D + G + V QA D D S E +E DE+ LG MS ++RLF +R+K+NKGR+AN++ E RL DP + AK + E+ E +++W EM+ERGLS D++++ ETA+ A ++ K+KE++ A+FGW+VFNQD+L + Y+KRL
Sbjct: 179 MSTLKLIQKVSTDRNDRPRFDVVVMDCGQLGTVVDDGQGDVGAAAGV-QADQDPVSTD-NPSVEAAPEGGEDPSAGSAEVEDEEDEVDESVLGNMSEKQRRLFLLRMKINKGRKANRQEAAQEKQRLDDPFFQAKQKAAERRENREKWRKEMEERGLSTDQSYLFETAEVASSKHERKKRKERNAASFGWDVFNQDSLHRAYEKRL 382
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: A0A7S2FEJ2_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEJ2_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.230e-32 Identity = 63/118 (53.39%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 277 EATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
E LG MS ++RLFK+R+K+NKGR+ANKKA DE RL DP + AK + E++ K+RW EMK+RGL+ D++++ ETA++A+ ++ KK+K KAAFGW+VFNQD L+K Y+KRL
Sbjct: 1 EGALGHMSERQKRLFKLRMKINKGRKANKKATTDEQKRLDDPHWEAKEKAAERQANKQRWAKEMKDRGLTTDQSYLFETAETAEQKYERKAKKDKGKAAFGWDVFNQDTLYKAYEKRL 118
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: K8Z7S9_NANGC (Myosin light chain kinase n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7S9_NANGC) HSP 1 Score: 106 bits (264), Expect = 6.180e-23 Identity = 52/118 (44.07%), Postives = 84/118 (71.19%), Query Frame = 1
Query: 277 EATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
EA + M+ ++RL+K++ K+N+GR+ N++AVK+E+ R + P A++R +E+ ++ +RW E+ RG+ +EA+M ETA++A +K K +AAFGW+VFNQDAL+K YKKRL
Sbjct: 587 EADMSGMTETQRRLYKLKWKLNQGRKLNRQAVKEEFTRKNTPNLEARLRAEERRDSNERWRKEILARGMKPEEAYMFETAEAAGKKQAAAVRKAKGQAAFGWDVFNQDALYKAYKKRL 704
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: A0A4D9CQW4_9STRA (PPIase cyclophilin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQW4_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.150e-22 Identity = 51/118 (43.22%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 277 EATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
E + M+ ++RL+K++ K+N+GR+ N++AVK+E+ R P A++R +E+ ++ +RW E+ RG+ +EA+M ETA++A +K K +AAFGW+VFNQDAL+K YKKRL
Sbjct: 253 EVDMSGMTETQRRLYKLKWKLNQGRKLNRQAVKEEFTRKKTPNLEARLRAEERRDSNERWRKEILARGMKPEEAYMFETAEAAGKKQAAAARKAKGQAAFGWDVFNQDALYKAYKKRL 370
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: A0A836CNL4_9STRA (Cyclophilin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL4_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.000e-21 Identity = 82/213 (38.50%), Postives = 120/213 (56.34%), Query Frame = 1
Query: 1 MIHTVKVLDIMEKVSTGGNDRPRLAVTIDDCGQVGEMVEDDEQAGGISGQVGQA-GADGGEADARRSTEEXXXXXXXXXXXXXXXXXVLEEPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDP--GYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
++ + V+ +MEKV+TG ND+PR+AV I DCGQV + + +QA V Q A + A E XXXXXXX +E P + L MS E+RL ++RLK+N R+AN++ VKDE+ R++ G ++ + K K++G + +A + TA++A A KK+K KAAFGW++FNQD L+K YKKRL
Sbjct: 146 VVEGMDVVQLMEKVATGANDKPRMAVLIADCGQVADEEPEPQQAEAAQAAVAQQKAAITSQRAAEPGKEVAGGEEQPQGAXXXXXXXXVEAPVD--LSAMSEKERRLHQLRLKLNASRKANRQEVKDEFKRMNGEKKGXXXXXXAQDGQPKGKG----RKKKGAADPDALLSVTAEAAAQEAMGVHKKDKKKAAFGWDMFNQDTLYKTYKKRL 352
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: A0A7S3Y577_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y577_HETAK) HSP 1 Score: 90.5 bits (223), Expect = 4.040e-19 Identity = 83/188 (44.15%), Postives = 114/188 (60.64%), Query Frame = 1
Query: 46 TGGNDRPRLAVTIDDCGQVGEMVED---DEQAGGISGQVGQAGADGGEADARRSTEEXXXXXXXXXXXXXXXXXVLEEPDEA--------TLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAF 576
T NDRPR V + +CG++GE+V++ E+A + G EA + + XXXXXXXXXXXXXXXXX TL M+ +++RLF +RLKMN+GR+ NK+A K+E++RL+DP K E KKRWEAE++ERG+SK +A ++ETA+ A Q KKK+K AAF
Sbjct: 1 TDVNDRPRAPVIVSECGEIGEVVKELSVAEKAMAKYKESSTVAEKGEEAASEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEAMTPMQRRLFNLRLKMNQGRKLNKQATKEEHDRLTDPQRKKKEXXXXXXENKKRWEAELRERGISKADACLLETAEQAGQKYQAKKKKDKKAAAF 188
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: W4H3R8_9STRA (Pre-mRNA-splicing factor SYF2 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3R8_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 7.960e-19 Identity = 50/121 (41.32%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 268 EPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
EP+++ ++ E+RLF+IR+KMN GR+ NK+ ++E+ + S P AK + + + A + E + KD+A+M++T A++ A+++ KKEK KAAFGW VFNQD+L+ YKKRL
Sbjct: 6 EPEDSADATRTAAEKRLFEIRMKMNAGRKKNKELAEEEHMKASLPAGKAKKWSADVDGAAPKREVA----SVPKDKAYMLDTVVDAELKAKKSHKKEKQKAAFGWEVFNQDSLYNAYKKRL 122
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: A0A0P1A4B3_PLAHL (Cyclin D-interacting protein GCIP n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4B3_PLAHL) HSP 1 Score: 88.6 bits (218), Expect = 3.780e-18 Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 268 EPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
E DE T M+ +++LF IR+KMN GR+ANKK V E++R+ + + K++ + +KR E +M+ + D+A + ETA++A + + KKEK KAAFGW+VFN+D+L+KGYKKRL
Sbjct: 5 EQDELTA--MTPAQRKLFDIRMKMNAGRKANKKEVVAEHDRIQNI-----KKDKKENQYRKREERKME---FASDKAHLNETAEAAAMKTKITSKKEKRKAAFGWDVFNEDSLYKGYKKRL 115
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Match: A0A6G0X0R1_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0R1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 5.980e-18 Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 262 LEEPDEATLGKMSSVEQRLFKIRLKMNKGRRANKKAVKDEYNRLSDPGYAAKMRTKEKEEAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNKKKEKHKAAFGWNVFNQDALFKGYKKRL 630
+EE + MS+VE++LF+IR+KMN GR+ NK+ V+ E+ + S G AK T +E KR E++ +++++ +T A++ +++ KKEK KAAFGW VFNQD+L+ YKKRL
Sbjct: 7 VEEQTQDEPQNMSAVEKKLFEIRMKMNAGRKKNKELVEQEHMKASLSGAKAKKLTSSDDEPPKRQESKP-------EKSYLNDTIADAEVKTKKSLKKEKQKAAFGWEVFNQDSLYNAYKKRL 122 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19740.6378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19740.6378.1 >prot_Ecto-sp13_S_contig19740.6378.1 ID=prot_Ecto-sp13_S_contig19740.6378.1|Name=mRNA_Ecto-sp13_S_contig19740.6378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp MIHTVKVLDIMEKVSTGGNDRPRLAVTIDDCGQVGEMVEDDEQAGGISGQback to top mRNA from alignment at Ecto-sp13_S_contig19740:2..2897- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19740.6378.1 ID=mRNA_Ecto-sp13_S_contig19740.6378.1|Name=mRNA_Ecto-sp13_S_contig19740.6378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19740:2..2897- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19740:2..2897- >mRNA_Ecto-sp13_S_contig19740.6378.1 ID=mRNA_Ecto-sp13_S_contig19740.6378.1|Name=mRNA_Ecto-sp13_S_contig19740.6378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19740:2..2897- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |