mRNA_Ecto-sp13_S_contig19739.6376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19739.6376.1
Unique NamemRNA_Ecto-sp13_S_contig19739.6376.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: D7G5U2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5U2_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 8.200e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY
Sbjct:  233 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 287          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A7S2XZN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.450e-12
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            QYV+ R+V+T +A+ ++   LY EG++ P  G+ W+T+  C SQ+WALYVLVLFY
Sbjct:    6 QYVVCRVVTTVMAVGMEPFGLYREGEYHPATGFFWVTLANCLSQTWALYVLVLFY 60          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: K8Z680_NANGC (Transmembrane protein 184c n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z680_NANGC)

HSP 1 Score: 63.9 bits (154), Expect = 1.570e-10
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            QY+ +RL +  +  AL+   LY EG++  +RG+ W+TV  C SQ+WALY+L+LFY
Sbjct:  174 QYLGVRLATLVLTFALESLDLYAEGEYTVRRGFFWMTVANCISQTWALYILILFY 228          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: W7U0S2_9STRA (Signal recognition particle-docking protein FtsY n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0S2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-10
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            QY+ +RL +  +  AL+   LY EG++  +RG+ W+TV  C SQ+WALY+L+LFY
Sbjct:  769 QYLGVRLATLVLTFALESLDLYAEGEYTVRRGFFWMTVANCISQTWALYILILFY 823          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A4D9DA43_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA43_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.930e-10
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            QY+ +RL +     AL+   +Y EG++  +RG+ W+TV  C SQ+WALY+L+LFY
Sbjct:  227 QYLGVRLATLVFTFALESLDMYAEGEYTVRRGFFWMTVANCISQTWALYILILFY 281          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A1E7FR84_9STRA (DUF300-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR84_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.610e-7
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            QYVL++ + T     L+   LY EG F  K GYL+I++VT  SQ+WA+Y  + FY
Sbjct:  132 QYVLLKFILTIAVFILERNGLYKEGVFSYKGGYLYISIVTNLSQTWAIYCFLFFY 186          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A835YQ95_9STRA (Organic solute transporter Ostalpha-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ95_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            Q+++IR+ ST VAL +QL     +G    + G++ +T V CCSQ WALYVL+LFY
Sbjct:  286 QFLIIRVASTLVALYVQLVQRL-QGHGASQAGHMVVTAVVCCSQMWALYVLLLFY 339          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A6J1HVC8_CUCMA (protein LAZ1-like isoform X2 n=4 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HVC8_CUCMA)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 VQYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            VQY++I+ +++ +A+ L+   +Y EGDF+ K GY ++ VV   SQSWALY L+ FY
Sbjct:  154 VQYMMIKSLTSILAVVLENFGVYCEGDFNFKCGYPYMAVVLNFSQSWALYCLIQFY 209          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A7J7KCC7_BUGNE (Uncharacterized protein n=2 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KCC7_BUGNE)

HSP 1 Score: 52.8 bits (125), Expect = 1.440e-6
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            Q+ +++ V   V + LQ   LY++G+F PK+GYL+IT+V   S S ALY L LFY
Sbjct:   77 QFCVVKPVMAIVTIVLQSCDLYSDGNFTPKKGYLYITIVYNISISLALYALFLFY 131          
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A2U1MPF8_ARTAN (Organic solute transporter Ost-alpha n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MPF8_ARTAN)

HSP 1 Score: 52.0 bits (123), Expect = 2.790e-6
Identity = 24/56 (42.86%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 VQYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
            VQY++I+ +++ +A+ L+   +Y EG+F+ + GY ++ VV   SQ+WALY LV FY
Sbjct:  227 VQYMIIKALTSVLAVVLEAFDVYCEGEFNWRCGYPYVAVVLNFSQTWALYCLVQFY 282          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5U2_ECTSI8.200e-29100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XZN0_9STRA1.450e-1250.91Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
K8Z680_NANGC1.570e-1047.27Transmembrane protein 184c n=1 Tax=Nannochloropsis... [more]
W7U0S2_9STRA1.710e-1047.27Signal recognition particle-docking protein FtsY n... [more]
A0A4D9DA43_9STRA5.930e-1045.45Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1E7FR84_9STRA2.610e-745.45DUF300-domain-containing protein (Fragment) n=1 Ta... [more]
A0A835YQ95_9STRA1.080e-649.09Organic solute transporter Ostalpha-domain-contain... [more]
A0A6J1HVC8_CUCMA1.310e-646.43protein LAZ1-like isoform X2 n=4 Tax=Cucurbita Tax... [more]
A0A7J7KCC7_BUGNE1.440e-647.27Uncharacterized protein n=2 Tax=Bugula neritina Ta... [more]
A0A2U1MPF8_ARTAN2.790e-642.86Organic solute transporter Ost-alpha n=1 Tax=Artem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19739contigEcto-sp13_S_contig19739:2576..2743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.4
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D7G5U2
Model size168
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.negative regulation of brassinosteroid mediated signaling pathway
EggNOG OGsKOG2641@1,KOG2641@2759
Cds size168
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.3962882-CDS-Ecto-sp13_S_contig19739:2575..27431681462996.3962882-CDS-Ecto-sp13_S_contig19739:2575..2743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19739 2576..2743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19739.6376.1prot_Ecto-sp13_S_contig19739.6376.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19739 2576..2743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19739.6376.1

>prot_Ecto-sp13_S_contig19739.6376.1 ID=prot_Ecto-sp13_S_contig19739.6376.1|Name=mRNA_Ecto-sp13_S_contig19739.6376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
VQYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALY
VLVLFY
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mRNA from alignment at Ecto-sp13_S_contig19739:2576..2743-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19739.6376.1 ID=mRNA_Ecto-sp13_S_contig19739.6376.1|Name=mRNA_Ecto-sp13_S_contig19739.6376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19739:2576..2743- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGTACGTGCTCATCAGACTCGTGAGCACTGCCGTAGCGCTCGCCCT CCAGCTGGGGCACCTGTACACCGAAGGGGACTTCGACCCTAAGCGGGGGT ACCTGTGGATCACAGTCGTCACTTGCTGCAGCCAATCATGGGCCCTTTAC GTCCTCGTCCTTTTTTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19739:2576..2743-

>mRNA_Ecto-sp13_S_contig19739.6376.1 ID=mRNA_Ecto-sp13_S_contig19739.6376.1|Name=mRNA_Ecto-sp13_S_contig19739.6376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19739:2576..2743- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGTACGTGCTCATCAGACTCGTGAGCACTGCCGTAGCGCTCGCCCT
CCAGCTGGGGCACCTGTACACCGAAGGGGACTTCGACCCTAAGCGGGGGT
ACCTGTGGATCACAGTCGTCACTTGCTGCAGCCAATCATGGGCCCTTTAC
GTCCTCGTCCTTTTTTAC
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