mRNA_Ecto-sp13_S_contig19735.6374.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19735.6374.1
Unique NamemRNA_Ecto-sp13_S_contig19735.6374.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19735.6374.1 vs. uniprot
Match: D8LLX9_ECTSI (Cilia- and flagella-associated protein 36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX9_ECTSI)

HSP 1 Score: 481 bits (1237), Expect = 7.180e-164
Identity = 275/315 (87.30%), Postives = 284/315 (90.16%), Query Frame = 1 
Query:   25 GSQDPAGNGEEKSMAASNGESKQDKAAARPGRGRNALDRQLRKAMDANLQELELMHKREEVEQAELEQAIAMSLALEAKRSEQATLQECLDGVGDVSGPRFGSRALSKPRNGSNVTRTGKSLQTGCKGGDDPDGDGDRAGGGGVSRRRQSKERDAARELTDVADDTPAEAKHDFIGEEGGAEEKHRSSSSSSLSCLGGLKKGTGAKALPPLSKTPVVGEIAAPFRGGSGEGVEGCSVRSSTATVIRDPDVESAERRREAREASEKARKFLXXXXXXXXXLKAQSEVSEEDSAQRERHLKNMRDRIVSAKRAGREE 969
            G ++ AGNGEEKSM+ASNGESK+DKAAARPGRGR+ALDRQLRKAMDANLQELELMHKREEVEQAELEQAIAMSLALEAKRSEQATLQECLDGVGDVSGPRFGS            ++TGKSLQ GCKGGDDPDGDGDRAGGGGVSRRRQSKERDAAREL DVADD PAEAK DFIGE GGAEEKHRSSSSSSLSCLGGLKKGTGAKALPPLSKTPVVGEI APFRGGSGEGVEGCS+ SSTAT+IRDPDVESAERRREAR ASEKARKFL         LKAQSEVSEEDSAQRERHLKNMRDRIVSAKRAGREE
Sbjct:  152 GDEELAGNGEEKSMSASNGESKRDKAAARPGRGRSALDRQLRKAMDANLQELELMHKREEVEQAELEQAIAMSLALEAKRSEQATLQECLDGVGDVSGPRFGSVPTG--------SQTGKSLQAGCKGGDDPDGDGDRAGGGGVSRRRQSKERDAARELADVADDAPAEAKRDFIGEGGGAEEKHRSSSSSSLSCLGGLKKGTGAKALPPLSKTPVVGEIVAPFRGGSGEGVEGCSISSSTATMIRDPDVESAERRREARAASEKARKFLEERRQAQKALKAQSEVSEEDSAQRERHLKNMRDRIVSAKRAGREE 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19735.6374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLX9_ECTSI7.180e-16487.30Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19735contigEcto-sp13_S_contig19735:170..3246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score490.3
Seed ortholog evalue7.5e-136
Seed eggNOG ortholog2880.D8LLX9
Preferred nameCFAP36
Model size1083
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035869,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0047485,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097546,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons5
EggNOG free text desc.protein N-terminus binding
EggNOG OGsKOG4511@1,KOG4511@2759
Ec32 ortholog descriptionADP-ribosylation factor-like 2-binding protein, domain
Ec32 orthologEc-14_002060.1
Cds size1083
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.248715-CDS-Ecto-sp13_S_contig19735:169..3671681462996.248715-CDS-Ecto-sp13_S_contig19735:169..367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19735 170..367 +
1681462996.2727537-CDS-Ecto-sp13_S_contig19735:1091..12261681462996.2727537-CDS-Ecto-sp13_S_contig19735:1091..1226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19735 1092..1226 +
1681462996.2812724-CDS-Ecto-sp13_S_contig19735:1514..18101681462996.2812724-CDS-Ecto-sp13_S_contig19735:1514..1810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19735 1515..1810 +
1681462996.2899072-CDS-Ecto-sp13_S_contig19735:2323..25671681462996.2899072-CDS-Ecto-sp13_S_contig19735:2323..2567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19735 2324..2567 +
1681462996.299137-CDS-Ecto-sp13_S_contig19735:3036..32461681462996.299137-CDS-Ecto-sp13_S_contig19735:3036..3246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19735 3037..3246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19735.6374.1prot_Ecto-sp13_S_contig19735.6374.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19735 170..3246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19735.6374.1

>prot_Ecto-sp13_S_contig19735.6374.1 ID=prot_Ecto-sp13_S_contig19735.6374.1|Name=mRNA_Ecto-sp13_S_contig19735.6374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=361bp
MSRNGLSCGSQDPAGNGEEKSMAASNGESKQDKAAARPGRGRNALDRQLR
KAMDANLQELELMHKREEVEQAELEQAIAMSLALEAKRSEQATLQECLDG
VGDVSGPRFGSRALSKPRNGSNVTRTGKSLQTGCKGGDDPDGDGDRAGGG
GVSRRRQSKERDAARELTDVADDTPAEAKHDFIGEEGGAEEKHRSSSSSS
LSCLGGLKKGTGAKALPPLSKTPVVGEIAAPFRGGSGEGVEGCSVRSSTA
TVIRDPDVESAERRREAREASEKARKFLEERRQAQQALKAQSEVSEEDSA
QRERHLKNMRDRIVSAKRAGREEEASKAASDSAAAAERGERAALPRTGGI
STSSSPASGAA
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mRNA from alignment at Ecto-sp13_S_contig19735:170..3246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19735.6374.1 ID=mRNA_Ecto-sp13_S_contig19735.6374.1|Name=mRNA_Ecto-sp13_S_contig19735.6374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19735:170..3246+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCGTAATGGCTTGTCTTGTGGATCGCAGGATCCGGCAGGCAACGG
CGAAGAAAAATCGATGGCGGCATCGAACGGCGAGTCTAAGCAGGACAAGG
CGGCCGCCAGGCCCGGGCGTGGAAGGAATGCGCTGGATAGGCAACTGCGC
AAGGCAATGGATGCCAACCTACAAGAGCTTGAACTCATGCACAAAAGGGT
GAACACACGCGTGAACGTTTTGTCATAAATGGGGCGTTAACCCAGCATAG
GATTTCATTCATCCAGAGATTATGATGCAGGCATGTCACCAAATCCACAG
CTCCGCCCTGCGGTTGACTATCATACAATCTGCTTGTCTTTAACGAATGG
GCTTGAACACGTACACACTAGGGAAATGTGGAGACCACCTTCATAAAGGT
TGCAACTCCCCAGCGTCTGCCGAGGACGAAACCCTCTTTTCCACAATGGT
TGATACAAACACGGGTTCAAAACCCGCTGCTCGCCTAATTTTCTATGGAA
AAAAAGAAAAACGGTGGGTGGGCCAAGGAAGGATGCAATTTCTGTCGAAC
CCGAAACTTCTGATAATGCGTGGCGGAAATGTTGCACCCGCACACCCGCA
CAGAAGATTGTTAGAAAATAAAGATGAATCTACTCGCCGCCAGCCGAGAG
GTCGCCCCTAGTCATCCAATGCGCATCAACAGCGCCTCGTCAATTGCGAC
GCCTGCTAGGGAATACGCTATACCATGGTGACGGGCCACCTAAGTGACCC
CGAGAAGCATGAGCAAATCTCTCTAGAAAAGGGCAACCGCAATCACGTTA
AGAACGGCTTTTCCTGATCACTCGGGGGGAATTCGGGACCAACATTCTTC
GCGTCACTCCTCTAAGGTTTACTTTTCGTCGGTTTCCCCACGCACACCAC
CCCGCACGCGCGGAACCAACAGGAAGAGGTCGAGCAGGCTGAACTCGAGC
AAGCCATCGCCATGTCGCTCGCTCTGGAGGCGAAGAGGAGCGAACAGGCC
ACCCTCCAAGAGTGCCTCGACGGCGTCGGCGATGTCAGCGGGCCACGGTT
CGGGTCGGTCCCCACGGGCTCGCAGGCTAGTCCAAACCGCGGGGACGAGA
CGACGCCCCGTATGTATACATAGCCCACGATATTCTGAGTTTAGGCCGCT
GGATAGCAATCCGGTGACGGCCGTGTACGGTGTCGTTCTCGTGTCTGTTA
GCTCTCGCCCCTTCTGTGTACTCAGCAACCTCGTGCCATAGCCGGCGAAA
ATGAAATGTCCTAGCATTGACTACGGTGGCATGATATTGAGGTGTTCATG
CACCAACAGCCCGAGACGGTACTTCCACACGCTAAACTCCAGTAGCGTGC
GCTGTCAAAACCCCGGAACGGATCAAACGTGACCCGGACCGGAAAATCGC
TTCAGACGGGCTGCAAGGGCGGGGACGACCCCGACGGCGACGGCGACCGG
GCGGGCGGCGGTGGGGTTTCCAGGCGGCGCCAGAGCAAAGAGCGGGACGC
TGCGAGAGAGTTGACTGACGTAGCTGACGATACACCGGCCGAGGCCAAGC
ATGACTTCATCGGAGAAGAGGGAGGAGCGGAGGAGAAACATCGATCGTCG
TCGTCGTCCTCGTTGTCGTGTTTGGGCGGCCTGAAGAAAGGGTAGGCACC
ACAACAAGGCTAATTGTAGGCTCGAGCAGGCTGTGAAGTCCACGACAGAA
ACGGGACTCGAGAATCGGTGGTTGGCCGATGATGGGGGGCCGGATAGCAT
TGCACTAGCCGGGAAGTAGCGGCTTTCCTACGCGAACCACAGTTTTTGCT
GATTCATGGCTAGAATTTGGTGGTTTGGATCTGTTATGTTGGCTCAGAAG
GTCGACGTCGCGAGACGCTGCCAATCGCTCTACTTGGTTTGCGCTAGAAG
AAAGGATCTAAAACTAGCTGCTAGGATTGGAGCAAGCGTTAGGACGTCTG
CGCACGACTAACCGACACACGAAGAAGAAGGCCACCTCCTACCCTTCGAA
AGCTTCACTGGATAATCGTGTTTCCCAGCACCACTCTCACGAACAAACCG
AAACTGACCACATCATCAACGAACATTCTACCGGATCCCCTACCCGACTC
AACCAACACACATGAAGCGCAACAAACTGCTCCGAACGAACCGACGTACG
ACAGGACCGGCGCCAAGGCCCTGCCTCCTTTGTCGAAGACCCCGGTGGTA
GGAGAAATCGCGGCGCCTTTCCGGGGAGGGAGCGGTGAGGGTGTGGAGGG
ATGCAGCGTCCGCAGCAGCACTGCGACCGTAATCCGAGATCCCGATGTAG
AGTCCGCTGAGCGCAGGCGCGAGGCCCGGGAGGCATCGGAGAAGGCCAGG
AAATTTCTGGAGGAGCGCCGGCAGGCGCAACAGGCCTTGAAGGCGCAGGT
CAGTGTTGGCAGCACGGGTTGGCCAGTGTGCGTGGAGAACGGTACCCTGT
ACATACGCAGGTACGATTACTAGGTGTGTTTGGATGATGTTCACTGTGTT
TCTGACATCAACGCGGTTTCCTGAGCTAGACGATGCTGGCCGTGAATACG
ATGTCTATGGTACAATTTAAACGGCACAACCACATGGACTACTTCATGTG
TCGACACCAAGATGCAAAAAATATCTAGAATGTGGCTGTTTAGGACACCG
ACGGCACTGGAAGTTTCTTCATCGCTACAGTACTGGTAGCACATGCACCG
TAGCAAGGCTTTGTCTTCCAAACACACGACCAACAGAACACAGCCGCGTT
ACCGAGAAATATTGGGTAAAGATGCTCGCACTTGCGAGGACGCCGGTCTT
GCTTCTCCTCAAGCGAACCACCCAGCCACGACCTTCCTCCACCTTTCGCA
ACGGTTTCAATCAAAAGTCGGAGGTCAGCGAGGAGGACAGCGCTCAGCGG
GAGCGCCACCTGAAGAACATGCGCGATCGCATCGTCAGCGCCAAGCGGGC
AGGGCGCGAAGAGGAGGCCTCCAAGGCCGCCTCCGATTCAGCCGCAGCCG
CGGAACGGGGGGAGCGAGCGGCTCTGCCCCGCACCGGCGGGATTTCTACC
TCTTCGTCGCCCGCTTCCGGTGCCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19735:170..3246+

>mRNA_Ecto-sp13_S_contig19735.6374.1 ID=mRNA_Ecto-sp13_S_contig19735.6374.1|Name=mRNA_Ecto-sp13_S_contig19735.6374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19735:170..3246+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCGTAATGGCTTGTCTTGTGGATCGCAGGATCCGGCAGGCAACGG
CGAAGAAAAATCGATGGCGGCATCGAACGGCGAGTCTAAGCAGGACAAGG
CGGCCGCCAGGCCCGGGCGTGGAAGGAATGCGCTGGATAGGCAACTGCGC
AAGGCAATGGATGCCAACCTACAAGAGCTTGAACTCATGCACAAAAGGGA
AGAGGTCGAGCAGGCTGAACTCGAGCAAGCCATCGCCATGTCGCTCGCTC
TGGAGGCGAAGAGGAGCGAACAGGCCACCCTCCAAGAGTGCCTCGACGGC
GTCGGCGATGTCAGCGGGCCACGGTTCGGGTCGCGTGCGCTGTCAAAACC
CCGGAACGGATCAAACGTGACCCGGACCGGAAAATCGCTTCAGACGGGCT
GCAAGGGCGGGGACGACCCCGACGGCGACGGCGACCGGGCGGGCGGCGGT
GGGGTTTCCAGGCGGCGCCAGAGCAAAGAGCGGGACGCTGCGAGAGAGTT
GACTGACGTAGCTGACGATACACCGGCCGAGGCCAAGCATGACTTCATCG
GAGAAGAGGGAGGAGCGGAGGAGAAACATCGATCGTCGTCGTCGTCCTCG
TTGTCGTGTTTGGGCGGCCTGAAGAAAGGGACCGGCGCCAAGGCCCTGCC
TCCTTTGTCGAAGACCCCGGTGGTAGGAGAAATCGCGGCGCCTTTCCGGG
GAGGGAGCGGTGAGGGTGTGGAGGGATGCAGCGTCCGCAGCAGCACTGCG
ACCGTAATCCGAGATCCCGATGTAGAGTCCGCTGAGCGCAGGCGCGAGGC
CCGGGAGGCATCGGAGAAGGCCAGGAAATTTCTGGAGGAGCGCCGGCAGG
CGCAACAGGCCTTGAAGGCGCAGTCGGAGGTCAGCGAGGAGGACAGCGCT
CAGCGGGAGCGCCACCTGAAGAACATGCGCGATCGCATCGTCAGCGCCAA
GCGGGCAGGGCGCGAAGAGGAGGCCTCCAAGGCCGCCTCCGATTCAGCCG
CAGCCGCGGAACGGGGGGAGCGAGCGGCTCTGCCCCGCACCGGCGGGATT
TCTACCTCTTCGTCGCCCGCTTCCGGTGCCGCT
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