mRNA_Ecto-sp13_S_contig1973.6370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1973.6370.1
Unique NamemRNA_Ecto-sp13_S_contig1973.6370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1973.6370.1 vs. uniprot
Match: D8LSL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSL7_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 4.380e-56
Identity = 98/108 (90.74%), Postives = 98/108 (90.74%), Query Frame = 1 
Query:    1 MVRLVEGQIVAEDEDGADGGFRRLLRCRTINFLGFRVPLYWSCVIVVFAGLKFGIFGLLFVAAAAGASQYACNDGGSXXXXXXXRRRPFARGSNVRGISDLPKPPPSS 324
            MVRLVEGQIVAEDEDGA G  R LLRCRTINFLGFRVPLYWSCVIVVFAGLKFGIFGLLFVAAAAGASQYACN    XXXXXXX  RPFARGSNVRGISDLPKPPPSS
Sbjct:    1 MVRLVEGQIVAEDEDGAGGWLRGLLRCRTINFLGFRVPLYWSCVIVVFAGLKFGIFGLLFVAAAAGASQYACNXXXXXXXXXXXXXRPFARGSNVRGISDLPKPPPSS 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1973.6370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSL7_ECTSI4.380e-5690.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1973contigEcto-sp13_S_contig1973:3187..5027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002120.1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462995.8648283-CDS-Ecto-sp13_S_contig1973:3186..33821681462995.8648283-CDS-Ecto-sp13_S_contig1973:3186..3382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1973 3187..3382 +
1681462995.877413-CDS-Ecto-sp13_S_contig1973:4263..43411681462995.877413-CDS-Ecto-sp13_S_contig1973:4263..4341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1973 4264..4341 +
1681462995.8868673-CDS-Ecto-sp13_S_contig1973:4974..50271681462995.8868673-CDS-Ecto-sp13_S_contig1973:4974..5027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1973 4975..5027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1973.6370.1prot_Ecto-sp13_S_contig1973.6370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1973 3187..5027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1973.6370.1

>prot_Ecto-sp13_S_contig1973.6370.1 ID=prot_Ecto-sp13_S_contig1973.6370.1|Name=mRNA_Ecto-sp13_S_contig1973.6370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MVRLVEGQIVAEDEDGADGGFRRLLRCRTINFLGFRVPLYWSCVIVVFAG
LKFGIFGLLFVAAAAGASQYACNDGGSRGGGSGGRRRPFARGSNVRGISD
LPKPPPSS*
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mRNA from alignment at Ecto-sp13_S_contig1973:3187..5027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1973.6370.1 ID=mRNA_Ecto-sp13_S_contig1973.6370.1|Name=mRNA_Ecto-sp13_S_contig1973.6370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1841bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1973:3187..5027+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACGGTTGGTGGAGGGCCAGATCGTCGCGGAGGACGAAGATGGCGC
GGATGGAGGGTTCCGGAGGCTGCTCCGTTGCAGGACGATCAATTTCCTGG
GCTTCCGCGTTCCCCTGTATTGGAGTTGCGTGATCGTCGTCTTCGCAGGG
CTGAAGTTTGGCATCTTTGGACTTCTCTTCGTTGCGGCAGCTGCGGGTAA
GCCAGGGTGGGCTACGCTATATGTTATGCACAGGGGATGTAGAGAACTTC
AGTCCCCTGGTGGGCGTCGAATATACGGCAGTGCTGATTCTCTATCGTGT
AGCGAGCAGCCGGGGGGCAGCAGCGGAGCGATGTCGCTACTCTCCCCCTC
CCCGCTTTGCACACTTCAACACAGCATCAAACACAACAGATGCCATCTGT
CATGACGGCATGCCACACGATGCGAGACCTGCCTCTGGACGTACGAAGGG
TAGCCGTCCGAACAGCACCTTTGAGTGGACTGTCATGTTCCCATGGCGAT
AGAGGGGGTCCTGCACGAACAAGTGCCTCAGTTGTTCCGCACTCTAGAGT
AATGAGAGCCCCCATCAAGCCCCCATGCGTAATTTATTTGTGATGAAACA
CCGAGGGCACTGCTGTCGTCAAGCGTGCTGTTGTGCTGTGAAGTCTGAGG
GCATCTGATGGCGAGGTAGGTGCCGCCTTTACAGCCCGGGGGTTTCCCGT
GAGGCGCAAAATATGAAACGCTCATTGCGTTTGCACCATTGGGCTAGGTC
ACGGCGACGCTGTGCTCGGCAAGAAATGATGTACCAACACAACGTATGGC
ACAACGTCTTCCGTTGTCTAAGATAACATTCCGCGCCGCACGCTGGACCC
ATGCCCTCGTTCCGAGAACATTTTTTGTGACTCAAACCCCCTGCCTTTCA
AGCCGACATGCGCCGAAGAGGCTGTCGGGACCACCATAGAATCGAGGGAT
AGGCAATGGCGAAGAGAATAGCTTGGAAATAACACGGAACAGCGGAAAAC
CAGGCGAAGATGTAAAACCGCACGTCGGATTTGCTATTTTTGACGATCTT
GGCCTCGATCTTGCAAAATTGGACCAGGCGCAAGCCAGTACGCCTGCAAC
GATGGAGGTTCGCGCGGCGGGGGAAGCGGTGGCCGACGTCGACCATTTGC
ACGAGGTGAACCTGTCCCACCGTAATGGTGGGCGCTCATGCTTGCTATGT
GCACGAGTTTAGTATGTACTGGTGTCAAACATTTGCATCTCTCGTAGTGT
CTAGAACAAGATGTTTGATCAGTCGGCAATCATGACCCGAAACTCGCAGC
TGTCCTCGATAGCTTCACAGGCACCGTTTGTGCCGGTTCGACGTGTGCCG
CTCGCTCTTTGTCGAGCGGGCCAAAATTTTACGATGGGTTAATGGGTTGT
GTTCATTACCTTTGGCACAAGTATGTGTTGCGGCGTTTTGGTGCTGATGT
CCACCAGAGGATCTTGGTTTTTGTTAGTGGGCAGAGGTATGGGTGATCTC
CCGACCCGTCGTACTTTCCCTAGGTATACTCGCCCCCCTTTCTTCTACCC
CACGACTCACAAAACGCTGTCCGAGGAAATTCCAAGCCAACAACCATGGC
CAGCGTCCCCTTGATGTTGCTCACGATGTGCCGGCATCTGGTGTGTTGTG
TGTGTTGTATGCTTGTTCGTCACTATCTCGTCCCCGTCCCGCGTCTGTCT
CGCCACCGTCCACCGCGCCGGCGCGCTCGCCGTCGCGCGACAACCTTTAA
CGATTTGCTCGCGTGTGCACGCATCACCACATTGACAGGGTCCAACGTCA
GAGGTATAAGCGACCTTCCGAAGCCTCCCCCGTCCAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1973:3187..5027+

>mRNA_Ecto-sp13_S_contig1973.6370.1 ID=mRNA_Ecto-sp13_S_contig1973.6370.1|Name=mRNA_Ecto-sp13_S_contig1973.6370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1973:3187..5027+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACGGTTGGTGGAGGGCCAGATCGTCGCGGAGGACGAAGATGGCGC
GGATGGAGGGTTCCGGAGGCTGCTCCGTTGCAGGACGATCAATTTCCTGG
GCTTCCGCGTTCCCCTGTATTGGAGTTGCGTGATCGTCGTCTTCGCAGGG
CTGAAGTTTGGCATCTTTGGACTTCTCTTCGTTGCGGCAGCTGCGGGCGC
AAGCCAGTACGCCTGCAACGATGGAGGTTCGCGCGGCGGGGGAAGCGGTG
GCCGACGTCGACCATTTGCACGAGGGTCCAACGTCAGAGGTATAAGCGAC
CTTCCGAAGCCTCCCCCGTCCAGCTGA
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